Wall clock time and date at job start Mon Mar 30 2020 20:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47466 * 2 1 4 4 C 1.50702 * 109.47280 * 239.99646 * 2 1 3 5 5 H 1.07997 * 119.99816 * 265.12057 * 4 2 1 6 6 C 1.37878 * 119.99949 * 85.12725 * 4 2 1 7 7 N 1.31515 * 119.99705 * 185.02302 * 6 4 2 8 8 Si 1.86799 * 119.99895 * 5.01165 * 6 4 2 9 9 H 1.48507 * 109.46653 * 94.90969 * 8 6 4 10 10 H 1.48498 * 109.47026 * 214.90838 * 8 6 4 11 11 H 1.48498 * 109.47531 * 334.91214 * 8 6 4 12 12 N 1.46906 * 109.46861 * 119.99717 * 2 1 3 13 13 C 1.46900 * 111.00218 * 274.99736 * 12 2 1 14 14 C 1.50690 * 109.47317 * 180.02562 * 13 12 2 15 15 C 1.32614 * 120.00194 * 125.00179 * 14 13 12 16 16 C 1.47748 * 120.00193 * 179.72466 * 15 14 13 17 17 C 1.39610 * 120.06843 * 359.72470 * 16 15 14 18 18 C 1.37796 * 119.93029 * 179.76627 * 17 16 15 19 19 C 1.39050 * 120.07275 * 0.51035 * 18 17 16 20 20 N 1.39532 * 119.93500 * 179.71835 * 19 18 17 21 21 C 1.46500 * 119.99716 * 174.27109 * 20 19 18 22 22 C 1.46495 * 120.00422 * 354.27578 * 20 19 18 23 23 C 1.39055 * 120.12735 * 359.74327 * 19 18 17 24 24 C 1.37797 * 120.06713 * 359.97438 * 23 19 18 25 25 H 1.08998 * 109.46553 * 185.01733 * 1 2 3 26 26 H 1.08995 * 109.46764 * 305.01797 * 1 2 3 27 27 H 1.08994 * 109.46654 * 65.01592 * 1 2 3 28 28 H 0.96998 * 119.99340 * 179.97438 * 7 6 4 29 29 H 1.00898 * 110.99883 * 151.04595 * 12 2 1 30 30 H 1.09003 * 109.46697 * 60.00169 * 13 12 2 31 31 H 1.09002 * 109.47452 * 300.00562 * 13 12 2 32 32 H 1.08009 * 120.00105 * 304.72858 * 14 13 12 33 33 H 1.08001 * 119.99903 * 359.72657 * 15 14 13 34 34 H 1.07997 * 120.03176 * 0.02562 * 17 16 15 35 35 H 1.08005 * 119.96755 * 180.25191 * 18 17 16 36 36 H 1.09006 * 109.47540 * 5.06009 * 21 20 19 37 37 H 1.09000 * 109.47042 * 125.05715 * 21 20 19 38 38 H 1.09002 * 109.47530 * 245.06190 * 21 20 19 39 39 H 1.08993 * 109.47273 * 89.99390 * 22 20 19 40 40 H 1.09004 * 109.47220 * 210.00182 * 22 20 19 41 41 H 1.09005 * 109.46855 * 329.99822 * 22 20 19 42 42 H 1.07998 * 119.96299 * 179.97438 * 23 19 18 43 43 H 1.08007 * 120.02916 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.2874 -1.7588 -1.1823 6 6 2.1666 -0.0221 -2.4175 7 7 2.5099 -0.6624 -3.5137 8 14 1.8605 1.8199 -2.4687 9 1 3.1497 2.5404 -2.3131 10 1 1.2442 2.1833 -3.7700 11 1 0.9443 2.2005 -1.3637 12 7 2.0196 -0.6925 1.1995 13 6 2.0825 0.2226 2.3470 14 6 2.5884 -0.5214 3.5558 15 6 3.6462 -0.0711 4.2168 16 6 4.1386 -0.7972 5.4056 17 6 3.4879 -1.9544 5.8377 18 6 3.9525 -2.6320 6.9439 19 6 5.0617 -2.1586 7.6360 20 7 5.5261 -2.8438 8.7593 21 6 6.7658 -2.4202 9.4150 22 6 4.7742 -3.9869 9.2829 23 6 5.7087 -1.0034 7.2112 24 6 5.2523 -0.3246 6.1023 25 1 -0.3632 -1.0237 0.0899 26 1 -0.3633 0.5897 0.8416 27 1 -0.3632 0.4340 -0.9315 28 1 2.6039 -0.1781 -4.3489 29 1 2.9173 -1.1205 1.0289 30 1 1.0871 0.6164 2.5525 31 1 2.7589 1.0463 2.1183 32 1 2.0869 -1.4190 3.8864 33 1 4.1477 0.8265 3.8862 34 1 2.6239 -2.3203 5.3029 35 1 3.4520 -3.5296 7.2763 36 1 7.1326 -1.5081 8.9442 37 1 6.5721 -2.2314 10.4709 38 1 7.5151 -3.2058 9.3178 39 1 5.1247 -4.9018 8.8054 40 1 4.9249 -4.0583 10.3601 41 1 3.7133 -3.8509 9.0727 42 1 6.5697 -0.6378 7.7510 43 1 5.7556 0.5724 5.7726 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170772.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:34 Heat of formation + Delta-G solvation = 52.774937 kcal Electronic energy + Delta-G solvation = -19777.903836 eV Core-core repulsion = 16823.437223 eV Total energy + Delta-G solvation = -2954.466613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.73648 -37.04798 -36.15259 -33.79045 -32.10170 -31.30866 -30.16904 -28.48113 -28.18291 -25.61441 -24.98555 -23.30890 -22.56763 -20.90291 -19.68342 -19.00188 -17.70308 -16.92799 -15.94166 -15.63209 -15.36344 -15.10622 -14.65937 -14.11046 -13.85697 -13.74549 -13.47973 -12.99276 -12.91446 -12.85640 -12.49970 -12.40160 -12.31181 -12.24367 -11.92130 -11.65674 -11.23409 -10.98609 -10.73613 -10.54022 -10.48997 -10.47544 -10.23288 -9.71061 -9.03977 -8.98094 -8.81681 -8.56881 -7.41469 -7.12011 -6.09156 -4.08914 1.18388 1.43212 2.73137 2.88789 3.26381 3.35949 3.39217 4.01391 4.40448 4.57384 4.67716 4.90342 4.92974 4.97298 5.02063 5.19552 5.24812 5.27367 5.31640 5.37293 5.42153 5.48781 5.54473 5.64996 5.79787 6.01218 6.06785 6.11073 6.20086 6.41464 6.43557 6.55872 6.72026 6.77408 6.84359 6.90300 6.96616 7.02144 7.09992 7.33006 7.45644 7.66494 7.97754 8.42687 8.67933 8.99895 9.54969 11.03947 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.036988 B = 0.002639 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.821376 B =10606.983096 C =10729.788566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.180 3.820 3 H 0.003 0.997 4 C -0.519 4.519 5 H 0.079 0.921 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.872 3.128 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.680 5.680 13 C 0.083 3.917 14 C -0.127 4.127 15 C -0.130 4.130 16 C -0.099 4.099 17 C -0.067 4.067 18 C -0.194 4.194 19 C 0.206 3.794 20 N -0.641 5.641 21 C 0.090 3.910 22 C 0.095 3.905 23 C -0.199 4.199 24 C -0.065 4.065 25 H 0.051 0.949 26 H 0.017 0.983 27 H 0.042 0.958 28 H 0.264 0.736 29 H 0.341 0.659 30 H 0.072 0.928 31 H 0.024 0.976 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.122 0.878 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.088 -1.705 26.497 27.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.071 3.929 3 H 0.020 0.980 4 C -0.557 4.557 5 H 0.097 0.903 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.699 3.301 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.184 1.184 12 N -0.311 5.311 13 C -0.046 4.046 14 C -0.146 4.146 15 C -0.149 4.149 16 C -0.101 4.101 17 C -0.085 4.085 18 C -0.216 4.216 19 C 0.106 3.894 20 N -0.354 5.354 21 C -0.053 4.053 22 C -0.048 4.048 23 C -0.221 4.221 24 C -0.084 4.084 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.160 0.840 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.139 0.861 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.561 -2.030 26.617 27.268 hybrid contribution 0.700 1.469 -0.386 1.672 sum 6.261 -0.561 26.231 26.974 Atomic orbital electron populations 1.21907 0.98230 1.00266 0.98096 1.19582 0.92327 0.92605 0.88370 0.97966 1.21091 1.43897 0.98528 0.92187 0.90271 1.24985 0.94430 0.98095 0.95491 1.69914 1.48026 1.35992 0.99574 0.86932 0.78907 0.86444 0.77775 1.20569 1.21249 1.18410 1.60627 1.33130 1.32476 1.04914 1.21033 0.99722 0.93721 0.90160 1.23427 0.96107 0.99365 0.95657 1.21554 0.97872 0.99983 0.95471 1.18873 0.97293 0.96718 0.97203 1.21129 0.98635 0.93837 0.94902 1.20587 0.99270 1.02812 0.98908 1.17883 0.93314 0.91250 0.87002 1.46235 1.25823 1.33447 1.29859 1.21678 0.85910 1.00669 0.97054 1.21585 0.96633 0.88045 0.98572 1.20604 1.03555 0.97084 1.00881 1.21001 0.95042 0.98564 0.93773 0.92962 0.96345 0.93851 0.92639 0.84032 0.90951 0.95801 0.86759 0.86998 0.85560 0.86143 0.90342 0.92834 0.93148 0.93486 0.91765 0.91301 0.86060 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.95 37.16 0.33 -2.51 16 2 C 0.18 4.32 2.13 -68.86 -0.15 4.17 16 3 H 0.00 0.07 5.37 -51.93 -0.28 -0.21 16 4 C -0.52 -14.62 8.84 -34.44 -0.30 -14.93 16 5 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 8 Si 0.87 21.54 26.35 -169.99 -4.48 17.06 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.26 -6.14 5.97 56.52 0.34 -5.80 16 12 N -0.68 -14.29 6.29 -109.22 -0.69 -14.98 16 13 C 0.08 1.45 5.93 -4.98 -0.03 1.42 16 14 C -0.13 -1.90 9.20 -36.21 -0.33 -2.24 16 15 C -0.13 -1.80 9.51 -37.60 -0.36 -2.16 16 16 C -0.10 -1.30 5.87 -104.99 -0.62 -1.92 16 17 C -0.07 -0.83 9.39 -39.23 -0.37 -1.20 16 18 C -0.19 -2.20 9.14 -39.44 -0.36 -2.56 16 19 C 0.21 2.27 6.54 -83.75 -0.55 1.73 16 20 N -0.64 -5.69 3.40 -187.51 -0.64 -6.33 16 21 C 0.09 0.58 10.62 59.85 0.64 1.22 16 22 C 0.09 0.63 10.09 59.84 0.60 1.24 16 23 C -0.20 -2.16 9.30 -39.44 -0.37 -2.53 16 24 C -0.07 -0.76 9.77 -39.23 -0.38 -1.15 16 25 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.02 0.36 7.58 -51.93 -0.39 -0.04 16 27 H 0.04 0.99 6.90 -51.93 -0.36 0.63 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.34 7.31 8.34 -39.29 -0.33 6.98 16 30 H 0.07 1.25 7.53 -51.93 -0.39 0.86 16 31 H 0.02 0.42 7.73 -51.93 -0.40 0.02 16 32 H 0.11 1.64 6.03 -52.48 -0.32 1.33 16 33 H 0.11 1.48 7.87 -52.49 -0.41 1.06 16 34 H 0.13 1.48 6.16 -52.49 -0.32 1.16 16 35 H 0.12 1.15 6.29 -52.48 -0.33 0.82 16 36 H 0.08 0.48 5.29 -51.93 -0.27 0.20 16 37 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.06 0.32 8.07 -51.93 -0.42 -0.10 16 41 H 0.07 0.45 6.44 -51.93 -0.33 0.11 16 42 H 0.12 1.05 5.72 -52.49 -0.30 0.75 16 43 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -31.30 343.26 -8.80 -40.09 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.60 Total: 5.09 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -2.34 Total: -19.43 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.55 Total: -47.99 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.48 Total: 17.06 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.30 -8.80 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170772.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.868 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds