Wall clock time and date at job start Mon Mar 30 2020 20:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47466 * 2 1 4 4 C 1.50702 * 109.47280 * 239.99646 * 2 1 3 5 5 H 1.07997 * 119.99816 * 265.12057 * 4 2 1 6 6 C 1.37878 * 119.99949 * 85.12725 * 4 2 1 7 7 N 1.31515 * 119.99705 * 185.02302 * 6 4 2 8 8 Si 1.86799 * 119.99895 * 5.01165 * 6 4 2 9 9 H 1.48507 * 109.46653 * 94.90969 * 8 6 4 10 10 H 1.48498 * 109.47026 * 214.90838 * 8 6 4 11 11 H 1.48498 * 109.47531 * 334.91214 * 8 6 4 12 12 N 1.46906 * 109.46861 * 119.99717 * 2 1 3 13 13 C 1.46900 * 111.00218 * 274.99736 * 12 2 1 14 14 C 1.50690 * 109.47317 * 180.02562 * 13 12 2 15 15 C 1.32614 * 120.00194 * 125.00179 * 14 13 12 16 16 C 1.47748 * 120.00193 * 179.72466 * 15 14 13 17 17 C 1.39610 * 120.06843 * 359.72470 * 16 15 14 18 18 C 1.37796 * 119.93029 * 179.76627 * 17 16 15 19 19 C 1.39050 * 120.07275 * 0.51035 * 18 17 16 20 20 N 1.39532 * 119.93500 * 179.71835 * 19 18 17 21 21 C 1.46500 * 119.99716 * 174.27109 * 20 19 18 22 22 C 1.46495 * 120.00422 * 354.27578 * 20 19 18 23 23 C 1.39055 * 120.12735 * 359.74327 * 19 18 17 24 24 C 1.37797 * 120.06713 * 359.97438 * 23 19 18 25 25 H 1.08998 * 109.46553 * 185.01733 * 1 2 3 26 26 H 1.08995 * 109.46764 * 305.01797 * 1 2 3 27 27 H 1.08994 * 109.46654 * 65.01592 * 1 2 3 28 28 H 0.96998 * 119.99340 * 179.97438 * 7 6 4 29 29 H 1.00898 * 110.99883 * 151.04595 * 12 2 1 30 30 H 1.09003 * 109.46697 * 60.00169 * 13 12 2 31 31 H 1.09002 * 109.47452 * 300.00562 * 13 12 2 32 32 H 1.08009 * 120.00105 * 304.72858 * 14 13 12 33 33 H 1.08001 * 119.99903 * 359.72657 * 15 14 13 34 34 H 1.07997 * 120.03176 * 0.02562 * 17 16 15 35 35 H 1.08005 * 119.96755 * 180.25191 * 18 17 16 36 36 H 1.09006 * 109.47540 * 5.06009 * 21 20 19 37 37 H 1.09000 * 109.47042 * 125.05715 * 21 20 19 38 38 H 1.09002 * 109.47530 * 245.06190 * 21 20 19 39 39 H 1.08993 * 109.47273 * 89.99390 * 22 20 19 40 40 H 1.09004 * 109.47220 * 210.00182 * 22 20 19 41 41 H 1.09005 * 109.46855 * 329.99822 * 22 20 19 42 42 H 1.07998 * 119.96299 * 179.97438 * 23 19 18 43 43 H 1.08007 * 120.02916 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.2874 -1.7588 -1.1823 6 6 2.1666 -0.0221 -2.4175 7 7 2.5099 -0.6624 -3.5137 8 14 1.8605 1.8199 -2.4687 9 1 3.1497 2.5404 -2.3131 10 1 1.2442 2.1833 -3.7700 11 1 0.9443 2.2005 -1.3637 12 7 2.0196 -0.6925 1.1995 13 6 2.0825 0.2226 2.3470 14 6 2.5884 -0.5214 3.5558 15 6 3.6462 -0.0711 4.2168 16 6 4.1386 -0.7972 5.4056 17 6 3.4879 -1.9544 5.8377 18 6 3.9525 -2.6320 6.9439 19 6 5.0617 -2.1586 7.6360 20 7 5.5261 -2.8438 8.7593 21 6 6.7658 -2.4202 9.4150 22 6 4.7742 -3.9869 9.2829 23 6 5.7087 -1.0034 7.2112 24 6 5.2523 -0.3246 6.1023 25 1 -0.3632 -1.0237 0.0899 26 1 -0.3633 0.5897 0.8416 27 1 -0.3632 0.4340 -0.9315 28 1 2.6039 -0.1781 -4.3489 29 1 2.9173 -1.1205 1.0289 30 1 1.0871 0.6164 2.5525 31 1 2.7589 1.0463 2.1183 32 1 2.0869 -1.4190 3.8864 33 1 4.1477 0.8265 3.8862 34 1 2.6239 -2.3203 5.3029 35 1 3.4520 -3.5296 7.2763 36 1 7.1326 -1.5081 8.9442 37 1 6.5721 -2.2314 10.4709 38 1 7.5151 -3.2058 9.3178 39 1 5.1247 -4.9018 8.8054 40 1 4.9249 -4.0583 10.3601 41 1 3.7133 -3.8509 9.0727 42 1 6.5697 -0.6378 7.7510 43 1 5.7556 0.5724 5.7726 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663170772.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:34 Heat of formation + Delta-G solvation = 33.765625 kcal Electronic energy + Delta-G solvation = -19778.728142 eV Core-core repulsion = 16823.437223 eV Total energy + Delta-G solvation = -2955.290919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.55297 -38.27161 -37.37702 -35.22196 -33.94049 -32.12740 -31.57445 -29.50008 -28.98132 -27.32858 -26.32125 -24.45550 -23.42455 -21.83797 -21.53129 -20.11504 -18.99799 -18.45660 -17.19703 -16.61698 -16.46826 -15.94353 -15.73729 -15.64647 -15.08937 -14.93603 -14.64090 -14.50449 -14.21979 -13.93168 -13.65973 -13.38106 -13.35453 -13.08353 -12.91459 -12.86825 -12.68977 -12.66931 -12.46917 -12.12497 -11.81534 -11.66357 -11.51110 -11.41405 -11.02965 -10.75634 -9.85338 -9.79124 -9.09924 -8.30874 -7.94844 -6.35893 0.21912 0.56822 1.32804 1.35370 1.47319 1.70234 2.26304 2.33286 3.04236 3.10175 3.61300 3.86303 3.99644 4.02298 4.24219 4.25728 4.44198 4.50649 4.51199 4.52849 4.56250 4.63171 4.76361 4.78789 4.81869 4.87296 4.89569 4.90521 4.96581 5.02317 5.12569 5.19962 5.30383 5.46876 5.52194 5.58603 5.72318 5.83018 5.93306 5.99530 6.08325 6.35982 6.54320 6.56007 6.69596 6.85010 7.32797 8.85975 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.036988 B = 0.002639 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.821376 B =10606.983096 C =10729.788566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.182 3.818 3 H 0.004 0.996 4 C -0.523 4.523 5 H 0.036 0.964 6 C 0.014 3.986 7 N -0.946 5.946 8 Si 0.939 3.061 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.239 1.239 12 N -0.684 5.684 13 C 0.088 3.912 14 C -0.148 4.148 15 C -0.110 4.110 16 C -0.130 4.130 17 C -0.074 4.074 18 C -0.206 4.206 19 C 0.205 3.795 20 N -0.644 5.644 21 C 0.083 3.917 22 C 0.089 3.911 23 C -0.207 4.207 24 C -0.066 4.066 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.037 0.963 28 H 0.267 0.733 29 H 0.335 0.665 30 H 0.077 0.923 31 H 0.025 0.975 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.143 0.857 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.470 -0.371 29.126 29.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.073 3.927 3 H 0.021 0.979 4 C -0.562 4.562 5 H 0.054 0.946 6 C -0.184 4.184 7 N -0.586 5.586 8 Si 0.763 3.237 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.162 1.162 12 N -0.315 5.315 13 C -0.041 4.041 14 C -0.167 4.167 15 C -0.129 4.129 16 C -0.132 4.132 17 C -0.093 4.093 18 C -0.229 4.229 19 C 0.102 3.898 20 N -0.356 5.356 21 C -0.059 4.059 22 C -0.054 4.054 23 C -0.229 4.229 24 C -0.085 4.085 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.153 0.847 30 H 0.096 0.904 31 H 0.043 0.957 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.144 0.856 35 H 0.152 0.848 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.161 0.839 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.945 -0.713 29.302 29.907 hybrid contribution 0.701 0.901 -1.021 1.532 sum 6.646 0.187 28.280 29.051 Atomic orbital electron populations 1.21818 0.96797 1.00490 0.99044 1.19479 0.93383 0.92090 0.87759 0.97873 1.21321 1.43565 0.96957 0.94310 0.94589 1.25872 0.94254 1.03351 0.94899 1.70062 1.49870 1.38231 1.00429 0.85863 0.79429 0.79962 0.78478 1.19820 1.20887 1.16182 1.60580 1.32846 1.33203 1.04846 1.21031 1.00262 0.93285 0.89512 1.23165 0.97580 1.00184 0.95737 1.21691 0.96591 0.99561 0.95022 1.18939 0.98737 0.97646 0.97833 1.21249 0.98747 0.93937 0.95362 1.20769 0.99831 1.03394 0.98857 1.18108 0.92939 0.91327 0.87402 1.46544 1.26472 1.33457 1.29097 1.21862 0.85147 1.01092 0.97791 1.21744 0.96449 0.87406 0.99811 1.20876 1.04220 0.97016 1.00801 1.21234 0.94501 0.99020 0.93748 0.93586 0.93373 0.94438 0.92441 0.84733 0.90442 0.95724 0.86557 0.86359 0.85603 0.84845 0.90066 0.91216 0.92291 0.93210 0.89727 0.91355 0.83925 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.95 71.98 0.64 -4.71 16 2 C 0.18 8.65 2.13 44.17 0.09 8.74 16 3 H 0.00 0.17 5.37 -2.39 -0.01 0.16 16 4 C -0.52 -30.19 8.84 25.60 0.23 -29.96 16 5 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 6 C 0.01 0.82 5.47 84.65 0.46 1.28 16 7 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 8 Si 0.94 44.12 26.35 68.60 1.81 45.92 16 9 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.24 -10.32 5.97 99.48 0.59 -9.73 16 12 N -0.68 -28.70 6.29 -499.46 -3.14 -31.84 16 13 C 0.09 2.98 5.93 85.55 0.51 3.49 16 14 C -0.15 -4.36 9.20 24.52 0.23 -4.14 16 15 C -0.11 -2.95 9.51 23.63 0.22 -2.72 16 16 C -0.13 -3.29 5.87 -20.10 -0.12 -3.41 16 17 C -0.07 -1.82 9.39 22.50 0.21 -1.61 16 18 C -0.21 -4.47 9.14 22.36 0.20 -4.27 16 19 C 0.20 4.16 6.54 38.31 0.25 4.41 16 20 N -0.64 -9.92 3.40 -747.14 -2.54 -12.47 16 21 C 0.08 0.85 10.62 127.77 1.36 2.20 16 22 C 0.09 0.98 10.09 127.77 1.29 2.27 16 23 C -0.21 -4.08 9.30 22.36 0.21 -3.87 16 24 C -0.07 -1.46 9.77 22.50 0.22 -1.24 16 25 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.05 1.79 7.58 -2.39 -0.02 1.77 16 27 H 0.04 1.64 6.90 -2.39 -0.02 1.62 16 28 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.34 14.66 8.34 -89.70 -0.75 13.91 16 30 H 0.08 2.53 7.53 -2.39 -0.02 2.51 16 31 H 0.02 0.83 7.73 -2.39 -0.02 0.82 16 32 H 0.12 3.34 6.03 -2.91 -0.02 3.33 16 33 H 0.12 2.96 7.87 -2.91 -0.02 2.94 16 34 H 0.13 2.96 6.16 -2.91 -0.02 2.95 16 35 H 0.13 2.41 6.29 -2.91 -0.02 2.39 16 36 H 0.08 0.77 5.29 -2.38 -0.01 0.76 16 37 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.08 0.60 8.07 -2.39 -0.02 0.58 16 41 H 0.07 0.77 6.44 -2.38 -0.02 0.75 16 42 H 0.14 2.09 5.72 -2.91 -0.02 2.08 16 43 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -67.78 343.26 2.57 -65.21 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.14 Total: 25.80 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 6.01 Total: -33.52 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -5.39 Total: -103.41 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.81 Total: 45.92 kcal Total: -67.78 2.57 -65.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170772.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.976 kcal (2) G-P(sol) polarization free energy of solvation -67.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds