Wall clock time and date at job start Mon Mar 30 2020 20:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46771 * 2 1 4 4 C 1.50698 * 109.46801 * 120.00080 * 2 1 3 5 5 H 1.07997 * 120.00112 * 120.00128 * 4 2 1 6 6 C 1.37880 * 120.00202 * 299.99650 * 4 2 1 7 7 N 1.31522 * 119.99618 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00386 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47152 * 90.00143 * 8 6 4 10 10 H 1.48502 * 109.46936 * 210.00297 * 8 6 4 11 11 H 1.48499 * 109.46992 * 330.00197 * 8 6 4 12 12 N 1.46901 * 109.46960 * 239.99793 * 2 1 3 13 13 C 1.46901 * 110.99986 * 85.00259 * 12 2 1 14 14 C 1.50699 * 109.47175 * 179.97438 * 13 12 2 15 15 C 1.32617 * 119.99511 * 127.24413 * 14 13 12 16 16 C 1.47748 * 120.00344 * 8.03954 * 15 14 13 17 17 C 1.39602 * 120.06545 * 217.97351 * 16 15 14 18 18 C 1.37806 * 119.93194 * 179.76593 * 17 16 15 19 19 C 1.39049 * 120.06425 * 0.50928 * 18 17 16 20 20 N 1.39532 * 119.93293 * 179.71875 * 19 18 17 21 21 C 1.46496 * 120.00087 * 180.02562 * 20 19 18 22 22 C 1.46505 * 120.00103 * 0.02562 * 20 19 18 23 23 C 1.39046 * 120.13539 * 359.74606 * 19 18 17 24 24 C 1.37808 * 120.06587 * 359.97438 * 23 19 18 25 25 H 1.08994 * 109.47234 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46997 * 59.99910 * 1 2 3 27 27 H 1.09004 * 109.47214 * 300.00494 * 1 2 3 28 28 H 0.97002 * 119.99888 * 179.97438 * 7 6 4 29 29 H 1.00900 * 111.00085 * 321.04548 * 12 2 1 30 30 H 1.08996 * 109.47131 * 300.00138 * 13 12 2 31 31 H 1.09003 * 109.46907 * 59.99487 * 13 12 2 32 32 H 1.07999 * 119.99917 * 307.24710 * 14 13 12 33 33 H 1.08005 * 119.99276 * 188.03438 * 15 14 13 34 34 H 1.07997 * 120.03441 * 0.02562 * 17 16 15 35 35 H 1.07995 * 119.96906 * 180.24913 * 18 17 16 36 36 H 1.08997 * 109.47296 * 60.00168 * 21 20 19 37 37 H 1.08999 * 109.47361 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.47047 * 300.00090 * 21 20 19 39 39 H 1.09000 * 109.46937 * 89.99659 * 22 20 19 40 40 H 1.09003 * 109.47376 * 209.99935 * 22 20 19 41 41 H 1.09003 * 109.46714 * 329.99659 * 22 20 19 42 42 H 1.07995 * 119.96902 * 179.97438 * 23 19 18 43 43 H 1.07993 * 120.03384 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.6303 -0.5440 4.4120 10 1 1.3442 -0.9489 5.1122 11 1 2.4878 -2.5653 3.7123 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2225 -2.3469 14 6 2.5885 -0.5216 -3.5557 15 6 1.9015 -0.4895 -4.6896 16 6 0.7400 0.4137 -4.8244 17 6 -0.3940 -0.0047 -5.5229 18 6 -1.4776 0.8381 -5.6427 19 6 -1.4382 2.1081 -5.0779 20 7 -2.5348 2.9614 -5.2059 21 6 -2.4946 4.2999 -4.6119 22 6 -3.7263 2.5188 -5.9345 23 6 -0.3081 2.5297 -4.3861 24 6 0.7764 1.6892 -4.2580 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7081 1.1610 3.4844 29 1 1.4495 -1.4980 -1.4100 30 1 1.0872 0.6163 -2.5525 31 1 2.7589 1.0461 -2.1182 32 1 3.5105 -1.0811 -3.4985 33 1 2.1912 -1.1235 -5.5146 34 1 -0.4236 -0.9895 -5.9653 35 1 -2.3567 0.5135 -6.1795 36 1 -1.6693 4.8650 -5.0449 37 1 -3.4333 4.8157 -4.8145 38 1 -2.3513 4.2152 -3.5347 39 1 -4.4155 2.0338 -5.2433 40 1 -4.2146 3.3803 -6.3900 41 1 -3.4351 1.8129 -6.7124 42 1 -0.2803 3.5167 -3.9488 43 1 1.6537 2.0170 -3.7202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170773.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:36 Heat of formation + Delta-G solvation = 56.688229 kcal Electronic energy + Delta-G solvation = -20738.060837 eV Core-core repulsion = 17783.763916 eV Total energy + Delta-G solvation = -2954.296920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.64698 -37.18490 -35.77991 -33.74131 -31.93915 -31.10711 -29.37560 -28.26095 -27.88422 -25.17737 -24.92145 -23.78600 -22.00919 -20.87200 -20.07374 -18.87729 -17.18031 -16.27584 -15.90467 -15.21297 -15.19755 -14.93744 -14.62974 -13.97484 -13.71840 -13.53612 -13.20219 -13.18770 -12.83032 -12.69626 -12.44081 -12.22434 -12.07914 -11.87618 -11.60102 -11.33524 -10.91257 -10.85701 -10.73522 -10.49651 -10.34808 -10.07199 -9.96513 -9.76192 -8.94440 -8.75004 -8.70263 -8.30082 -7.16667 -6.95599 -5.92388 -3.95393 1.43754 1.62233 2.72527 3.06081 3.36707 3.42396 3.47163 4.08789 4.49674 4.80041 4.86427 5.06711 5.09317 5.15452 5.19616 5.35305 5.39003 5.41756 5.48311 5.55415 5.57669 5.67738 5.71504 5.81628 6.00236 6.15890 6.27695 6.32848 6.45442 6.52112 6.74644 6.79404 6.92735 6.95048 6.98570 7.16347 7.19784 7.20693 7.48233 7.50909 7.81760 7.96041 8.35725 8.64063 8.71405 9.12118 9.69683 11.14552 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.020144 B = 0.003992 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.672696 B = 7013.058728 C = 7944.589845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.212 3.788 3 H 0.032 0.968 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.682 5.682 13 C 0.071 3.929 14 C -0.125 4.125 15 C -0.136 4.136 16 C -0.106 4.106 17 C -0.065 4.065 18 C -0.201 4.201 19 C 0.209 3.791 20 N -0.641 5.641 21 C 0.096 3.904 22 C 0.095 3.905 23 C -0.195 4.195 24 C -0.054 4.054 25 H 0.026 0.974 26 H 0.005 0.995 27 H 0.087 0.913 28 H 0.258 0.742 29 H 0.325 0.675 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.120 0.880 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.889 4.336 -18.571 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.105 3.895 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.312 5.312 13 C -0.058 4.058 14 C -0.144 4.144 15 C -0.155 4.155 16 C -0.108 4.108 17 C -0.084 4.084 18 C -0.223 4.223 19 C 0.109 3.891 20 N -0.353 5.353 21 C -0.047 4.047 22 C -0.049 4.049 23 C -0.217 4.217 24 C -0.073 4.073 25 H 0.045 0.955 26 H 0.024 0.976 27 H 0.106 0.894 28 H 0.068 0.932 29 H 0.141 0.859 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.138 0.862 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.463 4.676 -18.260 19.926 hybrid contribution -0.770 -0.300 0.723 1.098 sum -7.233 4.376 -17.537 19.468 Atomic orbital electron populations 1.22402 1.00729 0.99091 1.00381 1.19157 0.89586 0.94308 0.86493 0.95035 1.21190 1.29997 1.12372 0.89660 0.91972 1.24955 0.95386 0.95252 0.99000 1.69898 1.37411 1.23330 1.23204 0.86514 0.78409 0.80053 0.82495 1.20795 1.21467 1.19942 1.60756 1.58082 1.09147 1.03204 1.21418 0.99049 0.95674 0.89637 1.23447 0.98300 0.98846 0.93762 1.21508 0.95762 0.99818 0.98363 1.18817 0.95163 0.94639 1.02144 1.20944 0.92155 0.98355 0.96938 1.20526 1.00455 0.93856 1.07461 1.17846 0.87021 0.89891 0.94372 1.46254 1.14662 1.14602 1.59814 1.21586 1.01862 0.82957 0.98293 1.21628 0.86991 1.00237 0.96001 1.20568 0.93927 1.01268 1.05922 1.21207 0.97886 0.92591 0.95587 0.95495 0.97600 0.89415 0.93171 0.85855 0.93897 0.91367 0.86676 0.86977 0.86289 0.86372 0.92894 0.91145 0.92566 0.93550 0.91818 0.91416 0.86226 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 8.94 37.16 0.33 -3.88 16 2 C 0.21 5.54 2.57 -68.86 -0.18 5.36 16 3 H 0.03 0.90 7.80 -51.93 -0.40 0.49 16 4 C -0.49 -14.06 8.84 -34.44 -0.30 -14.36 16 5 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 6 C 0.05 1.54 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -26.25 11.32 55.43 0.63 -25.62 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.68 -15.23 6.22 -109.22 -0.68 -15.91 16 13 C 0.07 1.34 4.23 -4.98 -0.02 1.32 16 14 C -0.12 -1.96 9.72 -36.21 -0.35 -2.31 16 15 C -0.14 -1.92 9.78 -37.60 -0.37 -2.28 16 16 C -0.11 -1.56 5.15 -104.99 -0.54 -2.10 16 17 C -0.07 -0.87 9.77 -39.23 -0.38 -1.26 16 18 C -0.20 -2.59 9.19 -39.44 -0.36 -2.95 16 19 C 0.21 2.82 6.55 -83.75 -0.55 2.27 16 20 N -0.64 -7.16 3.40 -187.51 -0.64 -7.80 16 21 C 0.10 0.88 9.39 59.84 0.56 1.44 16 22 C 0.09 0.79 10.15 59.85 0.61 1.39 16 23 C -0.19 -2.77 9.29 -39.44 -0.37 -3.14 16 24 C -0.05 -0.81 7.30 -39.23 -0.29 -1.10 16 25 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 26 H 0.00 0.12 7.45 -51.92 -0.39 -0.27 16 27 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.33 7.06 8.46 -39.29 -0.33 6.72 16 30 H 0.04 0.83 4.12 -51.93 -0.21 0.62 16 31 H 0.07 1.32 7.90 -51.93 -0.41 0.90 16 32 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 33 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.12 1.26 6.12 -52.49 -0.32 0.94 16 36 H 0.05 0.46 7.94 -51.93 -0.41 0.04 16 37 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16 38 H 0.06 0.56 7.94 -51.93 -0.41 0.15 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 41 H 0.07 0.52 6.18 -51.93 -0.32 0.20 16 42 H 0.12 1.55 6.71 -52.49 -0.35 1.20 16 43 H 0.13 1.88 6.34 -52.49 -0.33 1.55 16 LS Contribution 343.32 15.07 5.17 5.17 Total: -1.00 -30.82 343.32 -9.53 -40.35 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.69 Total: 7.06 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -2.30 Total: -20.15 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.69 Total: -49.33 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.82 -9.53 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170773.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.039 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds