Wall clock time and date at job start Mon Mar 30 2020 20:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86794 * 120.00483 * 2 1 4 4 H 1.48496 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99736 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99549 * 3 2 1 7 7 C 1.40037 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99630 * 179.97438 * 7 2 1 9 9 C 1.41435 * 119.99820 * 0.27902 * 7 2 1 10 10 C 1.40453 * 119.77320 * 179.45025 * 9 7 2 11 11 C 1.39363 * 118.82744 * 179.73356 * 10 9 7 12 12 C 1.48292 * 120.82402 * 180.25613 * 11 10 9 13 13 C 1.39357 * 120.14734 * 310.00393 * 12 11 10 14 14 C 1.37973 * 119.95425 * 179.70029 * 13 12 11 15 15 C 1.38406 * 120.24770 * 0.59922 * 14 13 12 16 16 C 1.38244 * 120.30065 * 359.67621 * 15 14 13 17 17 Cl 1.73605 * 119.98098 * 180.02562 * 16 15 14 18 18 C 1.38715 * 120.04420 * 0.02562 * 16 15 14 19 19 O 1.35840 * 120.12819 * 180.02562 * 18 16 15 20 20 C 1.40083 * 118.34869 * 0.52797 * 11 10 9 21 21 C 1.38467 * 119.41889 * 359.73324 * 20 11 10 22 22 N 1.31498 * 121.15341 * 359.97438 * 21 20 11 23 23 H 0.97000 * 119.99125 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.58177 * 359.97438 * 10 9 7 25 25 H 1.08001 * 120.02138 * 359.97438 * 13 12 11 26 26 H 1.07990 * 119.87513 * 180.29788 * 14 13 12 27 27 H 1.07999 * 119.84926 * 179.69910 * 15 14 13 28 28 H 0.96697 * 114.00641 * 269.97747 * 19 18 16 29 29 H 1.07999 * 120.28728 * 179.70798 * 20 11 10 30 30 H 1.08007 * 119.42354 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3462 -0.0006 5 1 1.8829 2.3963 -1.2126 6 1 1.8828 2.3965 1.2124 7 6 2.0075 -1.2128 0.0005 8 1 3.0876 -1.2128 0.0001 9 6 1.3003 -2.4376 -0.0049 10 6 2.0072 -3.6512 -0.0160 11 6 1.2905 -4.8464 -0.0155 12 6 1.9919 -6.1530 -0.0213 13 6 3.0015 -6.4012 -0.9493 14 6 3.6556 -7.6160 -0.9471 15 6 3.3047 -8.5952 -0.0341 16 6 2.3008 -8.3622 0.8874 17 17 1.8678 -9.5961 2.0293 18 6 1.6392 -7.1430 0.9002 19 8 0.6529 -6.9120 1.8052 20 6 -0.1089 -4.7828 -0.0152 21 6 -0.7336 -3.5471 -0.0099 22 7 -0.0362 -2.4323 -0.0045 23 1 -0.4849 0.8401 -0.0004 24 1 3.0872 -3.6579 -0.0209 25 1 3.2747 -5.6416 -1.6667 26 1 4.4411 -7.8053 -1.6636 27 1 3.8177 -9.5456 -0.0413 28 1 -0.2292 -7.1625 1.4983 29 1 -0.6953 -5.6897 -0.0196 30 1 -1.8125 -3.4980 -0.0092 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242365708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:07:54 Heat of formation + Delta-G solvation = 5.405465 kcal Electronic energy + Delta-G solvation = -17778.000169 eV Core-core repulsion = 14756.970680 eV Total energy + Delta-G solvation = -3021.029489 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 275.045 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.81114 -37.93167 -36.51527 -36.34581 -33.74605 -32.24465 -30.05215 -29.73219 -28.62382 -25.74042 -23.34635 -22.46616 -21.27003 -20.66982 -18.29155 -17.47665 -16.18194 -15.91656 -15.47488 -15.08554 -14.51919 -14.22605 -14.05601 -13.92979 -13.00771 -12.75574 -12.48097 -12.25701 -12.02841 -11.73451 -11.40654 -11.22242 -11.17249 -10.99637 -10.82961 -10.49833 -10.31315 -9.94893 -9.46646 -8.93079 -8.52043 -7.83503 -7.69841 -7.62674 -6.44763 -4.57609 1.17563 1.21391 2.16292 2.70594 2.85459 3.07253 3.11425 3.14590 3.70727 3.91725 4.29152 4.70178 4.89025 5.07917 5.30260 5.38094 5.68863 5.87457 5.89004 6.02613 6.14961 6.31997 6.37044 6.51251 6.65716 6.76639 6.84064 7.07623 7.25769 7.44984 7.58335 7.81430 7.93383 8.17844 8.59970 8.85958 10.06083 10.27317 Molecular weight = 275.05amu Principal moments of inertia in cm(-1) A = 0.033036 B = 0.004300 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.369178 B = 6509.771910 C = 6932.039243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.431 4.431 8 H 0.084 0.916 9 C 0.255 3.745 10 C -0.250 4.250 11 C 0.003 3.997 12 C -0.030 4.030 13 C -0.092 4.092 14 C -0.118 4.118 15 C -0.112 4.112 16 C -0.064 4.064 17 Cl -0.070 7.070 18 C 0.124 3.876 19 O -0.475 6.475 20 C -0.295 4.295 21 C 0.126 3.874 22 N -0.482 5.482 23 H 0.273 0.727 24 H 0.101 0.899 25 H 0.135 0.865 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.388 0.612 29 H 0.090 0.910 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 -12.283 -1.243 12.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.335 5.335 2 C -0.157 4.157 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.102 0.898 9 C 0.131 3.869 10 C -0.273 4.273 11 C -0.003 4.003 12 C -0.030 4.030 13 C -0.111 4.111 14 C -0.136 4.136 15 C -0.131 4.131 16 C -0.091 4.091 17 Cl -0.041 7.041 18 C 0.078 3.922 19 O -0.285 6.285 20 C -0.318 4.318 21 C -0.039 4.039 22 N -0.194 5.194 23 H 0.084 0.916 24 H 0.119 0.881 25 H 0.152 0.848 26 H 0.150 0.850 27 H 0.149 0.851 28 H 0.245 0.755 29 H 0.108 0.892 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.286 -11.205 -0.776 11.702 hybrid contribution 0.343 -0.484 -0.120 0.605 sum 3.629 -11.689 -0.895 12.272 Atomic orbital electron populations 1.70144 1.07199 1.27734 1.28471 1.26072 0.94913 1.01106 0.93572 0.86277 0.80846 0.81147 0.78611 1.18375 1.19790 1.19770 1.19670 0.94299 0.89359 1.42850 0.89763 1.18536 0.88342 0.91619 0.88434 1.21798 0.98450 0.92353 1.14667 1.18337 0.93134 0.89764 0.99063 1.19416 0.96144 0.94093 0.93396 1.21356 0.94504 0.97110 0.98101 1.21017 1.00340 0.93222 0.99044 1.20892 0.96821 1.00336 0.95048 1.21305 1.01559 0.90132 0.96079 1.98344 1.92661 1.53111 1.59971 1.18217 0.92980 0.90278 0.90734 1.84833 1.17776 1.86597 1.39315 1.21113 0.92918 0.97698 1.20100 1.22431 0.98798 0.88589 0.94109 1.68726 1.07221 1.26782 1.16714 0.91612 0.88127 0.84756 0.85031 0.85061 0.75525 0.89216 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.86 11.46 55.55 0.64 -18.22 16 2 C 0.07 1.73 5.50 -17.34 -0.10 1.64 16 3 Si 0.91 18.37 29.56 -169.99 -5.02 13.35 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.43 -11.39 9.14 -37.69 -0.34 -11.74 16 8 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 9 C 0.26 6.89 6.55 -85.03 -0.56 6.33 16 10 C -0.25 -6.02 9.37 -38.33 -0.36 -6.38 16 11 C 0.00 0.07 5.29 -104.65 -0.55 -0.48 16 12 C -0.03 -0.54 5.52 -104.77 -0.58 -1.12 16 13 C -0.09 -1.42 9.54 -39.26 -0.37 -1.80 16 14 C -0.12 -1.47 10.03 -39.62 -0.40 -1.87 16 15 C -0.11 -1.41 9.81 -39.52 -0.39 -1.80 16 16 C -0.06 -0.92 6.33 -39.40 -0.25 -1.17 16 17 Cl -0.07 -0.91 28.50 -51.86 -1.48 -2.39 16 18 C 0.12 2.08 6.63 -38.83 -0.26 1.82 16 19 O -0.48 -7.93 11.60 -19.24 -0.22 -8.15 16 20 C -0.30 -6.34 8.91 -38.81 -0.35 -6.68 16 21 C 0.13 2.98 11.17 -17.61 -0.20 2.79 16 22 N -0.48 -13.11 7.85 -11.21 -0.09 -13.20 16 23 H 0.27 6.49 8.29 -40.82 -0.34 6.15 16 24 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 25 H 0.13 1.98 8.05 -52.49 -0.42 1.56 16 26 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 27 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.39 4.96 8.30 45.56 0.38 5.34 16 29 H 0.09 1.64 7.20 -52.49 -0.38 1.27 16 30 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 LS Contribution 286.00 15.07 4.31 4.31 Total: -1.00 -29.78 286.00 -8.22 -38.00 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -1.66 Total: 6.76 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -4.70 Total: -20.45 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.55 Total: -31.42 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -0.22 Total: -8.15 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.02 Total: 13.35 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.48 Total: -2.39 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.78 -8.22 -38.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242365708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.408 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds