Wall clock time and date at job start Mon Mar 30 2020 20:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30789 * 1 3 3 Si 1.86805 * 120.00268 * 2 1 4 4 H 1.48499 * 109.47338 * 270.00191 * 3 2 1 5 5 H 1.48496 * 109.46787 * 30.00329 * 3 2 1 6 6 H 1.48501 * 109.47036 * 149.99887 * 3 2 1 7 7 C 1.40046 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00295 * 195.44950 * 7 2 1 9 9 C 1.40869 * 119.99735 * 15.44797 * 7 2 1 10 10 C 1.40722 * 120.31813 * 25.33913 * 9 7 2 11 11 C 1.37627 * 119.84380 * 179.97438 * 10 9 7 12 12 F 1.35102 * 119.74494 * 180.02562 * 11 10 9 13 13 C 1.39197 * 120.50846 * 359.75550 * 11 10 9 14 14 C 1.37993 * 120.65550 * 0.50416 * 13 11 10 15 15 C 1.39174 * 120.12948 * 359.49112 * 14 13 11 16 16 C 1.47806 * 120.25401 * 180.27280 * 15 14 13 17 17 C 1.39593 * 120.12683 * 65.00122 * 16 15 14 18 18 C 1.38523 * 119.80226 * 179.97438 * 17 16 15 19 19 N 1.39817 * 119.97188 * 179.97438 * 18 17 16 20 20 C 1.39086 * 120.05405 * 359.97438 * 18 17 16 21 21 C 1.38218 * 120.26503 * 359.97438 * 20 18 17 22 22 C 1.38220 * 120.19886 * 359.78526 * 21 20 18 23 23 F 1.35102 * 120.03414 * 180.25754 * 22 21 20 24 24 H 0.97003 * 119.99452 * 359.97438 * 1 2 3 25 25 H 1.07993 * 120.07796 * 359.95631 * 10 9 7 26 26 H 1.08004 * 119.67040 * 180.25448 * 13 11 10 27 27 H 1.07997 * 119.93563 * 179.76639 * 14 13 11 28 28 H 1.08003 * 120.09883 * 359.95633 * 17 16 15 29 29 H 0.96998 * 120.00134 * 0.02562 * 19 18 17 30 30 H 0.97006 * 119.99956 * 179.97438 * 19 18 17 31 31 H 1.08006 * 119.87000 * 180.02562 * 20 18 17 32 32 H 1.08005 * 119.89925 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.4895 2.0465 -1.4000 5 1 1.4395 2.6526 0.7001 6 1 3.5395 1.4401 0.7001 7 6 2.0081 -1.2128 -0.0005 8 1 3.0588 -1.2299 0.2486 9 6 1.3418 -2.4106 -0.3260 10 6 0.1922 -2.3861 -1.1372 11 6 -0.4508 -3.5622 -1.4496 12 9 -1.5540 -3.5364 -2.2289 13 6 0.0301 -4.7785 -0.9733 14 6 1.1525 -4.8262 -0.1720 15 6 1.8238 -3.6533 0.1605 16 6 3.0299 -3.7017 1.0136 17 6 4.1856 -4.3380 0.5575 18 6 5.3122 -4.3790 1.3625 19 7 6.4716 -5.0158 0.9094 20 6 5.2911 -3.7872 2.6210 21 6 4.1484 -3.1556 3.0746 22 6 3.0198 -3.1040 2.2783 23 9 1.9064 -2.4812 2.7230 24 1 -0.4849 0.8401 0.0004 25 1 -0.1848 -1.4467 -1.5135 26 1 -0.4827 -5.6937 -1.2302 27 1 1.5134 -5.7760 0.1942 28 1 4.2013 -4.7973 -0.4199 29 1 6.4869 -5.4284 0.0317 30 1 7.2609 -5.0444 1.4726 31 1 6.1713 -3.8205 3.2459 32 1 4.1387 -2.6975 4.0527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243287193.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:02:59 Heat of formation + Delta-G solvation = -71.392627 kcal Electronic energy + Delta-G solvation = -20571.233770 eV Core-core repulsion = 17130.910480 eV Total energy + Delta-G solvation = -3440.323290 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.58195 -49.29284 -40.21777 -38.89499 -35.65001 -35.03767 -32.91150 -31.67843 -29.84715 -28.64134 -27.32444 -24.27492 -23.22247 -22.85670 -21.52859 -19.50629 -18.23950 -17.94916 -17.82217 -17.62004 -16.75240 -16.46698 -16.24899 -16.08397 -15.95042 -15.58501 -14.81678 -14.63969 -14.41363 -14.06236 -13.81297 -13.55997 -13.49645 -13.36519 -13.12146 -12.84371 -12.46267 -12.23626 -12.09603 -11.61952 -11.47398 -11.12053 -10.97654 -9.79353 -9.51729 -9.09915 -8.69431 -8.16954 -6.43726 0.32892 0.62616 0.84597 0.95371 1.34301 1.46993 1.48249 2.15760 2.59558 2.92695 3.11381 3.52786 3.76930 3.82522 4.04053 4.12749 4.38216 4.46242 4.55127 4.64267 4.99614 5.02763 5.09682 5.11754 5.26672 5.35815 5.48485 5.61578 5.66339 5.73076 5.80201 5.97689 6.12390 6.24487 6.54290 6.69911 6.81877 6.86371 7.16053 8.23206 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.013421 B = 0.008571 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.843344 B = 3266.035745 C = 4629.437828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.035 3.965 3 Si 0.977 3.023 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.453 4.453 8 H 0.078 0.922 9 C 0.124 3.876 10 C -0.227 4.227 11 C 0.094 3.906 12 F -0.167 7.167 13 C -0.278 4.278 14 C -0.044 4.044 15 C -0.197 4.197 16 C 0.005 3.995 17 C -0.180 4.180 18 C 0.210 3.790 19 N -0.864 5.864 20 C -0.179 4.179 21 C -0.112 4.112 22 C 0.019 3.981 23 F -0.160 7.160 24 H 0.291 0.709 25 H 0.112 0.888 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.405 0.595 30 H 0.410 0.590 31 H 0.159 0.841 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.157 -5.549 3.297 13.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.182 4.182 3 Si 0.797 3.203 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.179 1.179 7 C -0.481 4.481 8 H 0.096 0.904 9 C 0.121 3.879 10 C -0.247 4.247 11 C 0.075 3.925 12 F -0.146 7.146 13 C -0.298 4.298 14 C -0.062 4.062 15 C -0.199 4.199 16 C 0.004 3.996 17 C -0.203 4.203 18 C 0.105 3.895 19 N -0.405 5.405 20 C -0.202 4.202 21 C -0.131 4.131 22 C -0.002 4.002 23 F -0.139 7.139 24 H 0.102 0.898 25 H 0.130 0.870 26 H 0.146 0.854 27 H 0.150 0.850 28 H 0.148 0.852 29 H 0.235 0.765 30 H 0.240 0.760 31 H 0.177 0.823 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 11.840 -5.358 3.312 13.412 hybrid contribution -0.605 0.876 -0.342 1.118 sum 11.236 -4.482 2.970 12.456 Atomic orbital electron populations 1.69855 1.09179 1.30901 1.33908 1.26855 0.95445 1.04815 0.91078 0.85265 0.79292 0.75899 0.79820 1.18193 1.19121 1.17931 1.19606 0.97293 0.91401 1.39842 0.90388 1.17557 0.89962 0.92696 0.87690 1.21222 1.01804 0.95890 1.05795 1.17983 0.84626 0.95805 0.94114 1.91321 1.52171 1.97670 1.73418 1.20478 1.03359 0.95253 1.10701 1.20693 0.93541 0.96890 0.95068 1.18835 1.00583 0.93546 1.06895 1.18553 0.93858 0.95755 0.91460 1.20638 0.91522 1.07034 1.01095 1.17666 0.87392 0.91975 0.92484 1.42311 1.12020 1.63738 1.22442 1.20634 0.99072 1.04373 0.96098 1.20992 0.91414 1.00530 1.00165 1.18072 0.84723 1.02261 0.95179 1.91412 1.52112 1.81128 1.89254 0.89831 0.86970 0.85397 0.84995 0.85223 0.76531 0.75999 0.82339 0.83694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.54 10.87 21.84 0.24 -43.30 16 2 C 0.03 1.77 5.19 85.29 0.44 2.21 16 3 Si 0.98 38.69 29.59 68.60 2.03 40.72 16 4 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.45 -24.27 7.46 23.35 0.17 -24.09 16 8 H 0.08 4.12 7.07 -2.91 -0.02 4.10 16 9 C 0.12 6.73 5.46 -21.12 -0.12 6.61 16 10 C -0.23 -12.55 8.65 22.73 0.20 -12.35 16 11 C 0.09 4.78 7.28 22.36 0.16 4.95 16 12 F -0.17 -8.17 17.26 44.97 0.78 -7.39 16 13 C -0.28 -12.59 10.01 22.44 0.22 -12.37 16 14 C -0.04 -1.92 9.71 22.44 0.22 -1.70 16 15 C -0.20 -9.50 5.06 -19.62 -0.10 -9.60 16 16 C 0.01 0.22 4.38 -20.02 -0.09 0.13 16 17 C -0.18 -6.06 9.59 22.67 0.22 -5.84 16 18 C 0.21 5.57 6.75 38.14 0.26 5.82 16 19 N -0.86 -14.68 9.09 -51.41 -0.47 -15.15 16 20 C -0.18 -4.61 9.89 22.47 0.22 -4.39 16 21 C -0.11 -3.59 10.00 22.26 0.22 -3.37 16 22 C 0.02 0.78 6.48 22.67 0.15 0.93 16 23 F -0.16 -7.89 16.10 44.97 0.72 -7.17 16 24 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 25 H 0.11 6.52 6.13 -2.91 -0.02 6.51 16 26 H 0.13 5.00 8.06 -2.91 -0.02 4.98 16 27 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 28 H 0.13 4.06 8.06 -2.91 -0.02 4.03 16 29 H 0.41 5.80 8.84 -92.71 -0.82 4.98 16 30 H 0.41 4.68 8.84 -92.70 -0.82 3.86 16 31 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -64.75 289.57 5.04 -59.71 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -0.44 Total: 25.64 kcal Atomic # 6 Polarization: -55.24 SS G_CDS: 2.18 Total: -53.06 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.23 Total: -58.46 kcal Atomic # 9 Polarization: -16.06 SS G_CDS: 1.50 Total: -14.56 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -64.75 5.04 -59.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243287193.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.684 kcal (2) G-P(sol) polarization free energy of solvation -64.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds