Wall clock time and date at job start Mon Mar 30 2020 20:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38584 * 120.86541 * 2 1 4 4 F 1.35108 * 120.36468 * 0.02562 * 3 2 1 5 5 C 1.38568 * 119.26209 * 180.29910 * 3 2 1 6 6 N 1.31942 * 121.05517 * 359.72344 * 5 3 2 7 7 C 1.31648 * 121.90536 * 0.02562 * 6 5 3 8 8 C 1.39647 * 120.61240 * 359.97438 * 7 6 5 9 9 C 1.47901 * 120.55350 * 180.02562 * 8 7 6 10 10 C 1.39047 * 120.25515 * 69.11168 * 9 8 7 11 11 C 1.38160 * 120.17664 * 180.27052 * 10 9 8 12 12 C 1.38793 * 120.71303 * 359.45137 * 11 10 9 13 13 C 1.37751 * 120.52148 * 0.29544 * 12 11 10 14 14 F 1.35093 * 120.10247 * 180.02562 * 13 12 11 15 15 C 1.41033 * 119.79415 * 359.97438 * 13 12 11 16 16 C 1.40796 * 120.34223 * 179.97438 * 15 13 12 17 17 H 1.07998 * 120.00177 * 138.15373 * 16 15 13 18 18 C 1.40076 * 120.00000 * 318.14298 * 16 15 13 19 19 N 1.30782 * 120.00254 * 160.65120 * 18 16 15 20 20 Si 1.86804 * 119.99959 * 340.64727 * 18 16 15 21 21 H 1.48493 * 109.47090 * 94.45294 * 20 18 16 22 22 H 1.48498 * 109.47273 * 214.45738 * 20 18 16 23 23 H 1.48505 * 109.47008 * 334.45439 * 20 18 16 24 24 H 1.09000 * 109.46931 * 275.74022 * 1 2 3 25 25 H 1.08999 * 109.47496 * 35.74629 * 1 2 3 26 26 H 1.09002 * 109.46843 * 155.74285 * 1 2 3 27 27 H 1.08001 * 119.47404 * 179.70293 * 5 3 2 28 28 H 1.08001 * 119.69604 * 179.97438 * 7 6 5 29 29 H 1.08004 * 119.91527 * 0.02562 * 10 9 8 30 30 H 1.08006 * 119.64215 * 179.71897 * 11 10 9 31 31 H 1.08004 * 119.74301 * 180.27003 * 12 11 10 32 32 H 0.97001 * 120.00313 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2180 1.1896 0.0000 4 9 1.5677 2.3739 0.0005 5 6 3.6031 1.1508 -0.0063 6 7 4.2518 0.0019 -0.0068 7 6 3.6208 -1.1535 -0.0019 8 6 2.2252 -1.2015 0.0046 9 6 1.5176 -2.5002 0.0106 10 6 1.5636 -3.3179 1.1344 11 6 0.9066 -4.5333 1.1362 12 6 0.1846 -4.9505 0.0268 13 6 0.1152 -4.1612 -1.1001 14 9 -0.5905 -4.5754 -2.1750 15 6 0.7823 -2.9189 -1.1276 16 6 0.7195 -2.1032 -2.2735 17 1 0.5854 -1.0366 -2.1704 18 6 0.8314 -2.6751 -3.5473 19 7 0.4071 -2.0211 -4.5974 20 14 1.5866 -4.3721 -3.7463 21 1 0.5101 -5.3948 -3.7573 22 1 2.3395 -4.4320 -5.0248 23 1 2.5108 -4.6383 -2.6147 24 1 -0.3633 0.1028 1.0225 25 1 -0.3634 0.8340 -0.6003 26 1 -0.3633 -0.9370 -0.4222 27 1 4.1606 2.0758 -0.0112 28 1 4.1877 -2.0727 -0.0030 29 1 2.1177 -3.0039 2.0066 30 1 0.9519 -5.1636 2.0121 31 1 -0.3266 -5.9017 0.0469 32 1 0.4842 -2.4172 -5.4794 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244837690.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:08:13 Heat of formation + Delta-G solvation = -39.433995 kcal Electronic energy + Delta-G solvation = -21012.261143 eV Core-core repulsion = 17573.323684 eV Total energy + Delta-G solvation = -3438.937460 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.59854 -47.83496 -39.78179 -37.58067 -33.98984 -33.45443 -31.37001 -30.41507 -28.72755 -27.35237 -25.39124 -23.35256 -21.88013 -21.18714 -20.41191 -18.01066 -17.15623 -16.84378 -15.93800 -15.81847 -15.71546 -15.49236 -15.03365 -14.51587 -14.13996 -13.52501 -13.37707 -13.31375 -13.02487 -12.59811 -12.41364 -12.22821 -12.11768 -11.93992 -11.66799 -11.37266 -10.99842 -10.78658 -10.45735 -10.28608 -9.81358 -9.29445 -9.18929 -8.88916 -8.49211 -7.76086 -7.70126 -7.06509 -4.70182 1.33320 1.52055 2.18420 2.28960 3.13217 3.14970 3.21751 3.92189 4.03420 4.25233 4.45970 4.82552 4.94021 5.09724 5.13724 5.23460 5.49448 5.69248 5.77720 5.90826 6.02644 6.04257 6.15644 6.25494 6.27968 6.51663 6.55151 6.76117 6.92439 6.99217 7.09986 7.23085 7.34983 7.42483 7.77969 8.12516 8.23475 8.34255 8.54940 9.92611 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.018151 B = 0.008158 C = 0.007046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.259854 B = 3431.400643 C = 3972.900881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.061 4.061 3 C 0.040 3.960 4 F -0.137 7.137 5 C 0.053 3.947 6 N -0.466 5.466 7 C 0.092 3.908 8 C -0.003 4.003 9 C -0.147 4.147 10 C -0.067 4.067 11 C -0.214 4.214 12 C -0.108 4.108 13 C -0.020 4.020 14 F -0.144 7.144 15 C 0.084 3.916 16 C -0.453 4.453 17 H 0.104 0.896 18 C 0.092 3.908 19 N -0.791 5.791 20 Si 0.908 3.092 21 H -0.257 1.257 22 H -0.292 1.292 23 H -0.251 1.251 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.099 0.901 27 H 0.157 0.843 28 H 0.159 0.841 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.229 0.541 7.154 7.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.069 4.069 3 C 0.019 3.981 4 F -0.116 7.116 5 C -0.105 4.105 6 N -0.173 5.173 7 C -0.065 4.065 8 C -0.005 4.005 9 C -0.149 4.149 10 C -0.085 4.085 11 C -0.233 4.233 12 C -0.127 4.127 13 C -0.040 4.040 14 F -0.123 7.123 15 C 0.080 3.920 16 C -0.480 4.480 17 H 0.122 0.878 18 C -0.130 4.130 19 N -0.414 5.414 20 Si 0.733 3.267 21 H -0.182 1.182 22 H -0.220 1.220 23 H -0.174 1.174 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.118 0.882 27 H 0.175 0.825 28 H 0.177 0.823 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.030 0.672 6.812 7.486 hybrid contribution -0.899 -0.493 -0.567 1.171 sum 2.132 0.179 6.245 6.601 Atomic orbital electron populations 1.20899 0.89452 1.05302 1.01977 1.20585 0.97823 0.90945 0.97587 1.18608 0.91708 0.81137 1.06655 1.91454 1.81665 1.44313 1.94141 1.22642 0.89466 0.97463 1.00896 1.67570 1.39957 0.97879 1.11938 1.22990 0.91187 0.95668 0.96685 1.19430 0.93216 0.92463 0.95427 1.18230 1.04729 0.95049 0.96922 1.20693 0.98106 0.93762 0.95985 1.20160 1.06567 0.98278 0.98340 1.20724 1.00284 0.98625 0.93095 1.17873 1.01830 0.98832 0.85482 1.91219 1.77274 1.90031 1.53754 1.17526 0.90271 0.90271 0.93964 1.19373 1.42892 0.97274 0.88463 0.87784 1.26164 0.91902 0.99599 0.95314 1.69650 1.31658 1.39451 1.00638 0.86525 0.79483 0.82207 0.78444 1.18161 1.21993 1.17413 0.91305 0.91400 0.88239 0.82550 0.82337 0.87784 0.87486 0.87358 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 8.60 36.00 0.31 -1.85 16 2 C -0.06 -1.15 5.16 -103.84 -0.54 -1.69 16 3 C 0.04 0.71 7.28 -39.33 -0.29 0.42 16 4 F -0.14 -2.31 16.71 2.25 0.04 -2.27 16 5 C 0.05 0.88 11.16 -17.38 -0.19 0.68 16 6 N -0.47 -8.24 10.34 -12.83 -0.13 -8.38 16 7 C 0.09 1.66 10.95 -17.10 -0.19 1.48 16 8 C 0.00 -0.06 4.61 -104.76 -0.48 -0.55 16 9 C -0.15 -3.01 4.56 -104.27 -0.48 -3.49 16 10 C -0.07 -1.22 9.75 -39.31 -0.38 -1.61 16 11 C -0.21 -3.84 10.03 -39.40 -0.40 -4.23 16 12 C -0.11 -2.13 9.99 -39.55 -0.40 -2.52 16 13 C -0.02 -0.46 5.64 -38.70 -0.22 -0.68 16 14 F -0.14 -3.46 12.57 2.25 0.03 -3.43 16 15 C 0.08 1.93 3.72 -106.50 -0.40 1.54 16 16 C -0.45 -11.43 7.82 -37.93 -0.30 -11.73 16 17 H 0.10 2.73 5.69 -52.49 -0.30 2.43 16 18 C 0.09 2.35 4.99 -17.31 -0.09 2.27 16 19 N -0.79 -20.69 13.93 55.55 0.77 -19.92 16 20 Si 0.91 20.94 24.63 -169.99 -4.19 16.76 16 21 H -0.26 -5.92 6.14 56.52 0.35 -5.58 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.25 -5.79 7.11 56.52 0.40 -5.39 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.07 1.18 7.89 -51.93 -0.41 0.77 16 26 H 0.10 2.01 4.84 -51.93 -0.25 1.76 16 27 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 28 H 0.16 2.59 8.06 -52.49 -0.42 2.17 16 29 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 30 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.11 1.87 8.06 -52.48 -0.42 1.45 16 32 H 0.29 6.89 8.30 -40.82 -0.34 6.55 16 LS Contribution 277.93 15.07 4.19 4.19 Total: -1.00 -26.27 277.93 -6.00 -32.27 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -2.69 Total: 2.73 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -4.02 Total: -21.95 kcal Atomic # 7 Polarization: -28.93 SS G_CDS: 0.64 Total: -28.29 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.07 Total: -5.70 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.19 Total: 16.76 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -26.27 -6.00 -32.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244837690.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.165 kcal (2) G-P(sol) polarization free energy of solvation -26.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds