Wall clock time and date at job start Mon Mar 30 2020 20:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38584 * 120.86541 * 2 1 4 4 F 1.35108 * 120.36468 * 0.02562 * 3 2 1 5 5 C 1.38568 * 119.26209 * 180.29910 * 3 2 1 6 6 N 1.31942 * 121.05517 * 359.72344 * 5 3 2 7 7 C 1.31648 * 121.90536 * 0.02562 * 6 5 3 8 8 C 1.39647 * 120.61240 * 359.97438 * 7 6 5 9 9 C 1.47901 * 120.55350 * 180.02562 * 8 7 6 10 10 C 1.39047 * 120.25515 * 69.11168 * 9 8 7 11 11 C 1.38160 * 120.17664 * 180.27052 * 10 9 8 12 12 C 1.38793 * 120.71303 * 359.45137 * 11 10 9 13 13 C 1.37751 * 120.52148 * 0.29544 * 12 11 10 14 14 F 1.35093 * 120.10247 * 180.02562 * 13 12 11 15 15 C 1.41033 * 119.79415 * 359.97438 * 13 12 11 16 16 C 1.40796 * 120.34223 * 179.97438 * 15 13 12 17 17 H 1.07998 * 120.00177 * 138.15373 * 16 15 13 18 18 C 1.40076 * 120.00000 * 318.14298 * 16 15 13 19 19 N 1.30782 * 120.00254 * 160.65120 * 18 16 15 20 20 Si 1.86804 * 119.99959 * 340.64727 * 18 16 15 21 21 H 1.48493 * 109.47090 * 94.45294 * 20 18 16 22 22 H 1.48498 * 109.47273 * 214.45738 * 20 18 16 23 23 H 1.48505 * 109.47008 * 334.45439 * 20 18 16 24 24 H 1.09000 * 109.46931 * 275.74022 * 1 2 3 25 25 H 1.08999 * 109.47496 * 35.74629 * 1 2 3 26 26 H 1.09002 * 109.46843 * 155.74285 * 1 2 3 27 27 H 1.08001 * 119.47404 * 179.70293 * 5 3 2 28 28 H 1.08001 * 119.69604 * 179.97438 * 7 6 5 29 29 H 1.08004 * 119.91527 * 0.02562 * 10 9 8 30 30 H 1.08006 * 119.64215 * 179.71897 * 11 10 9 31 31 H 1.08004 * 119.74301 * 180.27003 * 12 11 10 32 32 H 0.97001 * 120.00313 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2180 1.1896 0.0000 4 9 1.5677 2.3739 0.0005 5 6 3.6031 1.1508 -0.0063 6 7 4.2518 0.0019 -0.0068 7 6 3.6208 -1.1535 -0.0019 8 6 2.2252 -1.2015 0.0046 9 6 1.5176 -2.5002 0.0106 10 6 1.5636 -3.3179 1.1344 11 6 0.9066 -4.5333 1.1362 12 6 0.1846 -4.9505 0.0268 13 6 0.1152 -4.1612 -1.1001 14 9 -0.5905 -4.5754 -2.1750 15 6 0.7823 -2.9189 -1.1276 16 6 0.7195 -2.1032 -2.2735 17 1 0.5854 -1.0366 -2.1704 18 6 0.8314 -2.6751 -3.5473 19 7 0.4071 -2.0211 -4.5974 20 14 1.5866 -4.3721 -3.7463 21 1 0.5101 -5.3948 -3.7573 22 1 2.3395 -4.4320 -5.0248 23 1 2.5108 -4.6383 -2.6147 24 1 -0.3633 0.1028 1.0225 25 1 -0.3634 0.8340 -0.6003 26 1 -0.3633 -0.9370 -0.4222 27 1 4.1606 2.0758 -0.0112 28 1 4.1877 -2.0727 -0.0030 29 1 2.1177 -3.0039 2.0066 30 1 0.9519 -5.1636 2.0121 31 1 -0.3266 -5.9017 0.0469 32 1 0.4842 -2.4172 -5.4794 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244837690.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:08:13 Heat of formation + Delta-G solvation = -53.147072 kcal Electronic energy + Delta-G solvation = -21012.855787 eV Core-core repulsion = 17573.323684 eV Total energy + Delta-G solvation = -3439.532103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.95676 -49.61474 -41.21187 -39.15145 -35.64932 -35.00916 -32.84720 -32.08297 -30.20257 -28.81162 -27.07692 -24.82793 -23.30162 -22.83525 -21.95137 -19.78154 -18.62480 -18.28077 -17.51168 -17.30801 -17.24412 -16.97170 -16.65089 -16.24452 -15.79370 -15.07270 -14.94761 -14.77690 -14.55258 -14.13284 -13.85785 -13.69669 -13.63015 -13.59114 -13.30218 -12.99002 -12.56573 -12.38962 -12.12175 -12.00405 -11.51149 -11.09260 -10.65548 -10.33032 -9.89407 -9.38593 -9.29662 -8.89379 -6.53937 -0.06919 0.08739 0.60688 0.63738 1.28043 1.32814 1.38315 2.09114 2.53787 2.65153 3.04753 3.23731 3.49743 3.69018 3.74154 3.82129 3.92190 4.22780 4.36607 4.52391 4.57427 4.63452 4.67335 4.82675 4.84100 4.91101 5.09972 5.26295 5.30799 5.43193 5.58377 5.68204 5.80200 5.82675 6.11556 6.31294 6.61623 6.75041 6.85723 8.16014 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.018151 B = 0.008158 C = 0.007046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.259854 B = 3431.400643 C = 3972.900881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.072 4.072 3 C 0.033 3.967 4 F -0.134 7.134 5 C 0.064 3.936 6 N -0.472 5.472 7 C 0.092 3.908 8 C -0.027 4.027 9 C -0.135 4.135 10 C -0.070 4.070 11 C -0.183 4.183 12 C -0.114 4.114 13 C -0.048 4.048 14 F -0.159 7.159 15 C 0.068 3.932 16 C -0.482 4.482 17 H 0.079 0.921 18 C 0.058 3.942 19 N -0.843 5.843 20 Si 0.945 3.055 21 H -0.261 1.261 22 H -0.287 1.287 23 H -0.251 1.251 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.192 0.808 28 H 0.175 0.825 29 H 0.140 0.860 30 H 0.152 0.848 31 H 0.135 0.865 32 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.544 -0.361 10.176 10.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.080 4.080 3 C 0.011 3.989 4 F -0.113 7.113 5 C -0.094 4.094 6 N -0.180 5.180 7 C -0.065 4.065 8 C -0.029 4.029 9 C -0.137 4.137 10 C -0.088 4.088 11 C -0.202 4.202 12 C -0.133 4.133 13 C -0.068 4.068 14 F -0.138 7.138 15 C 0.064 3.936 16 C -0.511 4.511 17 H 0.097 0.903 18 C -0.157 4.157 19 N -0.470 5.470 20 Si 0.770 3.230 21 H -0.186 1.186 22 H -0.214 1.214 23 H -0.175 1.175 24 H 0.109 0.891 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.209 0.791 28 H 0.192 0.808 29 H 0.157 0.843 30 H 0.170 0.830 31 H 0.153 0.847 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.352 -0.241 9.851 10.772 hybrid contribution -1.278 -0.224 -1.149 1.733 sum 3.074 -0.465 8.702 9.241 Atomic orbital electron populations 1.20821 0.89484 1.03799 1.03016 1.20735 0.98126 0.91592 0.97589 1.18680 0.92251 0.80892 1.07066 1.91461 1.81703 1.43951 1.94144 1.23188 0.89204 0.98396 0.98611 1.67670 1.39888 0.98084 1.12345 1.23223 0.90750 0.96594 0.95887 1.19485 0.93873 0.92199 0.97331 1.18520 1.03209 0.95479 0.96467 1.21150 0.97926 0.93460 0.96221 1.20774 1.02888 0.97897 0.98595 1.21125 1.00434 0.99381 0.92314 1.18318 1.02602 0.99561 0.86291 1.91174 1.77723 1.90156 1.54762 1.17679 0.90878 0.90684 0.94319 1.19253 1.46048 0.96404 0.89438 0.90284 1.26657 0.92188 1.01546 0.95337 1.69697 1.35190 1.41035 1.01036 0.85953 0.78757 0.79937 0.78391 1.18598 1.21376 1.17454 0.89051 0.91641 0.90782 0.79132 0.80762 0.84259 0.83043 0.84717 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.15 8.60 71.24 0.61 -3.54 16 2 C -0.07 -2.67 5.16 -19.36 -0.10 -2.77 16 3 C 0.03 1.10 7.28 22.43 0.16 1.26 16 4 F -0.13 -4.34 16.71 44.97 0.75 -3.58 16 5 C 0.06 1.95 11.16 84.76 0.95 2.90 16 6 N -0.47 -15.60 10.34 -194.50 -2.01 -17.61 16 7 C 0.09 3.15 10.95 85.06 0.93 4.08 16 8 C -0.03 -1.00 4.61 -19.96 -0.09 -1.10 16 9 C -0.13 -5.28 4.56 -19.63 -0.09 -5.36 16 10 C -0.07 -2.23 9.75 22.45 0.22 -2.01 16 11 C -0.18 -5.58 10.03 22.38 0.22 -5.36 16 12 C -0.11 -4.09 9.99 22.29 0.22 -3.87 16 13 C -0.05 -2.14 5.64 22.84 0.13 -2.01 16 14 F -0.16 -7.75 12.57 44.97 0.57 -7.18 16 15 C 0.07 3.13 3.72 -21.08 -0.08 3.05 16 16 C -0.48 -25.35 7.82 23.34 0.18 -25.17 16 17 H 0.08 4.41 5.69 -2.91 -0.02 4.39 16 18 C 0.06 3.12 4.99 85.30 0.43 3.54 16 19 N -0.84 -46.73 13.93 21.85 0.30 -46.43 16 20 Si 0.95 43.97 24.63 68.60 1.69 45.66 16 21 H -0.26 -12.11 6.14 99.48 0.61 -11.50 16 22 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 23 H -0.25 -11.42 7.11 99.48 0.71 -10.72 16 24 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 25 H 0.06 2.33 7.89 -2.39 -0.02 2.32 16 26 H 0.07 3.09 4.84 -2.39 -0.01 3.07 16 27 H 0.19 4.39 8.06 -2.91 -0.02 4.36 16 28 H 0.18 5.24 8.06 -2.91 -0.02 5.22 16 29 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 30 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 31 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 32 H 0.29 14.74 8.30 -92.71 -0.77 13.97 16 Total: -1.00 -58.72 277.93 6.07 -52.66 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 1.07 Total: 12.84 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 3.70 Total: -36.36 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -1.71 Total: -64.04 kcal Atomic # 9 Polarization: -12.08 SS G_CDS: 1.32 Total: -10.76 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.69 Total: 45.66 kcal Total: -58.72 6.07 -52.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244837690.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.489 kcal (2) G-P(sol) polarization free energy of solvation -58.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds