Wall clock time and date at job start Mon Mar 30 2020 20:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 120.00266 * 2 1 4 4 H 1.48499 * 109.47266 * 275.30323 * 3 2 1 5 5 H 1.48502 * 109.47023 * 35.30004 * 3 2 1 6 6 H 1.48500 * 109.47220 * 155.30065 * 3 2 1 7 7 C 1.39932 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99766 * 346.74823 * 7 2 1 9 9 C 1.41403 * 120.00078 * 166.74694 * 7 2 1 10 10 C 1.40780 * 120.20628 * 331.36194 * 9 7 2 11 11 C 1.37649 * 119.89016 * 180.02562 * 10 9 7 12 12 C 1.38536 * 120.31893 * 359.74345 * 11 10 9 13 13 C 1.39262 * 120.42753 * 0.51640 * 12 11 10 14 14 N 1.39862 * 119.95051 * 179.75685 * 13 12 11 15 15 C 1.34779 * 119.99886 * 326.46933 * 14 13 12 16 16 O 1.21584 * 120.00126 * 355.08715 * 15 14 13 17 17 C 1.47592 * 119.99509 * 175.09669 * 15 14 13 18 18 N 1.31879 * 126.46784 * 0.02562 * 17 15 14 19 19 N 1.28470 * 110.15482 * 179.69741 * 18 17 15 20 20 H 0.97001 * 124.92959 * 180.30768 * 19 18 17 21 21 C 1.35729 * 110.13431 * 0.46686 * 19 18 17 22 22 C 1.35540 * 107.12195 * 359.54149 * 21 19 18 23 23 F 1.35101 * 127.24296 * 180.29051 * 22 21 19 24 24 C 1.38298 * 120.09942 * 359.48884 * 13 12 11 25 25 H 0.97003 * 119.99603 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.06105 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.84064 * 180.02562 * 11 10 9 28 28 H 1.08001 * 119.78175 * 180.27678 * 12 11 10 29 29 H 0.96998 * 119.99895 * 146.45673 * 14 13 12 30 30 H 1.07996 * 126.43980 * 179.80787 * 21 19 18 31 31 H 1.08006 * 120.15984 * 180.23539 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3778 2.1111 -1.3941 5 1 1.5003 2.6177 0.8091 6 1 3.5914 1.4103 0.5850 7 6 2.0079 -1.2119 0.0005 8 1 1.4894 -2.1346 0.2154 9 6 3.3937 -1.2284 -0.2802 10 6 3.9598 -0.2431 -1.1112 11 6 5.3095 -0.2656 -1.3806 12 6 6.1155 -1.2507 -0.8335 13 6 5.5686 -2.2349 -0.0140 14 7 6.3907 -3.2276 0.5290 15 6 7.4507 -3.6810 -0.1691 16 8 7.6413 -3.2930 -1.3055 17 6 8.3800 -4.6487 0.4460 18 7 8.2956 -5.1525 1.6618 19 7 9.2650 -5.9692 1.8709 20 1 9.4073 -6.4635 2.6933 21 6 10.0631 -6.0372 0.7751 22 6 9.5302 -5.2117 -0.1586 23 9 9.9978 -4.9761 -1.4040 24 6 4.2147 -2.2290 0.2682 25 1 -0.4850 0.8401 -0.0004 26 1 3.3363 0.5293 -1.5367 27 1 5.7430 0.4909 -2.0179 28 1 7.1741 -1.2575 -1.0470 29 1 6.1980 -3.5896 1.4080 30 1 10.9529 -6.6394 0.6660 31 1 3.7901 -2.9897 0.9067 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001640869310.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:04 Heat of formation + Delta-G solvation = 22.680689 kcal Electronic energy + Delta-G solvation = -19825.294120 eV Core-core repulsion = 16408.970117 eV Total energy + Delta-G solvation = -3416.324003 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.77140 -42.93409 -39.66051 -37.40593 -34.51070 -33.25363 -32.11203 -30.85978 -30.26736 -28.75851 -25.15923 -24.56215 -22.30011 -21.37162 -21.09520 -19.73166 -19.11697 -17.72954 -17.14325 -16.60998 -16.12800 -15.97612 -15.48250 -15.12898 -14.82919 -14.58208 -14.28034 -14.06031 -13.50428 -12.83372 -12.63908 -12.57995 -12.03345 -11.67798 -11.32592 -11.03181 -10.73487 -10.60034 -10.22723 -9.87561 -9.76710 -9.60487 -9.35772 -9.23347 -8.96718 -7.66124 -7.12453 -6.89438 -4.47729 1.19038 1.54951 2.32409 2.55088 2.66534 3.15176 3.24845 3.27987 3.35982 3.48439 4.00430 4.02436 4.30844 4.51217 4.56347 4.86138 5.10891 5.45145 6.01913 6.08096 6.35924 6.39760 6.43635 6.55172 6.75058 6.79802 7.13783 7.29586 7.32609 7.50631 7.67995 7.86975 7.91912 8.12909 8.36351 8.48443 8.66385 8.83482 10.13153 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.039614 B = 0.003984 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.658045 B = 7026.810771 C = 7427.155738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.082 3.918 3 Si 0.914 3.086 4 H -0.272 1.272 5 H -0.295 1.295 6 H -0.240 1.240 7 C -0.446 4.446 8 H 0.090 0.910 9 C 0.105 3.895 10 C -0.240 4.240 11 C -0.067 4.067 12 C -0.230 4.230 13 C 0.166 3.834 14 N -0.651 5.651 15 C 0.593 3.407 16 O -0.502 6.502 17 C -0.022 4.022 18 N -0.233 5.233 19 N -0.370 5.370 20 H 0.456 0.544 21 C -0.040 4.040 22 C 0.039 3.961 23 F -0.099 7.099 24 C -0.228 4.228 25 H 0.285 0.715 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.409 0.591 30 H 0.199 0.801 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.102 -10.090 5.754 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.136 4.136 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.163 1.163 7 C -0.475 4.475 8 H 0.108 0.892 9 C 0.102 3.898 10 C -0.260 4.260 11 C -0.086 4.086 12 C -0.251 4.251 13 C 0.074 3.926 14 N -0.295 5.295 15 C 0.377 3.623 16 O -0.374 6.374 17 C -0.185 4.185 18 N -0.070 5.070 19 N -0.087 5.087 20 H 0.302 0.698 21 C -0.185 4.185 22 C 0.009 3.991 23 F -0.077 7.077 24 C -0.250 4.250 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.127 0.873 29 H 0.245 0.755 30 H 0.215 0.785 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 16.347 -9.671 5.827 19.868 hybrid contribution 0.818 0.167 -0.078 0.839 sum 17.165 -9.504 5.749 20.446 Atomic orbital electron populations 1.69663 1.08014 1.30153 1.36080 1.26154 0.94812 1.01716 0.90881 0.86290 0.81269 0.79548 0.78699 1.19830 1.22272 1.16327 1.19456 0.91385 0.95656 1.40984 0.89182 1.17479 0.93058 0.90350 0.88932 1.21009 0.95030 1.03811 1.06121 1.20472 0.93553 0.96783 0.97775 1.20365 0.99133 0.98094 1.07509 1.17490 0.89361 0.88156 0.97562 1.43267 1.26778 1.38676 1.20735 1.16729 0.80435 0.80026 0.85128 1.90873 1.72844 1.57071 1.16652 1.22317 0.99413 1.04618 0.92112 1.73665 1.10532 1.05626 1.17140 1.43019 1.18042 1.32754 1.14858 0.69767 1.22659 1.01416 1.06031 0.88395 1.17192 0.96191 1.02349 0.83391 1.91552 1.87180 1.93278 1.35716 1.20693 0.90218 1.05113 1.08957 0.90501 0.88316 0.88330 0.87324 0.75548 0.78453 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.95 13.93 55.55 0.77 -21.18 16 2 C 0.08 2.18 5.47 -17.34 -0.09 2.09 16 3 Si 0.91 21.09 24.37 -169.99 -4.14 16.95 16 4 H -0.27 -6.12 6.77 56.52 0.38 -5.74 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.24 -5.63 6.48 56.52 0.37 -5.27 16 7 C -0.45 -12.16 9.61 -37.74 -0.36 -12.52 16 8 H 0.09 2.56 8.06 -52.48 -0.42 2.13 16 9 C 0.11 2.71 5.19 -106.85 -0.55 2.16 16 10 C -0.24 -5.96 6.92 -38.84 -0.27 -6.23 16 11 C -0.07 -1.54 10.02 -39.69 -0.40 -1.94 16 12 C -0.23 -5.27 8.66 -39.09 -0.34 -5.61 16 13 C 0.17 3.67 6.26 -83.79 -0.52 3.15 16 14 N -0.65 -11.88 5.33 -10.84 -0.06 -11.93 16 15 C 0.59 10.90 7.56 -12.44 -0.09 10.81 16 16 O -0.50 -10.96 14.34 5.29 0.08 -10.89 16 17 C -0.02 -0.32 7.13 -82.74 -0.59 -0.91 16 18 N -0.23 -2.63 11.92 33.43 0.40 -2.23 16 19 N -0.37 -2.53 6.86 30.63 0.21 -2.32 16 20 H 0.46 1.01 8.96 -190.44 -1.71 -0.70 16 21 C -0.04 -0.29 12.06 -16.79 -0.20 -0.50 16 22 C 0.04 0.49 8.03 -39.26 -0.32 0.17 16 23 F -0.10 -1.44 17.03 2.25 0.04 -1.40 16 24 C -0.23 -5.35 9.70 -38.68 -0.38 -5.73 16 25 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 26 H 0.10 2.42 4.20 -52.49 -0.22 2.20 16 27 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 28 H 0.11 2.45 6.40 -52.49 -0.34 2.11 16 29 H 0.41 6.26 8.54 -40.82 -0.35 5.91 16 30 H 0.20 0.56 8.06 -52.49 -0.42 0.13 16 31 H 0.10 2.28 8.06 -52.48 -0.42 1.85 16 LS Contribution 279.36 15.07 4.21 4.21 Total: -1.00 -33.07 279.36 -6.10 -39.17 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -3.49 Total: 4.68 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -4.12 Total: -15.07 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 1.32 Total: -37.66 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.14 Total: 16.95 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.07 -6.10 -39.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640869310.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.854 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds