Wall clock time and date at job start Mon Mar 30 2020 20:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36769 * 127.14085 * 2 1 4 4 N 1.30303 * 107.31433 * 180.26312 * 3 2 1 5 5 N 1.28527 * 110.07888 * 359.74604 * 4 3 2 6 6 C 1.31278 * 109.85734 * 359.97438 * 5 4 3 7 7 S 1.76206 * 126.48517 * 180.02562 * 6 5 4 8 8 C 1.80997 * 99.99593 * 0.02605 * 7 6 5 9 9 C 1.50706 * 109.47131 * 179.97438 * 8 7 6 10 10 C 1.38639 * 119.74839 * 89.99892 * 9 8 7 11 11 C 1.37620 * 120.24897 * 180.23652 * 10 9 8 12 12 C 1.40715 * 119.74131 * 359.51904 * 11 10 9 13 13 C 1.41399 * 120.24183 * 180.22985 * 12 11 10 14 14 H 1.07996 * 120.00044 * 204.52621 * 13 12 11 15 15 C 1.39950 * 119.99773 * 24.53568 * 13 12 11 16 16 N 1.30821 * 119.99991 * 17.71280 * 15 13 12 17 17 Si 1.86800 * 119.99756 * 197.70913 * 15 13 12 18 18 H 1.48506 * 109.46742 * 59.99979 * 17 15 13 19 19 H 1.48505 * 109.46999 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47336 * 300.00007 * 17 15 13 21 21 C 1.40715 * 119.51261 * 0.47567 * 12 11 10 22 22 C 1.37609 * 119.74608 * 359.75586 * 21 12 11 23 23 H 1.09007 * 109.47057 * 270.17618 * 1 2 3 24 24 H 1.09005 * 109.47638 * 30.16982 * 1 2 3 25 25 H 1.08997 * 109.47685 * 150.17543 * 1 2 3 26 26 H 1.07994 * 126.34435 * 0.02562 * 3 2 1 27 27 H 1.08994 * 109.47542 * 60.00282 * 8 7 6 28 28 H 1.09001 * 109.47748 * 299.99518 * 8 7 6 29 29 H 1.08000 * 119.87572 * 359.95847 * 10 9 8 30 30 H 1.07993 * 120.12561 * 179.72165 * 11 10 9 31 31 H 0.97005 * 119.99803 * 180.02562 * 16 15 13 32 32 H 1.08000 * 120.12510 * 179.73128 * 21 12 11 33 33 H 1.08002 * 119.87647 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2907 1.0903 0.0000 4 7 3.5165 0.6483 -0.0057 5 7 3.5222 -0.6369 -0.0039 6 6 2.2894 -1.0883 0.0036 7 16 1.7927 -2.7789 0.0094 8 6 3.4143 -3.5828 0.0028 9 6 3.2333 -5.0790 0.0073 10 6 3.1443 -5.7647 -1.1944 11 6 2.9741 -7.1303 -1.2023 12 6 2.9005 -7.8317 0.0154 13 6 2.7306 -9.2355 0.0195 14 1 2.2884 -9.7233 0.8755 15 6 3.1357 -9.9926 -1.0856 16 7 3.9677 -9.4838 -1.9575 17 14 2.4883 -11.7297 -1.3155 18 1 1.0078 -11.6954 -1.4272 19 1 3.0643 -12.3127 -2.5539 20 1 2.8776 -12.5615 -0.1487 21 6 2.9921 -7.1253 1.2289 22 6 3.1573 -5.7592 1.2129 23 1 -0.3633 0.0032 1.0277 24 1 -0.3634 0.8885 -0.5165 25 1 -0.3634 -0.8915 -0.5111 26 1 1.9837 2.1256 0.0004 27 1 3.9725 -3.2822 0.8894 28 1 3.9636 -3.2857 -0.8905 29 1 3.2044 -5.2247 -2.1277 30 1 2.9006 -7.6620 -2.1394 31 1 4.2481 -10.0085 -2.7237 32 1 2.9325 -7.6531 2.1692 33 1 3.2274 -5.2148 2.1430 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342257369.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:08:22 Heat of formation + Delta-G solvation = 88.624062 kcal Electronic energy + Delta-G solvation = -17422.900963 eV Core-core repulsion = 14575.649655 eV Total energy + Delta-G solvation = -2847.251308 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.079 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.75431 -37.72277 -35.01265 -34.09769 -31.37835 -30.58413 -29.40511 -27.75767 -27.58964 -24.13350 -22.54557 -22.24323 -21.10779 -20.09794 -17.90104 -17.41727 -16.36340 -16.12568 -15.42912 -15.19218 -14.42898 -14.09287 -14.02709 -13.69710 -13.61454 -13.14441 -12.61747 -12.25239 -12.04855 -11.78108 -11.57361 -11.18181 -11.11855 -10.90435 -10.67065 -10.49930 -10.30365 -10.08574 -9.93987 -9.76413 -9.49819 -9.22147 -7.60023 -7.43311 -7.39591 -6.90041 -4.47680 1.26602 1.68654 2.32984 2.59300 2.86591 2.87812 2.98481 3.00666 3.02879 3.27024 3.83081 4.39779 4.50682 4.52571 4.82367 5.10945 5.20516 5.57499 5.58648 5.62110 5.73704 5.96441 6.24696 6.25092 6.31321 6.67406 6.85337 6.94068 7.14657 7.22844 7.48767 7.71314 7.92518 7.97299 8.15859 8.50355 8.67739 8.74863 8.83225 10.03292 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.046921 B = 0.003344 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.600152 B = 8370.334038 C = 8460.262448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.476 5.476 3 C 0.143 3.857 4 N -0.291 5.291 5 N -0.300 5.300 6 C 0.167 3.833 7 S -0.035 6.035 8 C -0.011 4.011 9 C -0.222 4.222 10 C -0.076 4.076 11 C -0.168 4.168 12 C 0.119 3.881 13 C -0.453 4.453 14 H 0.081 0.919 15 C 0.075 3.925 16 N -0.783 5.783 17 Si 0.911 3.089 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.264 1.264 21 C -0.228 4.228 22 C -0.063 4.063 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.218 0.782 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.284 0.716 32 H 0.095 0.905 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.815 12.376 1.173 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.170 5.170 3 C -0.147 4.147 4 N -0.130 5.130 5 N -0.145 5.145 6 C -0.207 4.207 7 S 0.199 5.801 8 C -0.158 4.158 9 C -0.227 4.227 10 C -0.096 4.096 11 C -0.188 4.188 12 C 0.116 3.884 13 C -0.482 4.482 14 H 0.099 0.901 15 C -0.144 4.144 16 N -0.407 5.407 17 Si 0.735 3.265 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.189 1.189 21 C -0.248 4.248 22 C -0.083 4.083 23 H 0.101 0.899 24 H 0.110 0.890 25 H 0.112 0.888 26 H 0.234 0.766 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.138 0.862 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.276 11.974 0.944 14.043 hybrid contribution -0.474 -0.003 -0.172 0.504 sum -7.750 11.971 0.772 14.282 Atomic orbital electron populations 1.22095 0.75147 1.05280 1.04257 1.46585 1.08828 1.05555 1.56072 1.26600 0.86882 0.94609 1.06618 1.73908 1.18372 1.03596 1.17155 1.74709 1.15897 1.02765 1.21120 1.27557 0.89905 0.97171 1.06057 1.86154 1.17738 0.84426 1.91803 1.22193 0.92079 0.95884 1.05671 1.18407 1.20188 0.89862 0.94275 1.20559 0.99118 0.94751 0.95155 1.21300 1.06576 0.92149 0.98791 1.17691 0.86576 0.93169 0.90994 1.19682 1.34901 0.91975 1.01654 0.90131 1.25984 0.92713 1.01018 0.94729 1.69814 1.21893 1.38658 1.10342 0.86317 0.80395 0.81195 0.78605 1.18665 1.20199 1.18855 1.20955 1.13227 0.93475 0.97155 1.20410 0.98366 0.94340 0.95230 0.89890 0.88967 0.88774 0.76554 0.89605 0.89544 0.89088 0.86241 0.90483 0.88666 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 11.09 59.84 0.66 1.21 16 2 N -0.48 -5.80 3.21 -125.58 -0.40 -6.21 16 3 C 0.14 1.70 12.80 -88.94 -1.14 0.56 16 4 N -0.29 -4.82 12.18 29.90 0.36 -4.45 16 5 N -0.30 -5.50 11.60 30.68 0.36 -5.14 16 6 C 0.17 2.68 8.07 -88.34 -0.71 1.97 16 7 S -0.03 -0.57 21.79 -107.50 -2.34 -2.91 16 8 C -0.01 -0.21 5.35 36.01 0.19 -0.02 16 9 C -0.22 -4.69 5.16 -104.32 -0.54 -5.23 16 10 C -0.08 -1.70 9.67 -39.66 -0.38 -2.09 16 11 C -0.17 -4.20 8.70 -38.87 -0.34 -4.54 16 12 C 0.12 3.05 5.57 -106.82 -0.60 2.45 16 13 C -0.45 -11.48 9.06 -37.74 -0.34 -11.83 16 14 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 15 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 16 N -0.78 -19.41 10.95 55.55 0.61 -18.80 16 17 Si 0.91 17.81 29.59 -169.99 -5.03 12.78 16 18 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 19 H -0.28 -5.29 7.11 56.52 0.40 -4.88 16 20 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 21 C -0.23 -5.37 9.80 -38.88 -0.38 -5.76 16 22 C -0.06 -1.36 9.67 -39.66 -0.38 -1.75 16 23 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 24 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 0.72 7.86 -51.93 -0.41 0.31 16 26 H 0.22 1.41 8.06 -52.49 -0.42 0.98 16 27 H 0.09 1.56 8.08 -51.92 -0.42 1.14 16 28 H 0.09 1.60 8.08 -51.92 -0.42 1.18 16 29 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 30 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 31 H 0.28 6.40 8.30 -40.82 -0.34 6.07 16 32 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 33 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 305.62 15.07 4.61 4.61 Total: -1.00 -29.69 305.62 -9.54 -39.24 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -3.66 Total: 4.19 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -4.05 Total: -23.30 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.93 Total: -34.61 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Atomic # 16 Polarization: -0.57 SS G_CDS: -2.34 Total: -2.91 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.69 -9.54 -39.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342257369.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.862 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds