Wall clock time and date at job start Mon Mar 30 2020 20:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35734 * 117.00101 * 2 1 4 4 C 1.38607 * 119.58442 * 180.30100 * 3 2 1 5 5 C 1.39787 * 118.96633 * 180.25105 * 4 3 2 6 6 C 1.47959 * 120.91050 * 179.73058 * 5 4 3 7 7 C 1.40415 * 120.79024 * 129.72152 * 6 5 4 8 8 N 1.31603 * 119.09153 * 180.02562 * 7 6 5 9 9 C 1.33620 * 120.83357 * 0.02562 * 8 7 6 10 10 C 1.41138 * 119.13495 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00046 * 6.48081 * 10 9 8 12 12 C 1.40164 * 120.00296 * 186.48549 * 10 9 8 13 13 N 1.30645 * 120.00541 * 176.14768 * 12 10 9 14 14 Si 1.86807 * 119.99863 * 355.86813 * 12 10 9 15 15 H 1.48489 * 109.47099 * 180.27739 * 14 12 10 16 16 H 1.48498 * 109.46942 * 300.28292 * 14 12 10 17 17 H 1.48503 * 109.46732 * 60.27905 * 14 12 10 18 18 N 1.33633 * 121.73411 * 0.27060 * 9 8 7 19 19 C 1.31602 * 120.82261 * 359.43742 * 18 9 8 20 20 C 1.40359 * 118.18062 * 359.46125 * 5 4 3 21 21 F 1.35096 * 120.47344 * 180.29241 * 20 5 4 22 22 C 1.38054 * 119.05194 * 0.27758 * 20 5 4 23 23 N 1.32008 * 120.94199 * 359.97438 * 22 20 5 24 24 H 1.09000 * 109.47385 * 60.00064 * 1 2 3 25 25 H 1.09001 * 109.47361 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47178 * 299.99692 * 1 2 3 27 27 H 1.07999 * 120.51535 * 0.02562 * 4 3 2 28 28 H 1.07998 * 120.44963 * 0.02562 * 7 6 5 29 29 H 0.97005 * 119.99492 * 354.86779 * 13 12 10 30 30 H 1.08004 * 120.45223 * 180.27402 * 19 18 9 31 31 H 1.08005 * 119.52803 * 180.02562 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4299 1.2719 -0.0063 5 6 4.0510 2.5241 -0.0009 6 6 5.5260 2.6409 -0.0013 7 6 6.1811 3.4704 -0.9257 8 7 7.4945 3.5488 -0.8965 9 6 8.2025 2.8516 -0.0032 10 6 9.6096 2.9622 -0.0043 11 1 10.0942 3.6808 -0.6485 12 6 10.3779 2.1394 0.8307 13 7 11.6823 2.1884 0.7754 14 14 9.5369 0.9781 2.0281 15 1 10.5641 0.2287 2.7949 16 1 8.6920 1.7605 2.9657 17 1 8.6859 0.0219 1.2752 18 7 7.6138 2.0480 0.8875 19 6 6.3041 1.9238 0.9216 20 6 3.2373 3.6677 -0.0008 21 9 3.7887 4.9010 -0.0016 22 6 1.8653 3.5143 -0.0002 23 7 1.3166 2.3136 -0.0003 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0196 0.3671 -0.0117 28 1 5.6148 4.0362 -1.6506 29 1 12.1190 2.7384 0.1062 30 1 5.8344 1.2760 1.6469 31 1 1.2318 4.3890 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241663458.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:52 Heat of formation + Delta-G solvation = -19.292323 kcal Electronic energy + Delta-G solvation = -20048.635572 eV Core-core repulsion = 16630.491482 eV Total energy + Delta-G solvation = -3418.144089 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.58066 -40.47735 -39.45864 -37.69650 -34.47024 -33.26548 -32.57077 -30.54635 -29.89700 -27.38551 -26.40700 -23.86902 -23.28208 -22.60994 -21.22903 -18.93004 -18.21263 -17.47902 -17.25265 -16.33983 -16.00451 -15.90043 -15.21370 -14.83634 -14.76354 -14.11074 -13.74531 -13.56919 -13.44652 -13.08297 -13.03836 -12.55714 -12.36445 -12.23490 -11.96427 -11.15889 -11.04583 -10.95821 -10.07375 -9.98770 -9.87737 -9.70223 -9.28907 -9.16775 -8.43173 -8.22296 -7.79173 -7.57858 -5.24607 1.01562 1.10620 2.14836 2.36735 3.04774 3.44737 3.46412 3.70879 3.84141 4.21226 4.21691 4.30188 4.38614 4.88727 5.02970 5.12963 5.20361 5.23593 5.31050 5.34456 5.36348 5.52485 5.64245 5.75468 5.87942 6.10071 6.41508 6.50688 6.72915 6.99607 7.10694 7.19589 7.73774 7.76603 7.82179 8.04374 8.40088 9.46373 9.62939 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.027429 B = 0.004916 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.584677 B = 5693.937043 C = 6434.287945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.307 6.307 3 C 0.312 3.688 4 C -0.173 4.173 5 C 0.071 3.929 6 C -0.346 4.346 7 C 0.220 3.780 8 N -0.578 5.578 9 C 0.375 3.625 10 C -0.409 4.409 11 H 0.096 0.904 12 C 0.039 3.961 13 N -0.772 5.772 14 Si 1.161 2.839 15 H -0.327 1.327 16 H -0.286 1.286 17 H -0.287 1.287 18 N -0.597 5.597 19 C 0.225 3.775 20 C 0.002 3.998 21 F -0.128 7.128 22 C 0.113 3.887 23 N -0.535 5.535 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.147 0.853 28 H 0.139 0.861 29 H 0.290 0.710 30 H 0.143 0.857 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.678 -2.095 -0.332 16.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.214 6.214 3 C 0.134 3.866 4 C -0.194 4.194 5 C 0.062 3.938 6 C -0.356 4.356 7 C 0.042 3.958 8 N -0.295 5.295 9 C 0.146 3.854 10 C -0.442 4.442 11 H 0.114 0.886 12 C -0.186 4.186 13 N -0.392 5.392 14 Si 0.995 3.005 15 H -0.261 1.261 16 H -0.214 1.214 17 H -0.215 1.215 18 N -0.319 5.319 19 C 0.051 3.949 20 C -0.021 4.021 21 F -0.107 7.107 22 C -0.043 4.043 23 N -0.259 5.259 24 H 0.076 0.924 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.165 0.835 28 H 0.156 0.844 29 H 0.102 0.898 30 H 0.160 0.840 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.812 -3.305 0.770 16.172 hybrid contribution -0.559 1.673 -1.414 2.261 sum -16.371 -1.632 -0.644 16.465 Atomic orbital electron populations 1.22821 0.77544 1.02700 1.02343 1.86257 1.22629 1.24421 1.88140 1.19674 0.89165 0.84504 0.93288 1.21129 0.91321 0.98584 1.08374 1.18798 0.93226 0.90279 0.91519 1.19211 0.90339 1.15711 1.10346 1.22754 0.90840 0.89668 0.92505 1.68748 1.06557 1.27445 1.26740 1.19922 0.94646 0.85874 0.84961 1.20800 0.88982 1.15917 1.18513 0.88621 1.28108 0.94315 0.97560 0.98647 1.70616 1.10055 1.30365 1.28145 0.81679 0.70529 0.74205 0.74044 1.26073 1.21412 1.21534 1.66984 1.10760 1.26072 1.28084 1.22572 0.89130 0.90754 0.92410 1.18752 0.92141 0.80778 1.10405 1.91493 1.85945 1.38997 1.94279 1.22217 0.90789 0.94633 0.96643 1.67215 1.40049 0.98029 1.20641 0.92427 0.88839 0.92395 0.83497 0.84404 0.89803 0.83985 0.81777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.38 101.05 1.05 1.44 16 2 O -0.31 -4.00 10.47 -18.91 -0.20 -4.20 16 3 C 0.31 4.47 7.48 -17.22 -0.13 4.34 16 4 C -0.17 -2.60 9.62 -38.87 -0.37 -2.98 16 5 C 0.07 1.19 5.54 -104.54 -0.58 0.61 16 6 C -0.35 -6.81 5.42 -104.28 -0.56 -7.37 16 7 C 0.22 4.65 10.28 -16.83 -0.17 4.47 16 8 N -0.58 -14.28 10.34 -12.40 -0.13 -14.41 16 9 C 0.37 9.73 7.24 -158.18 -1.15 8.59 16 10 C -0.41 -10.86 9.79 -37.76 -0.37 -11.23 16 11 H 0.10 2.57 8.06 -52.49 -0.42 2.15 16 12 C 0.04 1.00 5.52 -17.33 -0.10 0.90 16 13 N -0.77 -19.70 13.64 55.56 0.76 -18.94 16 14 Si 1.16 26.90 25.43 -169.99 -4.32 22.57 16 15 H -0.33 -7.45 7.11 56.52 0.40 -7.05 16 16 H -0.29 -6.63 6.96 56.52 0.39 -6.24 16 17 H -0.29 -6.61 6.90 56.52 0.39 -6.22 16 18 N -0.60 -14.55 4.46 -12.41 -0.06 -14.61 16 19 C 0.22 4.68 10.88 -16.83 -0.18 4.50 16 20 C 0.00 0.03 7.24 -38.85 -0.28 -0.25 16 21 F -0.13 -2.10 16.18 2.25 0.04 -2.07 16 22 C 0.11 1.49 11.15 -17.54 -0.20 1.29 16 23 N -0.54 -7.41 9.19 -13.37 -0.12 -7.53 16 24 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 27 H 0.15 2.08 8.06 -52.49 -0.42 1.66 16 28 H 0.14 2.55 7.92 -52.49 -0.42 2.13 16 29 H 0.29 7.04 8.72 -40.82 -0.36 6.68 16 30 H 0.14 2.47 8.06 -52.48 -0.42 2.05 16 31 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 284.44 15.07 4.29 4.29 Total: -1.00 -28.46 284.44 -5.33 -33.79 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -2.54 Total: -3.19 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -3.04 Total: 4.31 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.45 Total: -55.49 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.20 Total: -4.20 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 26.90 SS G_CDS: -4.32 Total: 22.57 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.46 -5.33 -33.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241663458.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.495 kcal (2) G-P(sol) polarization free energy of solvation -28.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds