Wall clock time and date at job start Mon Mar 30 2020 20:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35734 * 117.00101 * 2 1 4 4 C 1.38607 * 119.58442 * 180.30100 * 3 2 1 5 5 C 1.39787 * 118.96633 * 180.25105 * 4 3 2 6 6 C 1.47959 * 120.91050 * 179.73058 * 5 4 3 7 7 C 1.40415 * 120.79024 * 129.72152 * 6 5 4 8 8 N 1.31603 * 119.09153 * 180.02562 * 7 6 5 9 9 C 1.33620 * 120.83357 * 0.02562 * 8 7 6 10 10 C 1.41138 * 119.13495 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00046 * 6.48081 * 10 9 8 12 12 C 1.40164 * 120.00296 * 186.48549 * 10 9 8 13 13 N 1.30645 * 120.00541 * 176.14768 * 12 10 9 14 14 Si 1.86807 * 119.99863 * 355.86813 * 12 10 9 15 15 H 1.48489 * 109.47099 * 180.27739 * 14 12 10 16 16 H 1.48498 * 109.46942 * 300.28292 * 14 12 10 17 17 H 1.48503 * 109.46732 * 60.27905 * 14 12 10 18 18 N 1.33633 * 121.73411 * 0.27060 * 9 8 7 19 19 C 1.31602 * 120.82261 * 359.43742 * 18 9 8 20 20 C 1.40359 * 118.18062 * 359.46125 * 5 4 3 21 21 F 1.35096 * 120.47344 * 180.29241 * 20 5 4 22 22 C 1.38054 * 119.05194 * 0.27758 * 20 5 4 23 23 N 1.32008 * 120.94199 * 359.97438 * 22 20 5 24 24 H 1.09000 * 109.47385 * 60.00064 * 1 2 3 25 25 H 1.09001 * 109.47361 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47178 * 299.99692 * 1 2 3 27 27 H 1.07999 * 120.51535 * 0.02562 * 4 3 2 28 28 H 1.07998 * 120.44963 * 0.02562 * 7 6 5 29 29 H 0.97005 * 119.99492 * 354.86779 * 13 12 10 30 30 H 1.08004 * 120.45223 * 180.27402 * 19 18 9 31 31 H 1.08005 * 119.52803 * 180.02562 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4299 1.2719 -0.0063 5 6 4.0510 2.5241 -0.0009 6 6 5.5260 2.6409 -0.0013 7 6 6.1811 3.4704 -0.9257 8 7 7.4945 3.5488 -0.8965 9 6 8.2025 2.8516 -0.0032 10 6 9.6096 2.9622 -0.0043 11 1 10.0942 3.6808 -0.6485 12 6 10.3779 2.1394 0.8307 13 7 11.6823 2.1884 0.7754 14 14 9.5369 0.9781 2.0281 15 1 10.5641 0.2287 2.7949 16 1 8.6920 1.7605 2.9657 17 1 8.6859 0.0219 1.2752 18 7 7.6138 2.0480 0.8875 19 6 6.3041 1.9238 0.9216 20 6 3.2373 3.6677 -0.0008 21 9 3.7887 4.9010 -0.0016 22 6 1.8653 3.5143 -0.0002 23 7 1.3166 2.3136 -0.0003 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0196 0.3671 -0.0117 28 1 5.6148 4.0362 -1.6506 29 1 12.1190 2.7384 0.1062 30 1 5.8344 1.2760 1.6469 31 1 1.2318 4.3890 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241663458.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:51 Heat of formation + Delta-G solvation = -38.111667 kcal Electronic energy + Delta-G solvation = -20049.451640 eV Core-core repulsion = 16630.491482 eV Total energy + Delta-G solvation = -3418.960157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.081 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.83000 -41.70789 -41.12384 -38.76663 -36.23898 -34.76967 -34.38327 -31.93592 -31.21176 -28.57618 -27.76934 -25.40412 -24.77574 -23.96634 -22.75650 -20.79299 -19.33876 -18.76548 -18.47227 -17.93915 -17.62546 -17.09188 -16.40362 -16.17635 -15.88183 -15.74832 -15.40882 -15.05708 -14.85536 -14.52863 -14.23681 -14.10031 -14.03634 -13.66142 -12.89247 -12.77378 -12.62202 -12.05555 -11.89715 -11.82246 -11.38798 -11.11724 -11.02214 -10.75632 -10.02538 -9.68430 -9.45676 -9.36110 -7.16264 -0.32968 -0.03039 0.49470 0.61209 1.58985 1.64262 2.01914 2.06370 2.39389 2.45100 2.58704 3.10854 3.20581 3.42064 3.62307 3.64357 3.67744 3.81013 3.97981 4.16472 4.41716 4.50067 4.53086 4.63389 4.73892 4.82045 4.90348 5.11026 5.17833 5.24225 5.38619 5.79297 5.95915 6.17019 6.19334 6.61573 6.65069 7.62736 7.73423 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.027429 B = 0.004916 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.584677 B = 5693.937043 C = 6434.287945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.315 6.315 3 C 0.313 3.687 4 C -0.169 4.169 5 C 0.051 3.949 6 C -0.315 4.315 7 C 0.209 3.791 8 N -0.608 5.608 9 C 0.375 3.625 10 C -0.456 4.456 11 H 0.072 0.928 12 C 0.020 3.980 13 N -0.795 5.795 14 Si 1.194 2.806 15 H -0.323 1.323 16 H -0.287 1.287 17 H -0.285 1.285 18 N -0.615 5.615 19 C 0.211 3.789 20 C -0.006 4.006 21 F -0.136 7.136 22 C 0.131 3.869 23 N -0.530 5.530 24 H 0.060 0.940 25 H 0.122 0.878 26 H 0.061 0.939 27 H 0.154 0.846 28 H 0.164 0.836 29 H 0.288 0.712 30 H 0.180 0.820 31 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.684 -2.910 0.089 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.222 6.222 3 C 0.135 3.865 4 C -0.190 4.190 5 C 0.042 3.958 6 C -0.324 4.324 7 C 0.035 3.965 8 N -0.326 5.326 9 C 0.142 3.858 10 C -0.491 4.491 11 H 0.091 0.909 12 C -0.201 4.201 13 N -0.417 5.417 14 Si 1.025 2.975 15 H -0.256 1.256 16 H -0.215 1.215 17 H -0.214 1.214 18 N -0.338 5.338 19 C 0.040 3.960 20 C -0.028 4.028 21 F -0.115 7.115 22 C -0.025 4.025 23 N -0.253 5.253 24 H 0.078 0.922 25 H 0.140 0.860 26 H 0.079 0.921 27 H 0.172 0.828 28 H 0.181 0.819 29 H 0.099 0.901 30 H 0.197 0.803 31 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -19.903 -4.129 1.178 20.361 hybrid contribution 0.167 1.926 -1.621 2.523 sum -19.736 -2.203 -0.443 19.863 Atomic orbital electron populations 1.23123 0.75444 1.04817 1.02590 1.86260 1.24677 1.23643 1.87644 1.19748 0.89064 0.85177 0.92531 1.21134 0.92001 0.98122 1.07727 1.18638 0.91413 0.91693 0.94104 1.19497 0.92258 1.12712 1.07968 1.23260 0.90008 0.90008 0.93249 1.68740 1.08275 1.28393 1.27195 1.19976 0.94672 0.85943 0.85175 1.20670 0.89841 1.17810 1.20750 0.90936 1.28783 0.94430 0.97872 0.99045 1.70625 1.10229 1.31671 1.29127 0.81274 0.69999 0.73217 0.72976 1.25574 1.21496 1.21352 1.66988 1.12498 1.26316 1.27963 1.23256 0.88252 0.91233 0.93222 1.18879 0.92956 0.79996 1.10983 1.91483 1.86193 1.39432 1.94420 1.22725 0.90131 0.95473 0.94216 1.67356 1.39870 0.98138 1.19981 0.92157 0.85980 0.92070 0.82787 0.81880 0.90058 0.80336 0.78216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.38 113.37 1.18 1.69 16 2 O -0.32 -7.03 10.47 -90.57 -0.95 -7.98 16 3 C 0.31 7.79 7.48 84.71 0.63 8.42 16 4 C -0.17 -4.51 9.62 22.73 0.22 -4.29 16 5 C 0.05 1.54 5.54 -19.81 -0.11 1.43 16 6 C -0.32 -11.77 5.42 -19.64 -0.11 -11.87 16 7 C 0.21 8.61 10.28 85.26 0.88 9.48 16 8 N -0.61 -30.39 10.34 -193.16 -2.00 -32.38 16 9 C 0.38 19.86 7.24 134.93 0.98 20.84 16 10 C -0.46 -25.41 9.79 23.45 0.23 -25.18 16 11 H 0.07 4.20 8.06 -2.91 -0.02 4.18 16 12 C 0.02 1.05 5.52 85.34 0.47 1.52 16 13 N -0.80 -42.24 13.64 21.86 0.30 -41.95 16 14 Si 1.19 54.98 25.43 68.60 1.74 56.73 16 15 H -0.32 -14.39 7.11 99.48 0.71 -13.68 16 16 H -0.29 -13.07 6.96 99.48 0.69 -12.38 16 17 H -0.29 -12.87 6.90 99.48 0.69 -12.19 16 18 N -0.61 -29.69 4.46 -193.16 -0.86 -30.55 16 19 C 0.21 8.38 10.88 85.26 0.93 9.31 16 20 C -0.01 -0.16 7.24 22.74 0.16 0.00 16 21 F -0.14 -4.10 16.18 44.97 0.73 -3.37 16 22 C 0.13 2.87 11.15 84.62 0.94 3.81 16 23 N -0.53 -12.39 9.19 -309.03 -2.84 -15.22 16 24 H 0.06 0.88 8.10 -2.39 -0.02 0.86 16 25 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 0.88 8.10 -2.39 -0.02 0.86 16 27 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16 28 H 0.16 5.75 7.92 -2.91 -0.02 5.72 16 29 H 0.29 14.80 8.72 -92.70 -0.81 13.99 16 30 H 0.18 5.66 8.06 -2.91 -0.02 5.63 16 31 H 0.20 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -62.36 284.44 3.63 -58.73 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: 1.10 Total: 0.84 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 6.40 Total: 15.16 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -5.40 Total: -120.10 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.95 Total: -7.98 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.73 Total: -3.37 kcal Atomic # 14 Polarization: 54.98 SS G_CDS: 1.74 Total: 56.73 kcal Total: -62.36 3.63 -58.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241663458.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.617 kcal (2) G-P(sol) polarization free energy of solvation -62.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds