Wall clock time and date at job start Mon Mar 30 2020 20:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42103 * 108.58166 * 2 1 4 4 O 1.42102 * 108.57936 * 228.97010 * 2 1 3 5 5 C 1.81406 * 101.92258 * 114.48499 * 2 1 3 6 6 H 1.09007 * 108.44346 * 67.31065 * 5 2 1 7 7 C 1.52564 * 108.51273 * 184.99872 * 5 2 1 8 8 C 1.50885 * 109.36180 * 206.26474 * 7 5 2 9 9 C 1.53947 * 110.09517 * 268.12110 * 8 7 5 10 10 N 1.47604 * 112.14437 * 40.55899 * 9 8 7 11 11 C 1.34778 * 118.64492 * 222.13155 * 10 9 8 12 12 O 1.21691 * 119.99832 * 354.79630 * 11 10 9 13 13 C 1.46373 * 120.00087 * 174.78684 * 11 10 9 14 14 H 1.08004 * 120.00075 * 5.00568 * 13 11 10 15 15 C 1.40043 * 120.00129 * 185.00038 * 13 11 10 16 16 N 1.30674 * 120.00028 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00168 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47038 * 89.99982 * 17 15 13 19 19 H 1.48499 * 109.47385 * 210.00083 * 17 15 13 20 20 H 1.48498 * 109.47024 * 330.00156 * 17 15 13 21 21 C 1.44579 * 122.71400 * 42.15498 * 10 9 8 22 22 C 1.47091 * 108.51288 * 309.76885 * 5 2 1 23 23 H 1.08996 * 109.46675 * 65.51255 * 1 2 3 24 24 H 1.08996 * 109.47166 * 185.51118 * 1 2 3 25 25 H 1.09001 * 109.47190 * 305.51317 * 1 2 3 26 26 H 1.08998 * 109.49257 * 326.22585 * 7 5 2 27 27 H 1.08997 * 109.48803 * 86.30059 * 7 5 2 28 28 H 1.09004 * 109.36456 * 28.30901 * 8 7 5 29 29 H 1.08996 * 109.36888 * 147.92316 * 8 7 5 30 30 H 1.08997 * 108.95102 * 161.24816 * 9 8 7 31 31 H 1.08999 * 108.94617 * 279.96247 * 9 8 7 32 32 H 0.96999 * 119.99935 * 180.02562 * 16 15 13 33 33 H 1.09006 * 109.44739 * 29.29112 * 21 10 9 34 34 H 1.08993 * 109.45192 * 149.23338 * 21 10 9 35 35 H 1.09000 * 109.32367 * 296.20377 * 22 5 2 36 36 H 1.08996 * 109.32886 * 55.67665 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1888 -0.7356 1.6153 6 1 1.8697 -1.7779 1.6020 7 6 3.6989 -0.6939 1.8279 8 6 4.1028 -1.8043 2.7664 9 6 4.1065 -1.2941 4.2188 10 7 2.9605 -0.4074 4.5001 11 6 3.1697 0.7081 5.2270 12 8 4.2636 0.9190 5.7166 13 6 2.0812 1.6660 5.4273 14 1 1.0899 1.4411 5.0621 15 6 2.3250 2.8739 6.0925 16 7 3.5244 3.1462 6.5340 17 14 0.9357 4.0961 6.3488 18 1 0.2565 3.8101 7.6380 19 1 1.4875 5.4745 6.3751 20 1 -0.0413 3.9751 5.2370 21 6 1.6226 -0.6865 4.0284 22 6 1.4122 -0.0257 2.6433 23 1 -0.3632 0.4260 -0.9352 24 1 -0.3633 -1.0229 0.0987 25 1 -0.3634 0.5970 0.8365 26 1 4.2047 -0.8246 0.8713 27 1 3.9790 0.2669 2.2596 28 1 3.3966 -2.6295 2.6750 29 1 5.1010 -2.1545 2.5037 30 1 4.0670 -2.1486 4.8943 31 1 5.0303 -0.7440 4.3983 32 1 3.6932 3.9827 6.9951 33 1 1.4860 -1.7644 3.9409 34 1 0.8972 -0.2850 4.7359 35 1 1.7367 1.0140 2.6864 36 1 0.3541 -0.0603 2.3841 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138980708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:04:59 Heat of formation + Delta-G solvation = -105.166363 kcal Electronic energy + Delta-G solvation = -20678.010659 eV Core-core repulsion = 17482.754297 eV Total energy + Delta-G solvation = -3195.256362 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.00112 -36.90196 -36.22950 -35.91297 -33.03339 -32.69583 -32.20990 -29.57642 -26.85736 -25.97723 -24.76422 -21.58753 -20.68700 -18.93179 -18.58422 -17.06130 -16.75124 -16.05807 -15.77441 -15.50007 -15.13448 -14.49614 -14.27502 -13.85821 -13.53159 -13.36380 -13.22232 -12.74292 -12.26610 -12.18417 -12.07780 -11.96537 -11.88103 -11.41331 -11.20757 -11.13940 -11.03432 -10.91172 -10.66546 -10.63616 -10.38707 -10.22798 -10.13781 -9.76501 -8.88040 -7.61608 -7.28273 -6.22628 -4.68010 0.04456 2.76073 3.11440 3.18683 3.21261 3.67468 4.03461 4.05068 4.42991 4.51395 4.53781 4.72152 4.74596 4.98574 5.13509 5.34910 5.40195 5.51780 5.61581 5.69113 5.80240 5.84673 5.97853 6.03666 6.13143 6.28304 6.40124 6.51137 6.62742 6.65697 7.40869 7.67129 8.09390 8.28320 8.99029 9.38252 10.53955 10.72406 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.019824 B = 0.006917 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.056478 B = 4047.146005 C = 4897.739805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.661 4.661 2 S 2.403 3.597 3 O -0.934 6.934 4 O -0.952 6.952 5 C -0.536 4.536 6 H 0.128 0.872 7 C -0.097 4.097 8 C -0.121 4.121 9 C 0.120 3.880 10 N -0.639 5.639 11 C 0.553 3.447 12 O -0.577 6.577 13 C -0.544 4.544 14 H 0.073 0.927 15 C 0.088 3.912 16 N -0.766 5.766 17 Si 0.904 3.096 18 H -0.273 1.273 19 H -0.279 1.279 20 H -0.264 1.264 21 C 0.149 3.851 22 C -0.150 4.150 23 H 0.124 0.876 24 H 0.126 0.874 25 H 0.135 0.865 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.269 0.731 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.725 -8.336 -9.820 15.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.587 3.413 3 O -0.931 6.931 4 O -0.949 6.949 5 C -0.647 4.647 6 H 0.146 0.854 7 C -0.136 4.136 8 C -0.160 4.160 9 C -0.003 4.003 10 N -0.376 5.376 11 C 0.359 3.641 12 O -0.459 6.459 13 C -0.580 4.580 14 H 0.092 0.908 15 C -0.132 4.132 16 N -0.394 5.394 17 Si 0.728 3.272 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.188 1.188 21 C 0.022 3.978 22 C -0.190 4.190 23 H 0.143 0.857 24 H 0.145 0.855 25 H 0.153 0.847 26 H 0.082 0.918 27 H 0.113 0.887 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.418 -7.797 -10.160 14.325 hybrid contribution -1.437 0.237 0.549 1.557 sum -7.855 -7.559 -9.611 14.533 Atomic orbital electron populations 1.30335 1.27501 1.11408 1.11692 1.08583 0.78314 0.76218 0.78148 1.93606 1.78615 1.34343 1.86540 1.93558 1.79263 1.67220 1.54845 1.28792 1.05406 1.11684 1.18791 0.85357 1.20826 0.89510 1.03050 1.00163 1.21692 1.01447 0.97075 0.95828 1.21388 0.92436 0.93628 0.92896 1.47756 1.06053 1.26111 1.57704 1.18337 0.89260 0.79183 0.77371 1.90595 1.27157 1.75950 1.52217 1.21007 0.95750 1.01933 1.39320 0.90848 1.25733 0.95715 0.98323 0.93477 1.70007 1.20560 1.21962 1.26908 0.86433 0.81642 0.79821 0.79264 1.19795 1.20439 1.18802 1.20968 0.86770 0.97365 0.92686 1.21436 0.97812 1.02685 0.97039 0.85696 0.85513 0.84674 0.91769 0.88743 0.92059 0.91033 0.94223 0.90009 0.92061 0.93039 0.89652 0.88375 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -5.40 9.77 101.05 0.99 -4.41 16 2 S 2.40 30.00 4.64 -107.50 -0.50 29.50 16 3 O -0.93 -15.86 18.06 -57.83 -1.04 -16.91 16 4 O -0.95 -14.24 18.08 -57.83 -1.05 -15.29 16 5 C -0.54 -6.71 2.12 -29.79 -0.06 -6.77 16 6 H 0.13 1.18 7.35 -51.84 -0.38 0.80 16 7 C -0.10 -1.45 4.91 -28.02 -0.14 -1.59 16 8 C -0.12 -1.70 5.71 -27.30 -0.16 -1.86 16 9 C 0.12 2.21 6.07 -2.94 -0.02 2.19 16 10 N -0.64 -13.37 2.24 -174.18 -0.39 -13.76 16 11 C 0.55 14.94 7.54 -12.99 -0.10 14.84 16 12 O -0.58 -18.11 14.35 5.20 0.07 -18.04 16 13 C -0.54 -14.41 8.36 -35.63 -0.30 -14.71 16 14 H 0.07 1.73 5.95 -52.48 -0.31 1.41 16 15 C 0.09 2.37 5.50 -17.37 -0.10 2.27 16 16 N -0.77 -22.49 11.84 55.55 0.66 -21.83 16 17 Si 0.90 19.53 29.56 -169.99 -5.02 14.51 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 21 C 0.15 2.44 5.02 -4.07 -0.02 2.42 16 22 C -0.15 -2.09 4.60 -28.56 -0.13 -2.22 16 23 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.13 1.00 6.59 -51.92 -0.34 0.65 16 26 H 0.06 0.86 7.79 -51.93 -0.40 0.46 16 27 H 0.09 1.74 7.48 -51.93 -0.39 1.35 16 28 H 0.06 0.73 7.32 -51.93 -0.38 0.35 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.73 7.01 -51.93 -0.36 1.37 16 32 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 33 H 0.05 0.69 8.06 -51.93 -0.42 0.27 16 34 H 0.09 1.45 6.13 -51.93 -0.32 1.14 16 35 H 0.10 1.69 7.88 -51.93 -0.41 1.28 16 36 H 0.07 0.71 5.78 -51.93 -0.30 0.41 16 LS Contribution 297.90 15.07 4.49 4.49 Total: -1.00 -37.66 297.90 -7.66 -45.32 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.84 Total: 1.85 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -0.03 Total: -9.83 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.27 Total: -35.59 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -2.02 Total: -50.24 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Atomic # 16 Polarization: 30.00 SS G_CDS: -0.50 Total: 29.50 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -37.66 -7.66 -45.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138980708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.850 kcal (2) G-P(sol) polarization free energy of solvation -37.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds