Wall clock time and date at job start Mon Mar 30 2020 20:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42103 * 108.58166 * 2 1 4 4 O 1.42102 * 108.57936 * 228.97010 * 2 1 3 5 5 C 1.81406 * 101.92258 * 114.48499 * 2 1 3 6 6 H 1.09007 * 108.44346 * 67.31065 * 5 2 1 7 7 C 1.52564 * 108.51273 * 184.99872 * 5 2 1 8 8 C 1.50885 * 109.36180 * 206.26474 * 7 5 2 9 9 C 1.53947 * 110.09517 * 268.12110 * 8 7 5 10 10 N 1.47604 * 112.14437 * 40.55899 * 9 8 7 11 11 C 1.34778 * 118.64492 * 222.13155 * 10 9 8 12 12 O 1.21691 * 119.99832 * 354.79630 * 11 10 9 13 13 C 1.46373 * 120.00087 * 174.78684 * 11 10 9 14 14 H 1.08004 * 120.00075 * 5.00568 * 13 11 10 15 15 C 1.40043 * 120.00129 * 185.00038 * 13 11 10 16 16 N 1.30674 * 120.00028 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00168 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47038 * 89.99982 * 17 15 13 19 19 H 1.48499 * 109.47385 * 210.00083 * 17 15 13 20 20 H 1.48498 * 109.47024 * 330.00156 * 17 15 13 21 21 C 1.44579 * 122.71400 * 42.15498 * 10 9 8 22 22 C 1.47091 * 108.51288 * 309.76885 * 5 2 1 23 23 H 1.08996 * 109.46675 * 65.51255 * 1 2 3 24 24 H 1.08996 * 109.47166 * 185.51118 * 1 2 3 25 25 H 1.09001 * 109.47190 * 305.51317 * 1 2 3 26 26 H 1.08998 * 109.49257 * 326.22585 * 7 5 2 27 27 H 1.08997 * 109.48803 * 86.30059 * 7 5 2 28 28 H 1.09004 * 109.36456 * 28.30901 * 8 7 5 29 29 H 1.08996 * 109.36888 * 147.92316 * 8 7 5 30 30 H 1.08997 * 108.95102 * 161.24816 * 9 8 7 31 31 H 1.08999 * 108.94617 * 279.96247 * 9 8 7 32 32 H 0.96999 * 119.99935 * 180.02562 * 16 15 13 33 33 H 1.09006 * 109.44739 * 29.29112 * 21 10 9 34 34 H 1.08993 * 109.45192 * 149.23338 * 21 10 9 35 35 H 1.09000 * 109.32367 * 296.20377 * 22 5 2 36 36 H 1.08996 * 109.32886 * 55.67665 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1888 -0.7356 1.6153 6 1 1.8697 -1.7779 1.6020 7 6 3.6989 -0.6939 1.8279 8 6 4.1028 -1.8043 2.7664 9 6 4.1065 -1.2941 4.2188 10 7 2.9605 -0.4074 4.5001 11 6 3.1697 0.7081 5.2270 12 8 4.2636 0.9190 5.7166 13 6 2.0812 1.6660 5.4273 14 1 1.0899 1.4411 5.0621 15 6 2.3250 2.8739 6.0925 16 7 3.5244 3.1462 6.5340 17 14 0.9357 4.0961 6.3488 18 1 0.2565 3.8101 7.6380 19 1 1.4875 5.4745 6.3751 20 1 -0.0413 3.9751 5.2370 21 6 1.6226 -0.6865 4.0284 22 6 1.4122 -0.0257 2.6433 23 1 -0.3632 0.4260 -0.9352 24 1 -0.3633 -1.0229 0.0987 25 1 -0.3634 0.5970 0.8365 26 1 4.2047 -0.8246 0.8713 27 1 3.9790 0.2669 2.2596 28 1 3.3966 -2.6295 2.6750 29 1 5.1010 -2.1545 2.5037 30 1 4.0670 -2.1486 4.8943 31 1 5.0303 -0.7440 4.3983 32 1 3.6932 3.9827 6.9951 33 1 1.4860 -1.7644 3.9409 34 1 0.8972 -0.2850 4.7359 35 1 1.7367 1.0140 2.6864 36 1 0.3541 -0.0603 2.3841 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138980708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:04:59 Heat of formation + Delta-G solvation = -135.621609 kcal Electronic energy + Delta-G solvation = -20679.331297 eV Core-core repulsion = 17482.754297 eV Total energy + Delta-G solvation = -3196.577001 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.50525 -38.05931 -37.87358 -37.00874 -34.80097 -34.32604 -33.71103 -30.32852 -28.68388 -27.43213 -26.16614 -23.12450 -21.90910 -20.47812 -19.68929 -18.47512 -18.20422 -17.50443 -17.02013 -16.74576 -16.49841 -16.06762 -15.83157 -15.14453 -14.87114 -14.48774 -14.04907 -13.90571 -13.75658 -13.57390 -13.44107 -13.10701 -13.01868 -12.95988 -12.85358 -12.66971 -12.59102 -12.14214 -12.00618 -11.96112 -11.82828 -11.68420 -11.56725 -10.89704 -10.87338 -9.71783 -8.99716 -8.24810 -6.77556 -0.87968 1.40899 1.42680 1.56991 1.87607 2.25586 2.50336 2.76201 2.92530 3.12170 3.50395 3.66595 3.70586 4.01366 4.12626 4.16832 4.22698 4.32460 4.46173 4.63859 4.66566 4.72148 4.81302 4.88589 4.99612 5.06832 5.08975 5.21563 5.30906 5.36850 5.46461 5.88791 6.25621 6.48731 6.92938 7.51628 8.53297 8.72784 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.019824 B = 0.006917 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.056478 B = 4047.146005 C = 4897.739805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.636 4.636 2 S 2.400 3.600 3 O -0.995 6.995 4 O -0.982 6.982 5 C -0.537 4.537 6 H 0.178 0.822 7 C -0.105 4.105 8 C -0.110 4.110 9 C 0.117 3.883 10 N -0.637 5.637 11 C 0.533 3.467 12 O -0.639 6.639 13 C -0.561 4.561 14 H 0.102 0.898 15 C 0.025 3.975 16 N -0.827 5.827 17 Si 0.988 3.012 18 H -0.261 1.261 19 H -0.282 1.282 20 H -0.240 1.240 21 C 0.136 3.864 22 C -0.148 4.148 23 H 0.141 0.859 24 H 0.167 0.833 25 H 0.150 0.850 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.270 0.730 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.962 -10.282 -11.317 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.789 4.789 2 S 2.590 3.410 3 O -0.993 6.993 4 O -0.979 6.979 5 C -0.647 4.647 6 H 0.195 0.805 7 C -0.144 4.144 8 C -0.148 4.148 9 C -0.006 4.006 10 N -0.372 5.372 11 C 0.339 3.661 12 O -0.526 6.526 13 C -0.597 4.597 14 H 0.120 0.880 15 C -0.190 4.190 16 N -0.457 5.457 17 Si 0.808 3.192 18 H -0.186 1.186 19 H -0.207 1.207 20 H -0.163 1.163 21 C 0.010 3.990 22 C -0.187 4.187 23 H 0.159 0.841 24 H 0.186 0.814 25 H 0.169 0.831 26 H 0.092 0.908 27 H 0.062 0.938 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.645 -9.798 -11.703 18.609 hybrid contribution -0.138 0.735 0.979 1.232 sum -10.783 -9.063 -10.724 17.703 Atomic orbital electron populations 1.30116 1.20660 1.14687 1.13411 1.08284 0.80885 0.74420 0.77419 1.93539 1.81407 1.37192 1.87113 1.93518 1.81462 1.67301 1.55592 1.28769 1.03206 1.14507 1.18251 0.80450 1.20819 0.92234 1.00794 1.00504 1.21664 1.03730 0.97495 0.91953 1.21507 0.89802 0.92821 0.96513 1.47588 1.08634 1.24605 1.56406 1.18801 0.88653 0.80979 0.77628 1.90541 1.29292 1.77904 1.54908 1.21570 0.96895 1.02118 1.39141 0.87978 1.27023 0.98612 1.00769 0.92557 1.70217 1.23832 1.22952 1.28737 0.85154 0.77825 0.76057 0.80183 1.18572 1.20715 1.16258 1.21346 0.83658 1.00305 0.93645 1.21418 1.01239 1.00027 0.96024 0.84091 0.81445 0.83124 0.90753 0.93792 0.88059 0.89473 0.92855 0.94591 0.91983 0.88639 0.90442 0.92661 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -6.65 9.77 113.37 1.11 -5.54 16 2 S 2.40 54.32 4.64 -56.49 -0.26 54.06 16 3 O -1.00 -34.25 18.06 -127.37 -2.30 -36.55 16 4 O -0.98 -27.25 18.08 -127.37 -2.30 -29.56 16 5 C -0.54 -11.73 2.12 28.61 0.06 -11.67 16 6 H 0.18 2.12 7.35 -2.44 -0.02 2.10 16 7 C -0.10 -3.09 4.91 29.76 0.15 -2.94 16 8 C -0.11 -2.88 5.71 30.23 0.17 -2.71 16 9 C 0.12 4.37 6.07 86.49 0.53 4.90 16 10 N -0.64 -26.96 2.24 -823.19 -1.84 -28.80 16 11 C 0.53 30.27 7.54 86.36 0.65 30.92 16 12 O -0.64 -43.17 14.35 -4.32 -0.06 -43.23 16 13 C -0.56 -30.39 8.36 24.83 0.21 -30.18 16 14 H 0.10 4.72 5.95 -2.91 -0.02 4.70 16 15 C 0.02 1.37 5.50 85.30 0.47 1.84 16 16 N -0.83 -51.29 11.84 21.83 0.26 -51.03 16 17 Si 0.99 40.28 29.56 68.60 2.03 42.31 16 18 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 19 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.24 -8.74 7.11 99.48 0.71 -8.04 16 21 C 0.14 4.05 5.02 87.39 0.44 4.49 16 22 C -0.15 -3.66 4.60 29.41 0.14 -3.52 16 23 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.17 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.15 1.25 6.59 -2.39 -0.02 1.24 16 26 H 0.07 1.99 7.79 -2.39 -0.02 1.97 16 27 H 0.04 1.73 7.48 -2.39 -0.02 1.71 16 28 H 0.10 1.90 7.32 -2.38 -0.02 1.88 16 29 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.65 7.01 -2.39 -0.02 1.63 16 32 H 0.27 15.34 8.29 -92.71 -0.77 14.57 16 33 H 0.10 2.04 8.06 -2.38 -0.02 2.02 16 34 H 0.08 2.43 6.13 -2.39 -0.01 2.42 16 35 H 0.05 1.88 7.88 -2.39 -0.02 1.86 16 36 H 0.13 1.72 5.78 -2.39 -0.01 1.71 16 Total: -1.00 -92.56 297.90 0.52 -92.05 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 1.09 Total: 15.18 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 3.91 Total: -14.43 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -1.58 Total: -79.83 kcal Atomic # 8 Polarization: -104.67 SS G_CDS: -4.67 Total: -109.33 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Atomic # 16 Polarization: 54.32 SS G_CDS: -0.26 Total: 54.06 kcal Total: -92.56 0.52 -92.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138980708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.576 kcal (2) G-P(sol) polarization free energy of solvation -92.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds