Wall clock time and date at job start Mon Mar 30 2020 20:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47457 * 2 1 4 4 O 1.20761 * 119.99568 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00257 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.46991 * 180.02562 * 5 3 2 7 7 S 1.65602 * 119.99699 * 165.27809 * 6 5 3 8 8 O 1.42108 * 104.27382 * 180.79762 * 7 6 5 9 9 O 1.42093 * 104.27799 * 308.65309 * 7 6 5 10 10 C 1.81394 * 104.45036 * 64.72636 * 7 6 5 11 11 C 1.52998 * 109.47299 * 173.87111 * 10 7 6 12 12 C 1.50699 * 115.54907 * 65.26885 * 11 10 7 13 13 H 1.07999 * 120.00357 * 268.54409 * 12 11 10 14 14 C 1.37880 * 119.99986 * 88.55068 * 12 11 10 15 15 N 1.31511 * 120.00224 * 174.70141 * 14 12 11 16 16 Si 1.86801 * 120.00053 * 354.69864 * 14 12 11 17 17 H 1.48499 * 109.47053 * 92.55135 * 16 14 12 18 18 H 1.48496 * 109.47263 * 212.55623 * 16 14 12 19 19 H 1.48498 * 109.46965 * 332.55652 * 16 14 12 20 20 C 1.53004 * 117.50138 * 279.60087 * 11 10 7 21 21 C 1.53000 * 117.50175 * 210.93986 * 11 10 7 22 22 H 1.08998 * 109.47042 * 299.99708 * 1 2 3 23 23 H 1.08995 * 109.47072 * 60.00092 * 1 2 3 24 24 H 1.09000 * 109.46834 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47432 * 239.99621 * 2 1 3 26 26 H 1.09008 * 109.47227 * 120.00147 * 2 1 3 27 27 H 1.09001 * 109.46563 * 60.00414 * 5 3 2 28 28 H 1.08992 * 109.47099 * 300.00311 * 5 3 2 29 29 H 0.97002 * 120.00318 * 345.00447 * 6 5 3 30 30 H 1.08996 * 109.47300 * 293.87248 * 10 7 6 31 31 H 1.08999 * 109.47414 * 53.87300 * 10 7 6 32 32 H 0.96997 * 120.00232 * 180.02562 * 15 14 12 33 33 H 1.09003 * 117.49542 * 0.02562 * 20 11 10 34 34 H 1.09000 * 117.49964 * 145.01302 * 20 11 10 35 35 H 1.08997 * 117.50053 * 214.97519 * 21 11 10 36 36 H 1.08998 * 117.49690 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2476 2.3387 0.0005 5 6 3.5140 1.6961 0.0006 6 7 3.7417 3.1433 0.0011 7 16 5.2405 3.7455 0.3662 8 8 5.0805 5.1553 0.2873 9 8 5.5824 3.1146 1.5927 10 6 6.3067 3.1498 -0.9749 11 6 7.6985 3.7692 -0.8335 12 6 8.4704 3.3598 0.3943 13 1 8.3973 3.9457 1.2986 14 6 9.2702 2.2370 0.3633 15 7 10.0239 1.9377 1.3985 16 14 9.2831 1.1410 -1.1494 17 1 10.3716 1.5715 -2.0632 18 1 9.5100 -0.2677 -0.7381 19 1 7.9778 1.2482 -1.8494 20 6 7.8911 5.1983 -1.3450 21 6 8.4934 4.0212 -2.1162 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 3.9654 1.2572 -0.8892 28 1 3.9647 1.2575 0.8907 29 1 3.0156 3.7486 -0.2163 30 1 6.3852 2.0639 -0.9217 31 1 5.8774 3.4363 -1.9350 32 1 10.5868 1.1481 1.3765 33 1 7.0261 5.6973 -1.7820 34 1 8.5764 5.8422 -0.7936 35 1 9.5747 3.8912 -2.0720 36 1 8.0250 3.7452 -3.0610 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663291502.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:04:46 Heat of formation + Delta-G solvation = -87.249232 kcal Electronic energy + Delta-G solvation = -19887.464193 eV Core-core repulsion = 16692.984776 eV Total energy + Delta-G solvation = -3194.479417 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.86298 -37.16661 -36.40206 -35.24423 -34.62986 -33.14858 -32.19976 -28.56632 -28.00127 -25.56540 -23.86053 -21.74720 -20.07292 -19.55570 -18.73064 -17.41032 -16.83368 -16.33171 -16.09992 -15.65491 -15.27583 -15.13941 -14.56387 -14.10548 -13.87433 -13.64472 -13.03143 -12.81961 -12.71499 -12.63130 -12.36410 -12.01166 -11.59840 -11.45531 -11.45079 -11.27760 -11.23573 -10.97715 -10.69226 -10.40917 -10.17462 -9.90618 -9.79421 -9.42096 -9.19404 -8.70230 -8.50087 -6.20236 -4.27936 0.86262 1.71429 3.17997 3.22623 3.27873 3.29944 3.73088 4.30723 4.37977 4.62277 4.74918 4.79960 4.82685 4.89983 5.02530 5.13758 5.18791 5.31362 5.41503 5.53239 5.63925 5.65684 5.81561 5.90395 5.93359 6.00667 6.14584 6.40177 6.62201 6.83975 7.03680 7.12274 7.26737 7.55992 8.33635 8.85581 9.40550 10.91221 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.021506 B = 0.005921 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.642660 B = 4727.835200 C = 5265.201757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.175 4.175 3 C 0.355 3.645 4 O -0.446 6.446 5 C 0.061 3.939 6 N -1.128 6.128 7 S 2.615 3.385 8 O -0.963 6.963 9 O -0.939 6.939 10 C -0.577 4.577 11 C 0.000 4.000 12 C -0.510 4.510 13 H 0.087 0.913 14 C 0.088 3.912 15 N -0.882 5.882 16 Si 0.874 3.126 17 H -0.275 1.275 18 H -0.290 1.290 19 H -0.257 1.257 20 C -0.177 4.177 21 C -0.184 4.184 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.118 0.882 29 H 0.417 0.583 30 H 0.126 0.874 31 H 0.108 0.892 32 H 0.267 0.733 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.191 -5.419 -7.053 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.213 4.213 3 C 0.228 3.772 4 O -0.318 6.318 5 C -0.066 4.066 6 N -0.887 5.887 7 S 2.711 3.289 8 O -0.954 6.954 9 O -0.928 6.928 10 C -0.709 4.709 11 C -0.003 4.003 12 C -0.546 4.546 13 H 0.105 0.895 14 C -0.116 4.116 15 N -0.517 5.517 16 Si 0.702 3.298 17 H -0.201 1.201 18 H -0.217 1.217 19 H -0.181 1.181 20 C -0.214 4.214 21 C -0.223 4.223 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.136 0.864 29 H 0.253 0.747 30 H 0.144 0.856 31 H 0.127 0.873 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.150 -4.661 -6.127 16.109 hybrid contribution 0.048 -0.995 -1.571 1.860 sum -14.101 -5.656 -7.699 17.032 Atomic orbital electron populations 1.21594 0.93662 1.01867 1.03090 1.22064 0.98439 0.95507 1.05294 1.24744 0.90592 0.91419 0.70412 1.90377 1.58407 1.47781 1.35271 1.21697 0.96803 0.83141 1.05001 1.55913 1.30609 1.12707 1.89479 1.04988 0.72766 0.74259 0.76929 1.93531 1.84770 1.29347 1.87748 1.93578 1.82198 1.77107 1.39949 1.30313 1.11852 1.11949 1.16797 1.18857 0.90052 0.95472 0.95877 1.20348 1.26620 1.11914 0.95761 0.89495 1.24956 0.93980 0.96801 0.95899 1.69894 1.25184 1.26445 1.30183 0.86921 0.79651 0.79653 0.83603 1.20123 1.21675 1.18143 1.23032 1.02683 0.91477 1.04202 1.22987 0.99983 1.04489 0.94868 0.92065 0.92186 0.91961 0.87981 0.87774 0.88396 0.86450 0.74716 0.85576 0.87343 0.92263 0.89964 0.88587 0.88892 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.20 37.16 0.34 -0.74 16 2 C -0.18 -1.23 6.36 -27.88 -0.18 -1.41 16 3 C 0.35 3.74 7.23 -29.04 -0.21 3.53 16 4 O -0.45 -6.08 15.35 6.00 0.09 -5.99 16 5 C 0.06 0.70 6.54 -5.20 -0.03 0.66 16 6 N -1.13 -16.40 5.82 -11.66 -0.07 -16.47 16 7 S 2.62 50.24 5.19 -107.50 -0.56 49.69 16 8 O -0.96 -20.65 18.08 -57.54 -1.04 -21.69 16 9 O -0.94 -21.63 17.18 -57.54 -0.99 -22.62 16 10 C -0.58 -10.75 5.54 37.16 0.21 -10.54 16 11 C 0.00 0.00 0.79 -155.66 -0.12 -0.12 16 12 C -0.51 -13.93 8.77 -34.44 -0.30 -14.24 16 13 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 14 C 0.09 2.45 5.47 -17.82 -0.10 2.36 16 15 N -0.88 -26.19 13.96 55.43 0.77 -25.41 16 16 Si 0.87 20.25 24.96 -169.99 -4.24 16.01 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.26 -5.36 5.68 56.52 0.32 -5.04 16 20 C -0.18 -3.60 9.96 -26.69 -0.27 -3.86 16 21 C -0.18 -3.74 7.67 -26.69 -0.20 -3.94 16 22 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 23 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.12 1.30 7.70 -51.93 -0.40 0.90 16 29 H 0.42 5.80 7.67 -34.47 -0.26 5.53 16 30 H 0.13 2.22 6.53 -51.93 -0.34 1.88 16 31 H 0.11 1.62 8.09 -51.92 -0.42 1.20 16 32 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.10 1.98 8.14 -51.93 -0.42 1.55 16 35 H 0.09 1.97 7.34 -51.93 -0.38 1.58 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 314.86 15.07 4.74 4.74 Total: -1.00 -35.28 314.86 -7.40 -42.68 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.24 Total: 7.37 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: -0.87 Total: -28.31 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.71 Total: -41.88 kcal Atomic # 8 Polarization: -48.37 SS G_CDS: -1.94 Total: -50.31 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.24 Total: 16.01 kcal Atomic # 16 Polarization: 50.24 SS G_CDS: -0.56 Total: 49.69 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.28 -7.40 -42.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663291502.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.569 kcal (2) G-P(sol) polarization free energy of solvation -35.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds