Wall clock time and date at job start Mon Mar 30 2020 20:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47457 * 2 1 4 4 O 1.20761 * 119.99568 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00257 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.46991 * 180.02562 * 5 3 2 7 7 S 1.65602 * 119.99699 * 165.27809 * 6 5 3 8 8 O 1.42108 * 104.27382 * 180.79762 * 7 6 5 9 9 O 1.42093 * 104.27799 * 308.65309 * 7 6 5 10 10 C 1.81394 * 104.45036 * 64.72636 * 7 6 5 11 11 C 1.52998 * 109.47299 * 173.87111 * 10 7 6 12 12 C 1.50699 * 115.54907 * 65.26885 * 11 10 7 13 13 H 1.07999 * 120.00357 * 268.54409 * 12 11 10 14 14 C 1.37880 * 119.99986 * 88.55068 * 12 11 10 15 15 N 1.31511 * 120.00224 * 174.70141 * 14 12 11 16 16 Si 1.86801 * 120.00053 * 354.69864 * 14 12 11 17 17 H 1.48499 * 109.47053 * 92.55135 * 16 14 12 18 18 H 1.48496 * 109.47263 * 212.55623 * 16 14 12 19 19 H 1.48498 * 109.46965 * 332.55652 * 16 14 12 20 20 C 1.53004 * 117.50138 * 279.60087 * 11 10 7 21 21 C 1.53000 * 117.50175 * 210.93986 * 11 10 7 22 22 H 1.08998 * 109.47042 * 299.99708 * 1 2 3 23 23 H 1.08995 * 109.47072 * 60.00092 * 1 2 3 24 24 H 1.09000 * 109.46834 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47432 * 239.99621 * 2 1 3 26 26 H 1.09008 * 109.47227 * 120.00147 * 2 1 3 27 27 H 1.09001 * 109.46563 * 60.00414 * 5 3 2 28 28 H 1.08992 * 109.47099 * 300.00311 * 5 3 2 29 29 H 0.97002 * 120.00318 * 345.00447 * 6 5 3 30 30 H 1.08996 * 109.47300 * 293.87248 * 10 7 6 31 31 H 1.08999 * 109.47414 * 53.87300 * 10 7 6 32 32 H 0.96997 * 120.00232 * 180.02562 * 15 14 12 33 33 H 1.09003 * 117.49542 * 0.02562 * 20 11 10 34 34 H 1.09000 * 117.49964 * 145.01302 * 20 11 10 35 35 H 1.08997 * 117.50053 * 214.97519 * 21 11 10 36 36 H 1.08998 * 117.49690 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2476 2.3387 0.0005 5 6 3.5140 1.6961 0.0006 6 7 3.7417 3.1433 0.0011 7 16 5.2405 3.7455 0.3662 8 8 5.0805 5.1553 0.2873 9 8 5.5824 3.1146 1.5927 10 6 6.3067 3.1498 -0.9749 11 6 7.6985 3.7692 -0.8335 12 6 8.4704 3.3598 0.3943 13 1 8.3973 3.9457 1.2986 14 6 9.2702 2.2370 0.3633 15 7 10.0239 1.9377 1.3985 16 14 9.2831 1.1410 -1.1494 17 1 10.3716 1.5715 -2.0632 18 1 9.5100 -0.2677 -0.7381 19 1 7.9778 1.2482 -1.8494 20 6 7.8911 5.1983 -1.3450 21 6 8.4934 4.0212 -2.1162 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 3.9654 1.2572 -0.8892 28 1 3.9647 1.2575 0.8907 29 1 3.0156 3.7486 -0.2163 30 1 6.3852 2.0639 -0.9217 31 1 5.8774 3.4363 -1.9350 32 1 10.5868 1.1481 1.3765 33 1 7.0261 5.6973 -1.7820 34 1 8.5764 5.8422 -0.7936 35 1 9.5747 3.8912 -2.0720 36 1 8.0250 3.7452 -3.0610 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663291502.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:04:45 Heat of formation + Delta-G solvation = -115.812142 kcal Electronic energy + Delta-G solvation = -19888.702774 eV Core-core repulsion = 16692.984776 eV Total energy + Delta-G solvation = -3195.717998 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.71606 -38.84061 -38.01860 -36.85067 -35.73264 -34.27029 -33.76601 -30.09477 -28.90212 -27.58901 -24.55698 -23.33991 -21.43841 -20.70741 -20.20260 -18.69566 -18.55936 -17.64834 -17.09437 -16.92679 -16.66324 -16.49080 -16.02674 -15.49990 -14.85519 -14.79826 -14.64967 -14.45748 -13.93131 -13.65596 -13.39168 -13.19991 -13.00060 -12.97617 -12.85733 -12.64951 -12.56791 -12.37388 -12.03572 -11.98307 -11.76150 -11.65793 -10.95291 -10.81342 -10.70212 -10.56938 -10.11593 -8.28868 -6.43356 -0.61817 0.93918 1.40248 1.41359 1.55360 1.94331 2.39705 2.83069 2.99460 3.02931 3.17043 3.40748 3.76162 3.97092 4.16476 4.24520 4.28518 4.34610 4.38308 4.38900 4.43472 4.60930 4.70304 4.87102 4.93205 5.04299 5.05117 5.10326 5.21937 5.35221 5.46104 5.63796 6.01518 6.22272 6.49153 6.68380 7.29643 8.87496 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.021506 B = 0.005921 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.642660 B = 4727.835200 C = 5265.201757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.170 4.170 3 C 0.359 3.641 4 O -0.486 6.486 5 C 0.042 3.958 6 N -1.117 6.117 7 S 2.619 3.381 8 O -0.996 6.996 9 O -0.992 6.992 10 C -0.568 4.568 11 C -0.033 4.033 12 C -0.516 4.516 13 H 0.025 0.975 14 C 0.024 3.976 15 N -0.943 5.943 16 Si 0.937 3.063 17 H -0.268 1.268 18 H -0.293 1.293 19 H -0.206 1.206 20 C -0.178 4.178 21 C -0.165 4.165 22 H 0.042 0.958 23 H 0.050 0.950 24 H 0.082 0.918 25 H 0.134 0.866 26 H 0.122 0.878 27 H 0.141 0.859 28 H 0.117 0.883 29 H 0.421 0.579 30 H 0.144 0.856 31 H 0.161 0.839 32 H 0.269 0.731 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.632 -7.405 -10.954 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.207 4.207 3 C 0.236 3.764 4 O -0.361 6.361 5 C -0.085 4.085 6 N -0.879 5.879 7 S 2.717 3.283 8 O -0.987 6.987 9 O -0.982 6.982 10 C -0.701 4.701 11 C -0.035 4.035 12 C -0.553 4.553 13 H 0.043 0.957 14 C -0.175 4.175 15 N -0.581 5.581 16 Si 0.758 3.242 17 H -0.193 1.193 18 H -0.220 1.220 19 H -0.128 1.128 20 C -0.216 4.216 21 C -0.203 4.203 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.101 0.899 25 H 0.152 0.848 26 H 0.140 0.860 27 H 0.159 0.841 28 H 0.135 0.865 29 H 0.258 0.742 30 H 0.162 0.838 31 H 0.179 0.821 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.623 -6.622 -10.020 19.706 hybrid contribution 0.499 -0.298 -0.257 0.635 sum -15.124 -6.921 -10.277 19.551 Atomic orbital electron populations 1.21618 0.94241 1.02783 1.01782 1.22149 0.97848 0.93118 1.07620 1.25169 0.89787 0.92678 0.68799 1.90380 1.59053 1.49210 1.37443 1.22218 0.98096 0.81055 1.07104 1.55410 1.28759 1.14524 1.89213 1.04497 0.73636 0.73415 0.76772 1.93475 1.85547 1.31460 1.88180 1.93519 1.83538 1.77774 1.43354 1.30140 1.08903 1.12621 1.18425 1.18789 0.91948 0.97591 0.95213 1.20440 1.27501 1.11312 0.96019 0.95684 1.26013 0.93173 0.98522 0.99745 1.70079 1.26996 1.27550 1.33490 0.85934 0.82311 0.76646 0.79276 1.19286 1.21951 1.12789 1.23107 1.03511 0.90916 1.04034 1.23097 0.99316 1.02725 0.95211 0.93867 0.93113 0.89868 0.84766 0.85961 0.84127 0.86524 0.74189 0.83847 0.82120 0.92247 0.87070 0.90456 0.90266 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.20 71.98 0.66 -1.20 16 2 C -0.17 -1.78 6.36 29.85 0.19 -1.59 16 3 C 0.36 6.68 7.23 29.10 0.21 6.89 16 4 O -0.49 -12.69 15.35 -1.45 -0.02 -12.72 16 5 C 0.04 0.82 6.54 85.63 0.56 1.38 16 6 N -1.12 -30.32 5.82 -190.81 -1.11 -31.43 16 7 S 2.62 98.53 5.19 -56.49 -0.29 98.24 16 8 O -1.00 -42.66 18.08 -127.65 -2.31 -44.97 16 9 O -0.99 -47.12 17.18 -127.65 -2.19 -49.31 16 10 C -0.57 -18.80 5.54 71.98 0.40 -18.41 16 11 C -0.03 -1.40 0.79 -52.93 -0.04 -1.44 16 12 C -0.52 -28.95 8.77 25.60 0.22 -28.72 16 13 H 0.02 1.65 8.06 -2.91 -0.02 1.62 16 14 C 0.02 1.37 5.47 84.66 0.46 1.83 16 15 N -0.94 -58.48 13.96 21.45 0.30 -58.18 16 16 Si 0.94 39.76 24.96 68.60 1.71 41.47 16 17 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 19 H -0.21 -7.01 5.68 99.48 0.57 -6.44 16 20 C -0.18 -6.89 9.96 30.62 0.30 -6.58 16 21 C -0.16 -5.97 7.67 30.62 0.23 -5.73 16 22 H 0.04 0.69 8.10 -2.39 -0.02 0.67 16 23 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 24 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.12 2.35 7.70 -2.39 -0.02 2.34 16 29 H 0.42 11.11 7.67 -96.74 -0.74 10.36 16 30 H 0.14 4.27 6.53 -2.39 -0.02 4.26 16 31 H 0.16 3.67 8.09 -2.39 -0.02 3.65 16 32 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 34 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.08 3.10 7.34 -2.39 -0.02 3.08 16 36 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -83.33 314.86 -0.51 -83.84 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.20 Total: 26.64 kcal Atomic # 6 Polarization: -56.79 SS G_CDS: 3.21 Total: -53.59 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -0.81 Total: -89.61 kcal Atomic # 8 Polarization: -102.48 SS G_CDS: -4.52 Total: -107.00 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 1.71 Total: 41.47 kcal Atomic # 16 Polarization: 98.53 SS G_CDS: -0.29 Total: 98.24 kcal Total: -83.33 -0.51 -83.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663291502.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.970 kcal (2) G-P(sol) polarization free energy of solvation -83.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds