Wall clock time and date at job start Mon Mar 30 2020 20:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.46995 * 179.97438 * 10 9 7 12 12 C 1.33796 * 124.17843 * 90.02242 * 11 10 9 13 13 O 1.21542 * 123.77127 * 359.96581 * 12 11 10 14 14 N 1.34526 * 112.45571 * 179.97438 * 12 11 10 15 15 C 1.47307 * 106.62400 * 0.02562 * 14 12 11 16 16 H 1.08998 * 110.59855 * 118.67438 * 15 14 12 17 17 C 1.50696 * 110.59906 * 241.47384 * 15 14 12 18 18 C 1.38675 * 120.41780 * 218.54404 * 17 15 14 19 19 C 1.38629 * 118.42443 * 179.97438 * 18 17 15 20 20 C 1.38227 * 119.15409 * 0.02562 * 19 18 17 21 21 N 1.31850 * 120.76895 * 359.97438 * 20 19 18 22 22 C 1.31890 * 121.72540 * 359.70540 * 21 20 19 23 23 C 1.34770 * 124.17902 * 269.72067 * 11 10 9 24 24 O 1.21234 * 127.15602 * 0.02562 * 23 11 10 25 25 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46909 * 299.99046 * 9 7 2 27 27 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 28 28 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 29 29 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 30 30 H 0.97004 * 126.68687 * 180.02562 * 14 12 11 31 31 H 1.08001 * 120.78660 * 0.02734 * 18 17 15 32 32 H 1.07995 * 120.42035 * 180.02562 * 19 18 17 33 33 H 1.08007 * 119.60980 * 179.97438 * 20 19 18 34 34 H 1.07992 * 119.61804 * 180.31652 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 1.1371 -5.5822 -1.1054 13 8 1.3648 -5.1873 -2.2321 14 7 0.4790 -6.7231 -0.8315 15 6 0.4159 -6.8313 0.6362 16 1 -0.6197 -6.8348 0.9763 17 6 1.1315 -8.0709 1.1077 18 6 0.6210 -8.8199 2.1572 19 6 1.3126 -9.9529 2.5569 20 6 2.4801 -10.2955 1.9010 21 7 2.9362 -9.5594 0.9067 22 6 2.3013 -8.4789 0.4958 23 6 1.1395 -5.5888 1.1164 24 8 1.3383 -5.2551 2.2648 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6242 -2.5567 0.8904 27 1 0.6248 -2.5571 -0.8896 28 1 2.8720 -3.6043 -0.8895 29 1 2.8721 -3.6042 0.8905 30 1 0.1167 -7.3520 -1.4751 31 1 -0.2942 -8.5280 2.6509 32 1 0.9439 -10.5601 3.3703 33 1 3.0251 -11.1765 2.2066 34 1 2.7028 -7.9038 -0.3254 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794791663.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:04:51 Heat of formation + Delta-G solvation = -10.581031 kcal Electronic energy + Delta-G solvation = -20690.795601 eV Core-core repulsion = 17396.489566 eV Total energy + Delta-G solvation = -3294.306034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.43393 -40.30177 -38.39631 -36.20311 -35.39876 -33.43133 -32.81048 -31.64028 -29.78061 -27.40545 -24.93267 -23.97206 -23.41273 -22.42072 -21.76212 -20.06156 -18.01319 -17.70354 -17.23303 -16.82652 -16.54514 -16.08415 -15.39607 -15.20579 -15.05158 -14.24869 -13.97057 -13.91205 -13.73626 -13.61908 -13.44084 -13.16421 -12.59081 -12.23280 -11.93877 -10.95465 -10.86907 -10.65957 -10.37328 -10.22972 -10.09338 -10.03162 -9.98698 -9.61023 -9.33557 -9.17636 -8.64812 -8.36786 -6.41358 -4.11498 0.60668 0.89037 1.70555 2.43304 3.06065 3.19981 3.41488 3.44773 3.46892 3.65174 3.91404 4.13933 4.26260 4.39922 4.53593 4.55416 4.61659 4.89868 5.10980 5.29502 5.37315 5.38644 5.69563 5.75695 5.85349 5.96526 6.12959 6.27052 6.45871 6.73460 7.13749 7.24343 7.43562 7.50892 7.59183 8.05806 8.26417 8.38894 8.80411 9.61207 10.99661 Molecular weight = 275.11amu Principal moments of inertia in cm(-1) A = 0.034080 B = 0.004065 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.399340 B = 6886.331825 C = 7111.976778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.018 3.982 3 Si 1.072 2.928 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.603 4.603 8 H 0.054 0.946 9 C -0.001 4.001 10 C 0.127 3.873 11 N -0.568 5.568 12 C 0.700 3.300 13 O -0.531 6.531 14 N -0.728 5.728 15 C 0.140 3.860 16 H 0.135 0.865 17 C -0.149 4.149 18 C -0.048 4.048 19 C -0.172 4.172 20 C 0.105 3.895 21 N -0.482 5.482 22 C 0.124 3.876 23 C 0.526 3.474 24 O -0.459 6.459 25 H 0.268 0.732 26 H 0.012 0.988 27 H 0.016 0.984 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.438 0.562 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 -21.790 3.935 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.186 4.186 3 Si 0.900 3.100 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.642 4.642 8 H 0.072 0.928 9 C -0.039 4.039 10 C 0.008 3.992 11 N -0.313 5.313 12 C 0.401 3.599 13 O -0.404 6.404 14 N -0.394 5.394 15 C 0.030 3.970 16 H 0.153 0.847 17 C -0.153 4.153 18 C -0.075 4.075 19 C -0.192 4.192 20 C -0.052 4.052 21 N -0.190 5.190 22 C -0.033 4.033 23 C 0.312 3.688 24 O -0.328 6.328 25 H 0.078 0.922 26 H 0.031 0.969 27 H 0.034 0.966 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.283 0.717 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.176 0.824 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.738 -19.846 3.540 20.173 hybrid contribution -0.876 -1.773 0.211 1.989 sum -0.138 -21.619 3.751 21.943 Atomic orbital electron populations 1.70782 1.06925 1.30584 1.46064 1.25890 0.96490 1.02803 0.93431 0.83500 0.74866 0.75028 0.76623 1.20709 1.21272 1.21303 1.21826 0.94395 0.91253 1.56684 0.92816 1.19541 0.94936 0.92566 0.96821 1.22091 0.95281 0.78424 1.03406 1.46753 1.53161 1.24470 1.06940 1.15956 0.78569 0.80617 0.84762 1.91029 1.59088 1.69789 1.20448 1.45562 1.62068 1.25349 1.06409 1.20756 1.01661 0.92326 0.82258 0.84744 1.20534 0.98255 0.97073 0.99409 1.21485 0.99356 0.92887 0.93737 1.22167 0.97076 0.98149 1.01778 1.22924 0.93320 0.97998 0.90982 1.67787 1.32246 1.05558 1.13371 1.22613 0.90462 0.92642 0.97621 1.20513 0.78587 0.84314 0.85429 1.90804 1.53451 1.70549 1.17980 0.92168 0.96947 0.96595 0.89321 0.89624 0.71746 0.83998 0.84174 0.82397 0.82949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.19 13.65 55.43 0.76 -27.43 16 2 C 0.02 0.53 5.46 -17.82 -0.10 0.43 16 3 Si 1.07 25.47 29.90 -169.99 -5.08 20.38 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.60 -17.31 9.11 -34.44 -0.31 -17.63 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.00 -0.02 4.61 -27.88 -0.13 -0.15 16 10 C 0.13 2.71 5.64 -4.04 -0.02 2.69 16 11 N -0.57 -10.29 2.60 -120.72 -0.31 -10.60 16 12 C 0.70 11.78 8.62 -88.02 -0.76 11.02 16 13 O -0.53 -10.90 17.48 5.33 0.09 -10.81 16 14 N -0.73 -8.33 5.51 -60.33 -0.33 -8.66 16 15 C 0.14 1.55 3.93 -69.36 -0.27 1.27 16 16 H 0.14 1.11 8.06 -51.93 -0.42 0.69 16 17 C -0.15 -1.51 5.06 -104.48 -0.53 -2.04 16 18 C -0.05 -0.39 9.84 -39.28 -0.39 -0.78 16 19 C -0.17 -1.23 10.11 -39.44 -0.40 -1.63 16 20 C 0.10 0.89 11.18 -17.55 -0.20 0.70 16 21 N -0.48 -5.52 10.36 -13.25 -0.14 -5.66 16 22 C 0.12 1.41 10.49 -17.55 -0.18 1.23 16 23 C 0.53 8.53 7.59 -10.55 -0.08 8.45 16 24 O -0.46 -8.72 17.75 5.60 0.10 -8.63 16 25 H 0.27 8.34 7.22 -40.82 -0.29 8.04 16 26 H 0.01 0.34 8.01 -51.93 -0.42 -0.08 16 27 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 28 H 0.09 1.89 7.86 -51.93 -0.41 1.48 16 29 H 0.09 1.79 8.00 -51.93 -0.42 1.38 16 30 H 0.44 3.71 8.96 -40.82 -0.37 3.35 16 31 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 33 H 0.16 0.89 8.06 -52.48 -0.42 0.46 16 34 H 0.15 1.79 7.71 -52.49 -0.40 1.39 16 LS Contribution 305.99 15.07 4.61 4.61 Total: -1.00 -36.01 305.99 -7.29 -43.30 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -3.61 Total: -0.07 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -3.37 Total: 3.57 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.03 Total: -52.36 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.19 Total: -19.43 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -36.01 -7.29 -43.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794791663.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.719 kcal (2) G-P(sol) polarization free energy of solvation -36.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds