Wall clock time and date at job start Mon Mar 30 2020 20:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30799 * 1 3 3 Si 1.86800 * 119.99926 * 2 1 4 4 H 1.48500 * 109.47095 * 274.65422 * 3 2 1 5 5 H 1.48506 * 109.46948 * 34.65089 * 3 2 1 6 6 H 1.48505 * 109.47316 * 154.64942 * 3 2 1 7 7 C 1.40007 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99869 * 162.13338 * 7 2 1 9 9 C 1.40992 * 119.99854 * 342.12984 * 7 2 1 10 10 C 1.40956 * 120.11090 * 155.01057 * 9 7 2 11 11 C 1.36226 * 119.87762 * 180.02562 * 10 9 7 12 12 C 1.39980 * 120.11891 * 0.02562 * 11 10 9 13 13 C 1.47896 * 119.88703 * 179.97438 * 12 11 10 14 14 C 1.40655 * 119.69509 * 359.97438 * 13 12 11 15 15 C 1.35821 * 120.87557 * 180.25731 * 14 13 12 16 16 C 1.40444 * 119.84928 * 359.45561 * 15 14 13 17 17 C 1.40599 * 121.97995 * 180.24366 * 16 15 14 18 18 C 1.36264 * 118.73723 * 180.29694 * 17 16 15 19 19 N 1.32587 * 121.90160 * 359.97017 * 18 17 16 20 20 C 1.31245 * 122.73506 * 0.05309 * 19 18 17 21 21 C 1.40564 * 119.88401 * 359.94891 * 20 19 18 22 22 C 1.38651 * 119.70666 * 179.97438 * 13 12 11 23 23 C 1.39993 * 120.23284 * 0.25095 * 12 11 10 24 24 C 1.36226 * 120.11189 * 359.48586 * 23 12 11 25 25 H 0.96999 * 120.00250 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.06109 * 359.97438 * 10 9 7 27 27 H 1.07996 * 119.93332 * 180.02562 * 11 10 9 28 28 H 1.07998 * 119.56563 * 359.97438 * 14 13 12 29 29 H 1.08006 * 120.07094 * 179.72716 * 15 14 13 30 30 H 1.08002 * 120.63202 * 0.31008 * 17 16 15 31 31 H 1.07996 * 119.04974 * 180.02562 * 18 17 16 32 32 H 1.08006 * 120.05702 * 179.97438 * 20 19 18 33 33 H 1.08001 * 120.34448 * 0.04444 * 22 13 12 34 34 H 1.07992 * 119.94287 * 179.74764 * 23 12 11 35 35 H 1.08001 * 120.05467 * 180.23089 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.3911 2.1032 -1.3955 5 1 1.4920 2.6223 0.7961 6 1 3.5853 1.4139 0.5995 7 6 2.0081 -1.2125 0.0005 8 1 3.0490 -1.2351 -0.2864 9 6 1.3541 -2.4039 0.3758 10 6 1.8233 -3.6467 -0.0956 11 6 1.1875 -4.7948 0.2695 12 6 0.0700 -4.7419 1.1108 13 6 -0.6167 -5.9915 1.5035 14 6 -0.1414 -7.2269 1.0276 15 6 -0.7567 -8.3886 1.3688 16 6 -1.8760 -8.3640 2.2169 17 6 -2.5439 -9.5395 2.6028 18 6 -3.6270 -9.4383 3.4234 19 7 -4.0643 -8.2672 3.8652 20 6 -3.4921 -7.1298 3.5467 21 6 -2.3666 -7.1237 2.7047 22 6 -1.7230 -5.9348 2.3373 23 6 -0.4036 -3.5098 1.5770 24 6 0.2282 -2.3562 1.2222 25 1 -0.4850 0.8400 -0.0004 26 1 2.6847 -3.6885 -0.7457 27 1 1.5465 -5.7476 -0.0907 28 1 0.7214 -7.2516 0.3786 29 1 -0.3834 -9.3296 0.9924 30 1 -2.2048 -10.5043 2.2555 31 1 -4.1435 -10.3381 3.7233 32 1 -3.8851 -6.2002 3.9312 33 1 -2.0849 -4.9839 2.6997 34 1 -1.2686 -3.4741 2.2225 35 1 -0.1357 -1.4064 1.5855 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241676607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:05:35 Heat of formation + Delta-G solvation = 60.321217 kcal Electronic energy + Delta-G solvation = -18963.118587 eV Core-core repulsion = 16082.736368 eV Total energy + Delta-G solvation = -2880.382219 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.101 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.41700 -38.15918 -36.60823 -34.06523 -32.71315 -31.35527 -30.37176 -29.42658 -28.53051 -25.54981 -23.84790 -22.97186 -22.22418 -20.72542 -20.28257 -17.83041 -17.36465 -16.87966 -16.13723 -15.48977 -14.86529 -14.76227 -13.97077 -13.91644 -13.74941 -13.47422 -13.24263 -12.87090 -12.58596 -12.26053 -12.20158 -11.81707 -11.51134 -11.29373 -11.15289 -10.99750 -10.80763 -10.58118 -9.92865 -9.89910 -9.55965 -9.40334 -9.23913 -8.80686 -8.05414 -7.75162 -7.14099 -6.97918 -4.54945 0.60073 1.15163 2.12790 2.58934 2.92185 2.93151 2.97143 2.99686 3.57027 3.71983 4.29468 4.58567 4.60270 4.79785 5.03006 5.12807 5.25885 5.37728 5.52574 5.56688 5.61657 5.79304 6.00222 6.03218 6.13125 6.14999 6.40144 6.43236 6.65791 6.72129 6.76368 6.85284 6.90823 7.04480 7.20618 7.21542 7.39475 7.70790 7.81552 7.94081 8.02707 8.18065 8.37009 8.59115 8.71709 9.85897 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.040407 B = 0.003540 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.777509 B = 7908.730265 C = 8523.715552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.440 4.440 8 H 0.084 0.916 9 C 0.120 3.880 10 C -0.230 4.230 11 C -0.060 4.060 12 C -0.214 4.214 13 C 0.030 3.970 14 C -0.102 4.102 15 C -0.113 4.113 16 C -0.057 4.057 17 C -0.146 4.146 18 C 0.046 3.954 19 N -0.493 5.493 20 C 0.131 3.869 21 C -0.086 4.086 22 C -0.141 4.141 23 C -0.071 4.071 24 C -0.173 4.173 25 H 0.287 0.713 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.144 0.856 32 H 0.158 0.842 33 H 0.130 0.870 34 H 0.094 0.906 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.993 -8.838 2.630 9.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.148 4.148 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.468 4.468 8 H 0.102 0.898 9 C 0.117 3.883 10 C -0.250 4.250 11 C -0.078 4.078 12 C -0.215 4.215 13 C 0.030 3.970 14 C -0.121 4.121 15 C -0.131 4.131 16 C -0.062 4.062 17 C -0.165 4.165 18 C -0.097 4.097 19 N -0.201 5.201 20 C -0.040 4.040 21 C -0.088 4.088 22 C -0.161 4.161 23 C -0.089 4.089 24 C -0.192 4.192 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.161 0.839 32 H 0.175 0.825 33 H 0.148 0.852 34 H 0.112 0.888 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.944 -8.819 3.148 9.816 hybrid contribution 1.064 0.710 -0.717 1.466 sum -1.880 -8.109 2.431 8.672 Atomic orbital electron populations 1.69808 1.07841 1.30054 1.31819 1.26074 0.94832 1.01895 0.92033 0.86215 0.80820 0.79988 0.79383 1.19246 1.19696 1.18110 1.19778 0.98374 0.91337 1.37283 0.89798 1.17763 0.90710 0.92116 0.87693 1.20696 1.04275 0.92853 1.07143 1.20414 0.94583 0.96736 0.96071 1.18042 1.01977 0.90758 1.10770 1.19037 0.92556 0.92968 0.92415 1.21150 0.99774 0.91839 0.99380 1.20766 0.95512 0.98382 0.98467 1.18091 0.96677 0.92765 0.98635 1.21804 0.97186 0.98002 0.99553 1.21953 0.95519 0.95355 0.96886 1.67335 1.31173 0.98564 1.23033 1.23138 0.91295 0.96242 0.93367 1.18929 0.97174 0.93810 0.98852 1.21178 0.97201 0.96613 1.01139 1.20540 0.97810 0.92294 0.98266 1.20998 0.99634 0.97047 1.01518 0.90224 0.88601 0.88878 0.85656 0.85895 0.85316 0.83880 0.82469 0.85183 0.88787 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.43 10.97 55.55 0.61 -17.82 16 2 C 0.07 1.68 5.13 -17.33 -0.09 1.59 16 3 Si 0.91 17.09 29.60 -169.99 -5.03 12.06 16 4 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 7 C -0.44 -10.77 9.03 -37.88 -0.34 -11.11 16 8 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 9 C 0.12 2.99 5.57 -106.80 -0.59 2.39 16 10 C -0.23 -5.27 9.73 -39.28 -0.38 -5.65 16 11 C -0.06 -1.26 9.35 -39.65 -0.37 -1.63 16 12 C -0.21 -4.53 5.90 -104.63 -0.62 -5.15 16 13 C 0.03 0.56 5.88 -104.88 -0.62 -0.05 16 14 C -0.10 -1.66 9.33 -39.54 -0.37 -2.03 16 15 C -0.11 -1.64 9.77 -39.62 -0.39 -2.03 16 16 C -0.06 -0.87 5.75 -106.73 -0.61 -1.49 16 17 C -0.15 -1.91 9.87 -39.40 -0.39 -2.30 16 18 C 0.05 0.61 11.07 -17.94 -0.20 0.42 16 19 N -0.49 -7.51 10.30 -13.10 -0.13 -7.65 16 20 C 0.13 1.96 11.05 -16.93 -0.19 1.77 16 21 C -0.09 -1.39 5.74 -106.87 -0.61 -2.01 16 22 C -0.14 -2.44 9.21 -38.73 -0.36 -2.79 16 23 C -0.07 -1.56 9.34 -39.65 -0.37 -1.93 16 24 C -0.17 -4.20 8.63 -39.28 -0.34 -4.54 16 25 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 26 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 27 H 0.09 1.68 6.12 -52.49 -0.32 1.36 16 28 H 0.13 1.84 6.11 -52.49 -0.32 1.52 16 29 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 30 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 33 H 0.13 2.10 6.13 -52.49 -0.32 1.78 16 34 H 0.09 1.85 6.14 -52.49 -0.32 1.53 16 35 H 0.12 2.95 6.18 -52.49 -0.32 2.63 16 LS Contribution 299.70 15.07 4.52 4.52 Total: -1.00 -26.60 299.70 -10.15 -36.75 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -3.27 Total: 8.69 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: -6.84 Total: -36.54 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.47 Total: -25.47 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -26.60 -10.15 -36.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241676607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.067 kcal (2) G-P(sol) polarization free energy of solvation -26.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds