Wall clock time and date at job start Mon Mar 30 2020 20:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35995 * 116.99951 * 2 1 4 4 C 1.38569 * 120.07327 * 0.28063 * 3 2 1 5 5 C 1.38241 * 119.99710 * 180.27475 * 4 3 2 6 6 C 1.38249 * 120.14981 * 359.72019 * 5 4 3 7 7 C 1.38239 * 120.14522 * 0.02562 * 6 5 4 8 8 C 1.38562 * 120.00257 * 0.02562 * 7 6 5 9 9 O 1.36000 * 120.07779 * 180.02562 * 8 7 6 10 10 C 1.42900 * 116.99539 * 359.97438 * 9 8 7 11 11 C 1.50702 * 109.46543 * 180.02562 * 10 9 8 12 12 C 1.34943 * 125.48982 * 359.97438 * 11 10 9 13 13 N 1.36671 * 106.72656 * 179.97438 * 12 11 10 14 14 C 1.37572 * 126.88482 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99710 * 0.02562 * 14 13 12 16 16 C 1.39012 * 119.99840 * 179.97438 * 14 13 12 17 17 N 1.31247 * 120.00223 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99762 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46755 * 90.00310 * 18 16 14 20 20 H 1.48498 * 109.47219 * 210.00286 * 18 16 14 21 21 H 1.48502 * 109.47343 * 330.00388 * 18 16 14 22 22 N 1.40327 * 106.22709 * 0.02562 * 13 12 11 23 23 N 1.28748 * 108.03294 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.46893 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47092 * 299.99277 * 1 2 3 26 26 H 1.08995 * 109.47670 * 59.99572 * 1 2 3 27 27 H 1.08001 * 119.99759 * 0.02562 * 4 3 2 28 28 H 1.08006 * 119.92440 * 179.74666 * 5 4 3 29 29 H 1.07998 * 119.92967 * 180.02562 * 6 5 4 30 30 H 1.08000 * 120.00091 * 179.97438 * 7 6 5 31 31 H 1.08996 * 109.46700 * 60.00520 * 10 9 8 32 32 H 1.08992 * 109.47303 * 300.00065 * 10 9 8 33 33 H 1.07999 * 126.63910 * 0.02562 * 12 11 10 34 34 H 0.96995 * 120.00052 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0059 5 6 1.9223 3.6057 0.0001 6 6 3.3028 3.6799 -0.0056 7 6 4.0602 2.5234 -0.0062 8 6 3.4360 1.2864 -0.0016 9 8 4.1796 0.1477 -0.0016 10 6 5.6003 0.3008 -0.0072 11 6 6.2519 -1.0581 -0.0070 12 6 5.5998 -2.2396 -0.0018 13 7 6.5557 -3.2164 -0.0043 14 6 6.3467 -4.5762 -0.0003 15 1 5.3402 -4.9678 0.0050 16 6 7.4311 -5.4460 -0.0041 17 7 8.6542 -4.9700 -0.0111 18 14 7.1473 -7.2923 0.0006 19 1 7.0652 -7.7840 -1.3982 20 1 8.2740 -7.9645 0.6963 21 1 5.8772 -7.5962 0.7075 22 7 7.7929 -2.5544 -0.0105 23 7 7.5667 -1.2869 -0.0110 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 0.2146 2.3196 0.0109 28 1 1.3341 4.5115 0.0006 29 1 3.7907 4.6434 -0.0097 30 1 5.1385 2.5841 -0.0112 31 1 5.9097 0.8526 0.8804 32 1 5.9033 0.8484 -0.8995 33 1 4.5297 -2.3851 0.0025 34 1 9.4108 -5.5770 -0.0134 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600973817.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:57 Heat of formation + Delta-G solvation = 48.915221 kcal Electronic energy + Delta-G solvation = -20144.467635 eV Core-core repulsion = 16852.741551 eV Total energy + Delta-G solvation = -3291.726083 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.106 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.46293 -40.04152 -38.25305 -36.71856 -34.13396 -31.42507 -30.80394 -30.28463 -29.19314 -27.20174 -26.35000 -24.95630 -22.25837 -22.02793 -21.25514 -19.60990 -18.56471 -17.54950 -16.97723 -16.26664 -15.97438 -15.51109 -15.20444 -14.76688 -14.68913 -14.54257 -13.95974 -13.75676 -13.09156 -12.95854 -12.59258 -12.21296 -12.13555 -11.80621 -11.43201 -11.39984 -11.16387 -11.12735 -10.99410 -10.91303 -10.58163 -9.89345 -9.66454 -9.30162 -8.72654 -8.69207 -7.71874 -7.38661 -6.80751 -4.60984 1.30653 1.48822 2.84361 2.97422 3.03578 3.31028 3.35044 3.43219 3.70939 3.76786 4.00830 4.64430 4.77808 4.82986 4.91937 5.00203 5.09657 5.11449 5.34940 5.42402 5.45118 5.61356 5.68859 5.87940 5.92325 6.19471 6.28718 6.45695 6.49620 6.67690 6.78789 6.89726 7.02946 7.27995 7.65820 7.85380 7.92512 8.51504 9.12821 10.13645 10.18140 Molecular weight = 275.11amu Principal moments of inertia in cm(-1) A = 0.027786 B = 0.003932 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.474145 B = 7119.576451 C = 8106.598886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.093 3.907 4 C -0.175 4.175 5 C -0.129 4.129 6 C -0.116 4.116 7 C -0.178 4.178 8 C 0.117 3.883 9 O -0.295 6.295 10 C 0.168 3.832 11 C -0.087 4.087 12 C -0.089 4.089 13 N -0.150 5.150 14 C -0.313 4.313 15 H 0.122 0.878 16 C 0.047 3.953 17 N -0.762 5.762 18 Si 0.943 3.057 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.260 1.260 22 N -0.088 5.088 23 N -0.322 5.322 24 H 0.099 0.901 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.131 0.869 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.138 0.862 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.162 0.838 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.574 10.455 0.026 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.216 6.216 3 C 0.048 3.952 4 C -0.194 4.194 5 C -0.147 4.147 6 C -0.134 4.134 7 C -0.196 4.196 8 C 0.070 3.930 9 O -0.208 6.208 10 C 0.091 3.909 11 C -0.233 4.233 12 C -0.243 4.243 13 N 0.079 4.921 14 C -0.450 4.450 15 H 0.140 0.860 16 C -0.173 4.173 17 N -0.388 5.388 18 Si 0.766 3.234 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.184 1.184 22 N -0.065 5.065 23 N -0.183 5.183 24 H 0.117 0.883 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.149 0.851 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.156 0.844 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.180 0.820 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.681 9.881 0.023 16.076 hybrid contribution -1.393 -0.530 0.000 1.490 sum -14.073 9.351 0.023 16.897 Atomic orbital electron populations 1.23031 0.79036 1.03884 1.00812 1.86241 1.20581 1.25830 1.88941 1.18305 0.89274 0.85230 1.02425 1.21005 0.99663 0.91629 1.07131 1.20768 0.94572 0.96769 1.02609 1.20841 0.93680 0.97795 1.01125 1.21203 1.00919 0.91099 1.06413 1.18345 0.88350 0.86530 0.99775 1.86147 1.19181 1.27573 1.87859 1.20344 0.76005 0.94001 1.00511 1.20188 0.90880 0.93109 1.19123 1.22312 0.95839 0.88047 1.18105 1.46697 1.05202 1.06231 1.33974 1.20183 0.95837 0.76930 1.52042 0.86036 1.25793 0.94386 1.02274 0.94827 1.70134 0.98515 1.37022 1.33152 0.85681 0.79189 0.79248 0.79281 1.19234 1.19780 1.18440 1.82527 1.00239 0.94902 1.28828 1.73967 1.13810 1.11623 1.18935 0.88295 0.92980 0.92969 0.85143 0.85986 0.85792 0.84417 0.91877 0.91882 0.82032 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.30 -4.53 10.28 -34.22 -0.35 -4.89 16 3 C 0.09 1.38 6.70 -39.12 -0.26 1.11 16 4 C -0.18 -2.02 9.04 -39.46 -0.36 -2.38 16 5 C -0.13 -1.36 10.04 -39.58 -0.40 -1.76 16 6 C -0.12 -1.30 10.04 -39.58 -0.40 -1.70 16 7 C -0.18 -2.41 9.04 -39.46 -0.36 -2.76 16 8 C 0.12 1.89 6.70 -39.12 -0.26 1.63 16 9 O -0.30 -5.63 9.17 -34.24 -0.31 -5.94 16 10 C 0.17 3.24 5.36 36.01 0.19 3.43 16 11 C -0.09 -2.14 7.08 -83.05 -0.59 -2.73 16 12 C -0.09 -2.26 10.87 -16.56 -0.18 -2.44 16 13 N -0.15 -4.25 3.78 -11.47 -0.04 -4.29 16 14 C -0.31 -8.31 10.31 -14.69 -0.15 -8.46 16 15 H 0.12 2.88 7.83 -52.49 -0.41 2.46 16 16 C 0.05 1.18 5.50 -17.51 -0.10 1.09 16 17 N -0.76 -20.86 11.89 55.50 0.66 -20.20 16 18 Si 0.94 18.41 29.55 -169.99 -5.02 13.39 16 19 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 20 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 22 N -0.09 -2.65 11.73 60.35 0.71 -1.94 16 23 N -0.32 -8.95 12.33 33.16 0.41 -8.54 16 24 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 26 H 0.05 0.41 7.68 -51.93 -0.40 0.01 16 27 H 0.13 1.14 6.30 -52.49 -0.33 0.81 16 28 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 29 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.14 1.71 6.30 -52.49 -0.33 1.38 16 31 H 0.06 1.11 7.66 -51.93 -0.40 0.71 16 32 H 0.06 1.11 7.66 -51.93 -0.40 0.71 16 33 H 0.16 3.72 7.83 -52.49 -0.41 3.31 16 34 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 LS Contribution 302.01 15.07 4.55 4.55 Total: -1.00 -33.27 302.01 -4.75 -38.02 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -3.48 Total: 3.56 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -1.86 Total: -13.71 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 1.73 Total: -34.98 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.67 Total: -10.83 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.39 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.27 -4.75 -38.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600973817.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.936 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds