Wall clock time and date at job start Mon Mar 30 2020 20:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47118 * 2 1 4 4 C 1.50705 * 109.47020 * 120.00162 * 2 1 3 5 5 C 1.38220 * 120.01265 * 59.73071 * 4 2 1 6 6 C 1.38221 * 120.02223 * 179.72186 * 5 4 2 7 7 C 1.38271 * 120.05113 * 0.54374 * 6 5 4 8 8 C 1.38170 * 120.02755 * 359.73014 * 7 6 5 9 9 C 1.38439 * 120.00911 * 239.99674 * 4 2 1 10 10 F 1.35094 * 120.02930 * 0.02844 * 9 4 2 11 11 N 1.46503 * 109.47015 * 240.00012 * 2 1 3 12 12 C 1.35312 * 125.86998 * 324.99976 * 11 2 1 13 13 C 1.35341 * 106.17598 * 179.97438 * 12 11 2 14 14 C 1.50700 * 126.75090 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46869 * 125.00400 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 N 1.33772 * 106.49948 * 0.26771 * 13 12 11 24 24 N 1.28637 * 108.88114 * 359.55958 * 23 13 12 25 25 H 1.08996 * 109.47238 * 59.99475 * 1 2 3 26 26 H 1.09002 * 109.47118 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46949 * 299.99741 * 1 2 3 28 28 H 1.07995 * 119.98690 * 359.97438 * 5 4 2 29 29 H 1.08001 * 119.97508 * 180.26991 * 6 5 4 30 30 H 1.08003 * 119.98611 * 179.74647 * 7 6 5 31 31 H 1.07995 * 120.01671 * 180.02562 * 8 7 6 32 32 H 1.08004 * 126.90917 * 0.02562 * 12 11 2 33 33 H 1.09004 * 109.47210 * 5.00693 * 14 13 12 34 34 H 1.08994 * 109.47551 * 245.00345 * 14 13 12 35 35 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.6940 -2.0321 1.4523 6 6 2.1593 -2.6856 2.5778 7 6 2.9544 -2.0150 3.4888 8 6 3.2892 -0.6921 3.2721 9 6 2.8283 -0.0379 2.1419 10 9 3.1547 1.2556 1.9292 11 7 2.0183 -0.6906 -1.1962 12 6 1.4357 -1.7587 -1.7884 13 6 2.2124 -2.0703 -2.8521 14 6 1.9878 -3.1899 -3.8354 15 6 1.9574 -2.6311 -5.2346 16 1 2.0880 -1.5711 -5.3958 17 6 1.7690 -3.4737 -6.3096 18 7 1.6103 -4.7644 -6.1134 19 14 1.7388 -2.7819 -8.0445 20 1 3.1152 -2.7836 -8.6021 21 1 0.8586 -3.6210 -8.8968 22 1 1.2188 -1.3913 -8.0141 23 7 3.2221 -1.1928 -2.8552 24 7 3.0750 -0.3853 -1.8647 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.0692 -2.5555 0.7438 29 1 1.8980 -3.7196 2.7481 30 1 3.3140 -2.5254 4.3700 31 1 3.9106 -0.1686 3.9835 32 1 0.5322 -2.2611 -1.4756 33 1 1.0380 -3.6788 -3.6187 34 1 2.7972 -3.9151 -3.7514 35 1 1.4774 -5.3572 -6.8697 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600976893.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:03:59 Heat of formation + Delta-G solvation = 51.704374 kcal Electronic energy + Delta-G solvation = -20407.834536 eV Core-core repulsion = 17128.602189 eV Total energy + Delta-G solvation = -3279.232347 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.06365 -44.14105 -40.25773 -37.02131 -35.45142 -33.22965 -32.37303 -31.59189 -30.27704 -29.47756 -25.97213 -25.32638 -23.97023 -23.46152 -22.11373 -21.38702 -18.86208 -18.52626 -18.15924 -17.70574 -17.15046 -16.69955 -16.53298 -16.35474 -15.62717 -15.24265 -14.91844 -14.60453 -14.35330 -14.23447 -14.06760 -13.70046 -13.45764 -13.15641 -13.08518 -12.80153 -12.64689 -12.55976 -12.30068 -12.15424 -11.86467 -11.68115 -11.37797 -10.92508 -10.57867 -10.09603 -9.88313 -9.77082 -8.18325 -6.26540 -0.05364 0.15061 0.74014 1.40533 1.42690 1.51779 1.54158 1.75976 2.45024 2.56731 3.11906 3.14649 3.20662 3.39817 3.68355 3.80484 3.85949 4.07540 4.19309 4.30331 4.32289 4.41878 4.58595 4.62958 4.76891 4.81117 4.97153 5.03893 5.09858 5.24931 5.30787 5.38182 5.44174 5.55360 5.77544 5.78642 5.83064 6.23453 6.81321 7.39990 7.69854 8.92597 Molecular weight = 275.11amu Principal moments of inertia in cm(-1) A = 0.031834 B = 0.003994 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.346728 B = 7008.260512 C = 7332.876490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.179 3.821 3 H 0.112 0.888 4 C -0.156 4.156 5 C -0.082 4.082 6 C -0.128 4.128 7 C -0.076 4.076 8 C -0.158 4.158 9 C 0.095 3.905 10 F -0.146 7.146 11 N -0.277 5.277 12 C -0.045 4.045 13 C -0.005 4.005 14 C 0.104 3.896 15 C -0.524 4.524 16 H 0.042 0.958 17 C 0.011 3.989 18 N -0.925 5.925 19 Si 0.960 3.040 20 H -0.277 1.277 21 H -0.273 1.273 22 H -0.272 1.272 23 N -0.307 5.307 24 N -0.126 5.126 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.141 0.859 29 H 0.158 0.842 30 H 0.168 0.832 31 H 0.157 0.843 32 H 0.222 0.778 33 H 0.037 0.963 34 H 0.008 0.992 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.533 5.909 23.734 24.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.079 3.921 3 H 0.130 0.870 4 C -0.158 4.158 5 C -0.100 4.100 6 C -0.146 4.146 7 C -0.094 4.094 8 C -0.176 4.176 9 C 0.075 3.925 10 F -0.125 7.125 11 N -0.072 5.072 12 C -0.195 4.195 13 C -0.143 4.143 14 C 0.065 3.935 15 C -0.563 4.563 16 H 0.061 0.939 17 C -0.187 4.187 18 N -0.566 5.566 19 Si 0.785 3.215 20 H -0.203 1.203 21 H -0.198 1.198 22 H -0.197 1.197 23 N -0.173 5.173 24 N -0.104 5.104 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.129 0.871 28 H 0.159 0.841 29 H 0.176 0.824 30 H 0.186 0.814 31 H 0.175 0.825 32 H 0.239 0.761 33 H 0.055 0.945 34 H 0.026 0.974 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.341 6.805 23.536 24.727 hybrid contribution -0.509 -0.075 -1.133 1.244 sum -3.850 6.730 22.403 23.707 Atomic orbital electron populations 1.22240 0.88204 1.05495 1.05193 1.20608 0.98053 0.95998 0.77444 0.87003 1.19871 1.02837 0.96846 0.96247 1.21207 0.98506 0.92203 0.98121 1.21617 0.97652 1.01741 0.93576 1.21531 0.95179 0.92787 0.99925 1.21475 1.02556 0.96725 0.96888 1.17810 0.98557 0.79057 0.97045 1.91473 1.91108 1.34944 1.94934 1.47663 1.17137 1.21514 1.20891 1.23573 1.04139 0.94629 0.97166 1.22700 0.93320 1.00099 0.98197 1.17387 0.96589 0.89067 0.90439 1.21276 1.49246 0.93687 0.92084 0.93922 1.25750 0.94743 0.95107 1.03147 1.70032 1.50279 1.03743 1.32498 0.85526 0.78189 0.78381 0.79396 1.20295 1.19751 1.19684 1.74991 1.23862 1.04862 1.13633 1.78128 1.06156 1.22324 1.03811 0.90931 0.89380 0.87095 0.84131 0.82387 0.81441 0.82532 0.76111 0.94457 0.97397 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.64 71.98 0.62 -1.86 16 2 C 0.18 4.30 3.46 44.25 0.15 4.45 16 3 H 0.11 2.79 7.13 -2.39 -0.02 2.78 16 4 C -0.16 -3.41 4.99 -19.82 -0.10 -3.51 16 5 C -0.08 -1.52 8.83 22.26 0.20 -1.32 16 6 C -0.13 -1.82 10.04 22.27 0.22 -1.59 16 7 C -0.08 -0.96 10.04 22.26 0.22 -0.73 16 8 C -0.16 -2.53 10.03 22.31 0.22 -2.30 16 9 C 0.10 2.06 7.25 22.38 0.16 2.22 16 10 F -0.15 -3.55 16.19 44.97 0.73 -2.82 16 11 N -0.28 -9.38 3.18 -330.73 -1.05 -10.43 16 12 C -0.05 -1.59 9.52 83.49 0.80 -0.79 16 13 C 0.00 -0.23 6.44 41.59 0.27 0.04 16 14 C 0.10 5.63 5.55 29.10 0.16 5.79 16 15 C -0.52 -31.25 9.09 25.60 0.23 -31.02 16 16 H 0.04 2.62 7.74 -2.91 -0.02 2.60 16 17 C 0.01 0.63 5.46 84.66 0.46 1.10 16 18 N -0.93 -55.37 13.29 21.45 0.28 -55.09 16 19 Si 0.96 45.88 29.54 68.60 2.03 47.90 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 23 N -0.31 -15.56 12.40 -48.60 -0.60 -16.16 16 24 N -0.13 -5.51 13.16 37.02 0.49 -5.03 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.09 1.19 6.40 -2.39 -0.02 1.18 16 27 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.14 2.36 6.55 -2.91 -0.02 2.34 16 29 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 30 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 31 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.22 5.61 7.09 -2.91 -0.02 5.59 16 33 H 0.04 1.96 8.12 -2.38 -0.02 1.94 16 34 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 Total: -1.00 -76.20 308.37 6.61 -69.59 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: 1.11 Total: 1.57 kcal Atomic # 6 Polarization: -33.17 SS G_CDS: 3.63 Total: -29.54 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -0.88 Total: -86.70 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.73 Total: -2.82 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -76.20 6.61 -69.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600976893.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.298 kcal (2) G-P(sol) polarization free energy of solvation -76.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds