Wall clock time and date at job start Mon Mar 30 2020 20:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47392 * 2 1 4 4 C 1.50697 * 109.47090 * 239.99709 * 2 1 3 5 5 C 1.38216 * 120.01502 * 299.98000 * 4 2 1 6 6 C 1.38226 * 120.02514 * 180.02562 * 5 4 2 7 7 C 1.38265 * 120.05353 * 0.02562 * 6 5 4 8 8 C 1.38177 * 120.02212 * 359.70277 * 7 6 5 9 9 C 1.38436 * 120.00925 * 119.99755 * 4 2 1 10 10 F 1.35104 * 120.02854 * 359.95937 * 9 4 2 11 11 N 1.46504 * 109.47361 * 119.99755 * 2 1 3 12 12 C 1.35313 * 125.86475 * 34.71625 * 11 2 1 13 13 C 1.35351 * 106.17348 * 179.90783 * 12 11 2 14 14 C 1.50701 * 126.74874 * 180.12863 * 13 12 11 15 15 C 1.50703 * 109.47226 * 125.24476 * 14 13 12 16 16 H 1.07995 * 119.99655 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99804 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00480 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99801 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46996 * 59.99648 * 19 17 15 21 21 H 1.48492 * 109.47124 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46876 * 299.99896 * 19 17 15 23 23 N 1.33767 * 106.49723 * 0.34816 * 13 12 11 24 24 N 1.28634 * 108.88642 * 359.77873 * 23 13 12 25 25 H 1.09003 * 109.47028 * 300.00277 * 1 2 3 26 26 H 1.08995 * 109.47383 * 59.99834 * 1 2 3 27 27 H 1.09003 * 109.46935 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.98614 * 0.03902 * 5 4 2 29 29 H 1.08001 * 119.97063 * 179.97438 * 6 5 4 30 30 H 1.07994 * 119.98907 * 179.97438 * 7 6 5 31 31 H 1.07999 * 120.01627 * 180.27269 * 8 7 6 32 32 H 1.08004 * 126.91348 * 0.02562 * 12 11 2 33 33 H 1.09009 * 109.46777 * 245.23912 * 14 13 12 34 34 H 1.08997 * 109.47354 * 5.23727 * 14 13 12 35 35 H 0.96997 * 120.00451 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.6990 -2.0339 -1.4492 6 6 2.1600 -2.6859 -2.5774 7 6 2.9556 -2.0154 -3.4881 8 6 3.2855 -0.6908 -3.2743 9 6 2.8282 -0.0379 -2.1418 10 9 3.1543 1.2559 -1.9293 11 7 2.0184 -0.6906 1.1962 12 6 1.4329 -1.7553 1.7915 13 6 2.2123 -2.0699 2.8525 14 6 1.9873 -3.1891 3.8363 15 6 3.2162 -4.0592 3.8971 16 1 4.0742 -3.8254 3.2843 17 6 3.2451 -5.1537 4.7350 18 7 2.2005 -5.4381 5.4817 19 14 4.7682 -6.2327 4.8099 20 1 5.9313 -5.4177 5.2437 21 1 4.5465 -7.3354 5.7794 22 1 5.0373 -6.8029 3.4654 23 7 3.2189 -1.1890 2.8588 24 7 3.0751 -0.3853 1.8647 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.0778 -2.5586 -0.7384 29 1 1.8993 -3.7201 -2.7473 30 1 3.3155 -2.5260 -4.3690 31 1 3.9032 -0.1659 -3.9880 32 1 0.5270 -2.2550 1.4813 33 1 1.7890 -2.7708 4.8232 34 1 1.1338 -3.7873 3.5171 35 1 2.2207 -6.2083 6.0709 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600976894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:04:02 Heat of formation + Delta-G solvation = 72.676799 kcal Electronic energy + Delta-G solvation = -20508.024847 eV Core-core repulsion = 17229.701933 eV Total energy + Delta-G solvation = -3278.322915 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.16763 -42.57668 -39.42858 -35.89082 -33.42683 -31.56921 -30.91668 -30.80803 -29.39466 -27.56259 -24.87037 -23.39185 -23.00328 -22.44490 -20.55860 -20.05050 -17.99349 -17.06591 -16.80207 -16.22514 -16.03433 -15.72634 -15.25876 -14.57188 -14.39003 -14.25640 -13.92286 -13.45708 -13.20316 -12.89509 -12.61223 -12.42718 -12.26475 -12.08708 -11.77017 -11.50855 -11.25767 -10.96628 -10.70294 -10.64636 -10.08790 -9.68717 -9.49859 -9.31731 -9.24025 -8.97020 -8.42165 -8.11350 -5.97840 -3.98269 0.76661 0.92475 2.23448 2.74762 3.36005 3.39103 3.41964 3.44623 3.54093 3.93703 4.12078 4.32181 4.52412 4.59594 4.64736 4.79564 4.97631 5.02338 5.11337 5.32328 5.39119 5.41124 5.53592 5.68946 5.75434 5.78040 5.85944 6.00272 6.09764 6.13052 6.35965 6.57190 7.14422 7.19457 7.53722 7.63690 7.99980 8.38828 9.04971 9.33936 9.64478 11.13246 Molecular weight = 275.11amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.004656 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.408036 B = 6012.356576 C = 6535.956223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.189 3.811 3 H 0.117 0.883 4 C -0.141 4.141 5 C -0.067 4.067 6 C -0.128 4.128 7 C -0.083 4.083 8 C -0.157 4.157 9 C 0.119 3.881 10 F -0.134 7.134 11 N -0.297 5.297 12 C -0.083 4.083 13 C 0.036 3.964 14 C 0.093 3.907 15 C -0.503 4.503 16 H 0.058 0.942 17 C 0.058 3.942 18 N -0.899 5.899 19 Si 0.896 3.104 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.278 1.278 23 N -0.261 5.261 24 N -0.106 5.106 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.179 0.821 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.615 8.672 -19.532 22.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.086 3.914 3 H 0.135 0.865 4 C -0.143 4.143 5 C -0.085 4.085 6 C -0.146 4.146 7 C -0.101 4.101 8 C -0.176 4.176 9 C 0.099 3.901 10 F -0.113 7.113 11 N -0.092 5.092 12 C -0.231 4.231 13 C -0.101 4.101 14 C 0.054 3.946 15 C -0.542 4.542 16 H 0.076 0.924 17 C -0.143 4.143 18 N -0.538 5.538 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.204 1.204 23 N -0.128 5.128 24 N -0.084 5.084 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.154 0.846 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.196 0.804 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.463 9.574 -19.264 21.970 hybrid contribution -0.016 -1.123 -0.145 1.132 sum -4.479 8.451 -19.409 21.638 Atomic orbital electron populations 1.22177 0.91112 1.04231 1.04057 1.20141 0.95807 0.96545 0.78859 0.86486 1.19908 1.01736 0.96101 0.96589 1.21022 0.97946 0.92554 0.97011 1.21257 0.98342 1.00663 0.94307 1.21101 0.96377 0.93342 0.99304 1.21139 1.02971 0.96060 0.97383 1.17474 0.97637 0.79155 0.95814 1.91505 1.90897 1.34116 1.94754 1.47265 1.18615 1.22615 1.20745 1.23213 1.04467 0.95638 0.99801 1.23020 0.90862 0.98415 0.97783 1.17719 0.97977 0.87633 0.91260 1.21001 0.99977 1.09434 1.23756 0.92392 1.24954 0.96310 0.97611 0.95424 1.69931 1.29328 1.28265 1.26310 0.86590 0.83506 0.79857 0.77700 1.20093 1.21302 1.20377 1.75083 1.21562 1.03860 1.12266 1.78243 1.04314 1.22359 1.03436 0.90531 0.89735 0.90738 0.84640 0.84789 0.84754 0.84444 0.80425 0.94318 0.94600 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.64 37.16 0.32 -1.10 16 2 C 0.19 2.38 3.46 -69.08 -0.24 2.14 16 3 H 0.12 1.46 7.13 -51.93 -0.37 1.09 16 4 C -0.14 -1.72 4.99 -104.56 -0.52 -2.24 16 5 C -0.07 -0.76 8.84 -39.59 -0.35 -1.11 16 6 C -0.13 -1.23 10.04 -39.58 -0.40 -1.63 16 7 C -0.08 -0.73 10.04 -39.59 -0.40 -1.12 16 8 C -0.16 -1.53 10.03 -39.51 -0.40 -1.93 16 9 C 0.12 1.41 7.25 -39.42 -0.29 1.13 16 10 F -0.13 -1.68 16.19 2.25 0.04 -1.64 16 11 N -0.30 -5.12 3.18 -55.89 -0.18 -5.30 16 12 C -0.08 -1.51 9.52 -17.05 -0.16 -1.67 16 13 C 0.04 0.84 6.44 -82.78 -0.53 0.31 16 14 C 0.09 2.43 5.55 -29.03 -0.16 2.27 16 15 C -0.50 -14.59 9.09 -34.44 -0.31 -14.90 16 16 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 19 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 N -0.26 -6.39 12.40 33.29 0.41 -5.98 16 24 N -0.11 -2.26 13.17 60.35 0.79 -1.47 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.62 6.42 -51.93 -0.33 0.29 16 28 H 0.14 1.46 6.57 -52.49 -0.34 1.11 16 29 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.18 2.53 7.10 -52.48 -0.37 2.15 16 33 H 0.04 1.08 8.14 -51.92 -0.42 0.66 16 34 H 0.04 0.92 8.12 -51.93 -0.42 0.50 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 308.40 15.07 4.65 4.65 Total: -1.00 -33.93 308.40 -6.02 -39.95 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -3.92 Total: -3.21 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -3.53 Total: -18.28 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 1.77 Total: -38.64 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.93 -6.02 -39.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600976894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.627 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds