Wall clock time and date at job start Mon Mar 30 2020 20:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47392 * 2 1 4 4 C 1.50697 * 109.47090 * 239.99709 * 2 1 3 5 5 C 1.38216 * 120.01502 * 299.98000 * 4 2 1 6 6 C 1.38226 * 120.02514 * 180.02562 * 5 4 2 7 7 C 1.38265 * 120.05353 * 0.02562 * 6 5 4 8 8 C 1.38177 * 120.02212 * 359.70277 * 7 6 5 9 9 C 1.38436 * 120.00925 * 119.99755 * 4 2 1 10 10 F 1.35104 * 120.02854 * 359.95937 * 9 4 2 11 11 N 1.46504 * 109.47361 * 119.99755 * 2 1 3 12 12 C 1.35313 * 125.86475 * 34.71625 * 11 2 1 13 13 C 1.35351 * 106.17348 * 179.90783 * 12 11 2 14 14 C 1.50701 * 126.74874 * 180.12863 * 13 12 11 15 15 C 1.50703 * 109.47226 * 125.24476 * 14 13 12 16 16 H 1.07995 * 119.99655 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99804 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00480 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99801 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46996 * 59.99648 * 19 17 15 21 21 H 1.48492 * 109.47124 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46876 * 299.99896 * 19 17 15 23 23 N 1.33767 * 106.49723 * 0.34816 * 13 12 11 24 24 N 1.28634 * 108.88642 * 359.77873 * 23 13 12 25 25 H 1.09003 * 109.47028 * 300.00277 * 1 2 3 26 26 H 1.08995 * 109.47383 * 59.99834 * 1 2 3 27 27 H 1.09003 * 109.46935 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.98614 * 0.03902 * 5 4 2 29 29 H 1.08001 * 119.97063 * 179.97438 * 6 5 4 30 30 H 1.07994 * 119.98907 * 179.97438 * 7 6 5 31 31 H 1.07999 * 120.01627 * 180.27269 * 8 7 6 32 32 H 1.08004 * 126.91348 * 0.02562 * 12 11 2 33 33 H 1.09009 * 109.46777 * 245.23912 * 14 13 12 34 34 H 1.08997 * 109.47354 * 5.23727 * 14 13 12 35 35 H 0.96997 * 120.00451 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.6990 -2.0339 -1.4492 6 6 2.1600 -2.6859 -2.5774 7 6 2.9556 -2.0154 -3.4881 8 6 3.2855 -0.6908 -3.2743 9 6 2.8282 -0.0379 -2.1418 10 9 3.1543 1.2559 -1.9293 11 7 2.0184 -0.6906 1.1962 12 6 1.4329 -1.7553 1.7915 13 6 2.2123 -2.0699 2.8525 14 6 1.9873 -3.1891 3.8363 15 6 3.2162 -4.0592 3.8971 16 1 4.0742 -3.8254 3.2843 17 6 3.2451 -5.1537 4.7350 18 7 2.2005 -5.4381 5.4817 19 14 4.7682 -6.2327 4.8099 20 1 5.9313 -5.4177 5.2437 21 1 4.5465 -7.3354 5.7794 22 1 5.0373 -6.8029 3.4654 23 7 3.2189 -1.1890 2.8588 24 7 3.0751 -0.3853 1.8647 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.0778 -2.5586 -0.7384 29 1 1.8993 -3.7201 -2.7473 30 1 3.3155 -2.5260 -4.3690 31 1 3.9032 -0.1659 -3.9880 32 1 0.5270 -2.2550 1.4813 33 1 1.7890 -2.7708 4.8232 34 1 1.1338 -3.7873 3.5171 35 1 2.2207 -6.2083 6.0709 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600976894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:04:02 Heat of formation + Delta-G solvation = 51.854822 kcal Electronic energy + Delta-G solvation = -20508.927756 eV Core-core repulsion = 17229.701933 eV Total energy + Delta-G solvation = -3279.225823 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.06536 -44.13916 -40.25995 -37.02060 -35.45008 -33.22780 -32.37385 -31.59575 -30.27696 -29.47600 -25.96538 -25.32824 -23.97613 -23.46560 -22.11194 -21.38464 -18.89994 -18.47074 -18.15979 -17.72580 -17.13840 -16.69927 -16.55117 -16.37759 -15.60205 -15.25953 -14.90629 -14.57813 -14.41167 -14.24965 -13.89603 -13.81180 -13.47678 -13.16124 -13.08210 -12.82914 -12.64866 -12.50350 -12.31398 -12.12486 -11.88741 -11.68367 -11.38853 -10.92404 -10.57718 -10.09842 -9.88097 -9.77576 -8.17839 -6.26271 -0.05892 0.14480 0.74258 1.40314 1.43817 1.50974 1.53726 1.76128 2.44999 2.56046 3.11335 3.15003 3.20830 3.40184 3.68486 3.80239 3.85988 4.06936 4.19284 4.29623 4.32229 4.41988 4.59141 4.63704 4.76878 4.81062 4.96449 5.03466 5.09900 5.24227 5.30756 5.37852 5.44468 5.55373 5.77503 5.78870 5.82447 6.23578 6.81259 7.40186 7.70102 8.92861 Molecular weight = 275.11amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.004656 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.408036 B = 6012.356576 C = 6535.956223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 H 0.114 0.886 4 C -0.156 4.156 5 C -0.082 4.082 6 C -0.130 4.130 7 C -0.077 4.077 8 C -0.158 4.158 9 C 0.096 3.904 10 F -0.145 7.145 11 N -0.277 5.277 12 C -0.045 4.045 13 C -0.005 4.005 14 C 0.104 3.896 15 C -0.524 4.524 16 H 0.042 0.958 17 C 0.012 3.988 18 N -0.925 5.925 19 Si 0.959 3.041 20 H -0.278 1.278 21 H -0.275 1.275 22 H -0.268 1.268 23 N -0.307 5.307 24 N -0.126 5.126 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.086 0.914 28 H 0.139 0.861 29 H 0.156 0.844 30 H 0.168 0.832 31 H 0.158 0.842 32 H 0.222 0.778 33 H 0.008 0.992 34 H 0.037 0.963 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.117 7.798 -22.024 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.079 3.921 3 H 0.132 0.868 4 C -0.158 4.158 5 C -0.101 4.101 6 C -0.148 4.148 7 C -0.095 4.095 8 C -0.176 4.176 9 C 0.076 3.924 10 F -0.124 7.124 11 N -0.072 5.072 12 C -0.195 4.195 13 C -0.143 4.143 14 C 0.065 3.935 15 C -0.562 4.562 16 H 0.060 0.940 17 C -0.187 4.187 18 N -0.565 5.565 19 Si 0.783 3.217 20 H -0.204 1.204 21 H -0.199 1.199 22 H -0.193 1.193 23 N -0.174 5.174 24 N -0.104 5.104 25 H 0.095 0.905 26 H 0.129 0.871 27 H 0.105 0.895 28 H 0.157 0.843 29 H 0.174 0.826 30 H 0.185 0.815 31 H 0.175 0.825 32 H 0.239 0.761 33 H 0.026 0.974 34 H 0.055 0.945 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.963 8.734 -21.782 23.987 hybrid contribution 0.094 -0.798 0.485 0.939 sum -4.870 7.936 -21.297 23.244 Atomic orbital electron populations 1.22236 0.88001 1.05456 1.05348 1.20630 0.98185 0.95974 0.77304 0.86810 1.19883 1.02816 0.96717 0.96426 1.21199 0.98572 0.92299 0.97997 1.21610 0.97768 1.01701 0.93686 1.21522 0.95152 0.92846 0.99941 1.21475 1.02606 0.96646 0.96917 1.17792 0.98523 0.79088 0.97002 1.91475 1.91101 1.34840 1.94935 1.47669 1.16924 1.21738 1.20879 1.23576 1.04147 0.94486 0.97311 1.22702 0.92858 0.99030 0.99728 1.17388 0.97021 0.88285 0.90796 1.21217 1.00521 1.10461 1.24038 0.94008 1.25737 0.99303 0.98774 0.94845 1.70020 1.31010 1.28843 1.26661 0.85604 0.79529 0.78195 0.78327 1.20377 1.19939 1.19290 1.74989 1.23132 1.05098 1.14132 1.78127 1.06149 1.22466 1.03658 0.90536 0.87134 0.89517 0.84298 0.82627 0.81485 0.82458 0.76127 0.97421 0.94471 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.64 71.98 0.62 -1.73 16 2 C 0.18 4.27 3.46 44.24 0.15 4.43 16 3 H 0.11 2.78 7.13 -2.39 -0.02 2.76 16 4 C -0.16 -3.55 4.99 -19.82 -0.10 -3.65 16 5 C -0.08 -1.67 8.84 22.26 0.20 -1.47 16 6 C -0.13 -2.10 10.04 22.27 0.22 -1.88 16 7 C -0.08 -1.08 10.04 22.26 0.22 -0.86 16 8 C -0.16 -2.70 10.03 22.31 0.22 -2.47 16 9 C 0.10 2.15 7.25 22.38 0.16 2.31 16 10 F -0.14 -3.56 16.19 44.97 0.73 -2.84 16 11 N -0.28 -9.35 3.18 -330.72 -1.05 -10.40 16 12 C -0.05 -1.59 9.52 83.49 0.79 -0.80 16 13 C 0.00 -0.23 6.44 41.60 0.27 0.04 16 14 C 0.10 5.62 5.55 29.10 0.16 5.78 16 15 C -0.52 -31.12 9.09 25.60 0.23 -30.89 16 16 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 17 C 0.01 0.69 5.46 84.65 0.46 1.15 16 18 N -0.93 -55.30 13.29 21.45 0.28 -55.01 16 19 Si 0.96 45.64 29.54 68.60 2.03 47.67 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 23 N -0.31 -15.55 12.40 -48.60 -0.60 -16.15 16 24 N -0.13 -5.49 13.17 37.02 0.49 -5.00 16 25 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.09 1.14 6.42 -2.39 -0.02 1.13 16 28 H 0.14 2.62 6.57 -2.91 -0.02 2.60 16 29 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 30 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 31 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.22 5.61 7.10 -2.91 -0.02 5.59 16 33 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.04 1.95 8.12 -2.39 -0.02 1.93 16 35 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -75.82 308.40 6.61 -69.22 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: 1.11 Total: 2.57 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: 3.62 Total: -30.05 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -0.88 Total: -86.57 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.73 Total: -2.84 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -75.82 6.61 -69.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600976894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.074 kcal (2) G-P(sol) polarization free energy of solvation -75.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds