Wall clock time and date at job start Mon Mar 30 2020 20:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38029 * 119.94623 * 2 1 4 4 C 1.38096 * 120.33064 * 179.69423 * 3 2 1 5 5 C 1.50693 * 119.89971 * 180.27566 * 4 3 2 6 6 C 1.39744 * 120.19772 * 0.56377 * 4 3 2 7 7 C 1.47865 * 120.05688 * 179.71226 * 6 4 3 8 8 O 1.21559 * 120.00104 * 353.45825 * 7 6 4 9 9 N 1.34774 * 119.99922 * 173.45222 * 7 6 4 10 10 C 1.46503 * 120.00115 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47180 * 325.00282 * 10 9 7 12 12 C 1.53011 * 109.46856 * 85.00073 * 10 9 7 13 13 C 1.50700 * 109.47403 * 204.99702 * 10 9 7 14 14 H 1.08002 * 119.99607 * 0.02562 * 13 10 9 15 15 C 1.37873 * 119.99944 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99649 * 180.02562 * 15 13 10 17 17 Si 1.86793 * 120.00332 * 0.02562 * 15 13 10 18 18 H 1.48497 * 109.47257 * 89.99531 * 17 15 13 19 19 H 1.48495 * 109.47386 * 210.00103 * 17 15 13 20 20 H 1.48507 * 109.47272 * 330.00073 * 17 15 13 21 21 C 1.39230 * 119.88187 * 359.43994 * 6 4 3 22 22 C 1.39615 * 119.67751 * 0.27650 * 21 6 4 23 23 C 1.47189 * 120.10289 * 179.97438 * 22 21 6 24 24 O 1.21257 * 119.99219 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.47325 * 270.01782 * 1 2 3 26 26 H 1.08995 * 109.47260 * 30.01934 * 1 2 3 27 27 H 1.09006 * 109.47010 * 150.02047 * 1 2 3 28 28 H 1.08005 * 119.82644 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.47741 * 263.65088 * 5 4 3 30 30 H 1.09000 * 109.47339 * 23.65470 * 5 4 3 31 31 H 1.09000 * 109.47049 * 143.64821 * 5 4 3 32 32 H 0.96997 * 119.99848 * 0.02562 * 9 7 6 33 33 H 1.08994 * 109.47055 * 60.00133 * 12 10 9 34 34 H 1.08996 * 109.46750 * 300.00155 * 12 10 9 35 35 H 1.09000 * 109.46443 * 180.02562 * 12 10 9 36 36 H 0.97002 * 119.99750 * 180.02562 * 16 15 13 37 37 H 1.07997 * 120.15931 * 180.30313 * 21 6 4 38 38 H 1.07993 * 120.00163 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1960 0.0000 4 6 3.5769 1.2053 0.0064 5 6 4.3193 2.5167 0.0126 6 6 4.2879 0.0023 0.0010 7 6 5.7665 0.0159 0.0014 8 8 6.3647 1.0678 -0.1136 9 7 6.4510 -1.1381 0.1293 10 6 7.9159 -1.1246 0.1303 11 1 8.2726 -0.3489 -0.5473 12 6 8.4223 -0.8380 1.5454 13 6 8.4310 -2.4655 -0.3255 14 1 7.7365 -3.2492 -0.5899 15 6 9.7887 -2.6913 -0.4060 16 7 10.2382 -3.8614 -0.8043 17 14 10.9898 -1.3356 0.0506 18 1 11.3118 -1.4261 1.4975 19 1 12.2348 -1.4888 -0.7441 20 1 10.3777 -0.0138 -0.2384 21 6 3.6016 -1.2091 0.0009 22 6 2.2055 -1.2126 0.0005 23 6 1.4704 -2.4879 -0.0001 24 8 2.0776 -3.5375 -0.0007 25 1 -0.3634 0.0003 1.0276 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6522 2.1292 0.0004 29 1 4.6019 2.7791 -1.0069 30 1 3.6772 3.2957 0.4236 31 1 5.2157 2.4238 0.6257 32 1 5.9736 -1.9775 0.2207 33 1 8.0657 -1.6137 2.2230 34 1 8.0498 0.1318 1.8751 35 1 9.5123 -0.8275 1.5460 36 1 11.1934 -4.0204 -0.8605 37 1 4.1466 -2.1415 0.0017 38 1 0.3905 -2.4887 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793281969.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:07:17 Heat of formation + Delta-G solvation = -46.537489 kcal Electronic energy + Delta-G solvation = -20868.402475 eV Core-core repulsion = 17676.077594 eV Total energy + Delta-G solvation = -3192.324880 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47681 -39.08349 -37.92590 -35.19968 -33.61384 -32.85891 -31.92144 -29.91172 -27.87465 -27.52051 -25.18869 -23.97876 -22.49721 -21.78971 -20.05020 -19.64082 -18.03358 -16.70599 -16.30940 -15.52636 -15.34685 -15.12599 -14.90049 -14.50380 -14.33138 -14.09867 -13.84810 -13.65014 -13.14284 -13.07700 -12.82879 -12.71649 -12.20718 -12.08612 -11.88032 -11.65717 -11.60087 -11.44098 -11.26793 -10.80271 -10.18661 -9.92667 -9.66952 -9.23603 -9.07784 -8.98157 -8.82505 -8.73255 -8.15569 -6.19641 -4.22557 0.45753 0.95203 2.22092 3.18379 3.23969 3.35699 3.39656 3.82377 3.91523 4.05038 4.32147 4.44119 4.56036 4.70181 5.00485 5.08420 5.14666 5.15360 5.24097 5.38837 5.42789 5.64262 5.67045 5.80836 5.87564 6.07319 6.13029 6.21608 6.31012 6.34815 6.52584 6.56393 6.71061 6.84919 7.18245 7.26361 7.27569 7.50369 8.12917 8.50111 8.75537 8.86945 9.40326 10.92579 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.022949 B = 0.004852 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.814297 B = 5769.196780 C = 6801.452562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.015 4.015 3 C -0.150 4.150 4 C 0.012 3.988 5 C -0.126 4.126 6 C -0.149 4.149 7 C 0.546 3.454 8 O -0.546 6.546 9 N -0.694 5.694 10 C 0.237 3.763 11 H 0.051 0.949 12 C -0.161 4.161 13 C -0.536 4.536 14 H 0.081 0.919 15 C 0.079 3.921 16 N -0.891 5.891 17 Si 0.886 3.114 18 H -0.276 1.276 19 H -0.294 1.294 20 H -0.262 1.262 21 C -0.017 4.017 22 C -0.213 4.213 23 C 0.379 3.621 24 O -0.455 6.455 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.132 0.868 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.395 0.605 33 H 0.053 0.947 34 H 0.036 0.964 35 H 0.048 0.952 36 H 0.267 0.733 37 H 0.140 0.860 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.201 9.583 2.901 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.016 4.016 3 C -0.168 4.168 4 C 0.011 3.989 5 C -0.182 4.182 6 C -0.152 4.152 7 C 0.332 3.668 8 O -0.427 6.427 9 N -0.342 5.342 10 C 0.133 3.867 11 H 0.069 0.931 12 C -0.219 4.219 13 C -0.574 4.574 14 H 0.099 0.901 15 C -0.125 4.125 16 N -0.528 5.528 17 Si 0.716 3.284 18 H -0.203 1.203 19 H -0.221 1.221 20 H -0.186 1.186 21 C -0.036 4.036 22 C -0.214 4.214 23 C 0.238 3.762 24 O -0.328 6.328 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.150 0.850 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.230 0.770 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.158 0.842 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.233 9.605 2.774 21.676 hybrid contribution 0.500 0.210 0.277 0.609 sum -18.733 9.814 3.052 21.367 Atomic orbital electron populations 1.20983 0.90554 1.03612 1.03169 1.20234 0.96052 0.92117 0.93176 1.20874 0.93185 0.97760 1.04967 1.20326 0.93271 0.95289 0.90061 1.21179 1.01157 0.91636 1.04187 1.20056 0.94361 0.93341 1.07423 1.18147 0.86218 0.84761 0.77681 1.90668 1.70324 1.30371 1.51333 1.46200 1.09205 1.07908 1.70861 1.19148 0.75330 0.98906 0.93271 0.93145 1.22453 1.00043 0.99542 0.99878 1.21040 0.93103 0.96872 1.46414 0.90150 1.24827 0.98027 0.95487 0.94156 1.69874 1.14521 1.22148 1.46274 0.86866 0.80374 0.83166 0.78019 1.20292 1.22134 1.18648 1.21680 0.93389 0.97997 0.90572 1.20607 0.94352 0.95589 1.10811 1.24058 0.94924 0.86630 0.70633 1.90569 1.73354 1.34469 1.34365 0.90103 0.90638 0.90818 0.84973 0.90175 0.92524 0.87954 0.77027 0.92772 0.94502 0.93353 0.92269 0.84202 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.68 9.51 36.00 0.34 -0.34 16 2 C -0.02 -0.14 5.93 -104.06 -0.62 -0.76 16 3 C -0.15 -1.54 9.29 -39.71 -0.37 -1.91 16 4 C 0.01 0.16 5.92 -104.11 -0.62 -0.46 16 5 C -0.13 -1.63 8.71 36.00 0.31 -1.31 16 6 C -0.15 -2.34 5.87 -105.03 -0.62 -2.96 16 7 C 0.55 10.64 7.66 -12.32 -0.09 10.55 16 8 O -0.55 -11.82 12.99 5.31 0.07 -11.75 16 9 N -0.69 -14.41 5.02 -55.87 -0.28 -14.69 16 10 C 0.24 5.74 2.15 -69.07 -0.15 5.60 16 11 H 0.05 1.33 6.63 -51.93 -0.34 0.99 16 12 C -0.16 -3.64 8.96 37.16 0.33 -3.31 16 13 C -0.54 -14.80 9.31 -34.44 -0.32 -15.12 16 14 H 0.08 2.35 7.98 -52.49 -0.42 1.93 16 15 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 16 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 17 Si 0.89 21.92 24.37 -169.99 -4.14 17.77 16 18 H -0.28 -6.60 6.87 56.52 0.39 -6.22 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 21 C -0.02 -0.25 9.07 -38.70 -0.35 -0.60 16 22 C -0.21 -2.48 5.86 -105.11 -0.62 -3.09 16 23 C 0.38 4.01 10.88 34.37 0.37 4.38 16 24 O -0.45 -6.79 17.16 5.58 0.10 -6.69 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 27 H 0.07 0.30 6.31 -51.93 -0.33 -0.03 16 28 H 0.13 0.99 8.05 -52.48 -0.42 0.57 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.56 8.04 -51.93 -0.42 0.14 16 31 H 0.10 1.60 5.85 -51.93 -0.30 1.29 16 32 H 0.40 7.52 6.61 -40.82 -0.27 7.25 16 33 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.14 2.10 6.03 -52.49 -0.32 1.78 16 38 H 0.10 0.63 6.34 -52.49 -0.33 0.29 16 LS Contribution 312.64 15.07 4.71 4.71 Total: -1.00 -33.11 312.64 -5.87 -38.98 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -4.61 Total: 4.84 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -2.48 Total: -7.19 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.49 Total: -40.67 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.16 Total: -18.44 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.14 Total: 17.77 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.11 -5.87 -38.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793281969.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.560 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds