Wall clock time and date at job start Mon Mar 30 2020 20:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38029 * 119.94623 * 2 1 4 4 C 1.38096 * 120.33064 * 179.69423 * 3 2 1 5 5 C 1.50693 * 119.89971 * 180.27566 * 4 3 2 6 6 C 1.39744 * 120.19772 * 0.56377 * 4 3 2 7 7 C 1.47865 * 120.05688 * 179.71226 * 6 4 3 8 8 O 1.21559 * 120.00104 * 353.45825 * 7 6 4 9 9 N 1.34774 * 119.99922 * 173.45222 * 7 6 4 10 10 C 1.46503 * 120.00115 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47180 * 325.00282 * 10 9 7 12 12 C 1.53011 * 109.46856 * 85.00073 * 10 9 7 13 13 C 1.50700 * 109.47403 * 204.99702 * 10 9 7 14 14 H 1.08002 * 119.99607 * 0.02562 * 13 10 9 15 15 C 1.37873 * 119.99944 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99649 * 180.02562 * 15 13 10 17 17 Si 1.86793 * 120.00332 * 0.02562 * 15 13 10 18 18 H 1.48497 * 109.47257 * 89.99531 * 17 15 13 19 19 H 1.48495 * 109.47386 * 210.00103 * 17 15 13 20 20 H 1.48507 * 109.47272 * 330.00073 * 17 15 13 21 21 C 1.39230 * 119.88187 * 359.43994 * 6 4 3 22 22 C 1.39615 * 119.67751 * 0.27650 * 21 6 4 23 23 C 1.47189 * 120.10289 * 179.97438 * 22 21 6 24 24 O 1.21257 * 119.99219 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.47325 * 270.01782 * 1 2 3 26 26 H 1.08995 * 109.47260 * 30.01934 * 1 2 3 27 27 H 1.09006 * 109.47010 * 150.02047 * 1 2 3 28 28 H 1.08005 * 119.82644 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.47741 * 263.65088 * 5 4 3 30 30 H 1.09000 * 109.47339 * 23.65470 * 5 4 3 31 31 H 1.09000 * 109.47049 * 143.64821 * 5 4 3 32 32 H 0.96997 * 119.99848 * 0.02562 * 9 7 6 33 33 H 1.08994 * 109.47055 * 60.00133 * 12 10 9 34 34 H 1.08996 * 109.46750 * 300.00155 * 12 10 9 35 35 H 1.09000 * 109.46443 * 180.02562 * 12 10 9 36 36 H 0.97002 * 119.99750 * 180.02562 * 16 15 13 37 37 H 1.07997 * 120.15931 * 180.30313 * 21 6 4 38 38 H 1.07993 * 120.00163 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1960 0.0000 4 6 3.5769 1.2053 0.0064 5 6 4.3193 2.5167 0.0126 6 6 4.2879 0.0023 0.0010 7 6 5.7665 0.0159 0.0014 8 8 6.3647 1.0678 -0.1136 9 7 6.4510 -1.1381 0.1293 10 6 7.9159 -1.1246 0.1303 11 1 8.2726 -0.3489 -0.5473 12 6 8.4223 -0.8380 1.5454 13 6 8.4310 -2.4655 -0.3255 14 1 7.7365 -3.2492 -0.5899 15 6 9.7887 -2.6913 -0.4060 16 7 10.2382 -3.8614 -0.8043 17 14 10.9898 -1.3356 0.0506 18 1 11.3118 -1.4261 1.4975 19 1 12.2348 -1.4888 -0.7441 20 1 10.3777 -0.0138 -0.2384 21 6 3.6016 -1.2091 0.0009 22 6 2.2055 -1.2126 0.0005 23 6 1.4704 -2.4879 -0.0001 24 8 2.0776 -3.5375 -0.0007 25 1 -0.3634 0.0003 1.0276 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6522 2.1292 0.0004 29 1 4.6019 2.7791 -1.0069 30 1 3.6772 3.2957 0.4236 31 1 5.2157 2.4238 0.6257 32 1 5.9736 -1.9775 0.2207 33 1 8.0657 -1.6137 2.2230 34 1 8.0498 0.1318 1.8751 35 1 9.5123 -0.8275 1.5460 36 1 11.1934 -4.0204 -0.8605 37 1 4.1466 -2.1415 0.0017 38 1 0.3905 -2.4887 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793281969.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:07:16 Heat of formation + Delta-G solvation = -69.732572 kcal Electronic energy + Delta-G solvation = -20869.408289 eV Core-core repulsion = 17676.077594 eV Total energy + Delta-G solvation = -3193.330694 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60881 -40.32722 -39.04581 -36.97915 -34.63691 -34.54591 -33.33533 -31.55564 -28.84001 -28.36139 -27.27581 -25.02599 -23.79602 -22.93197 -21.51541 -20.99661 -19.44734 -18.31736 -17.72002 -17.01968 -16.83836 -16.21306 -16.03169 -15.76407 -15.52798 -15.44378 -15.00659 -14.85266 -14.52136 -14.42094 -14.17204 -13.91622 -13.72253 -13.24663 -13.19543 -12.88900 -12.79235 -12.70523 -12.49971 -12.40323 -12.17257 -11.61739 -11.34572 -10.91133 -10.87272 -10.50393 -10.05800 -9.91315 -9.65915 -8.41914 -6.49434 -0.46440 -0.08302 1.25148 1.31492 1.32805 1.43140 1.96636 2.23104 2.32509 2.77140 2.93874 3.23727 3.61076 3.68870 3.79093 4.00105 4.14012 4.35001 4.38427 4.50779 4.60368 4.63078 4.66837 4.71948 4.81258 4.86217 4.93494 4.93909 5.11126 5.14414 5.27552 5.33285 5.36187 5.38775 5.50467 5.60568 5.81830 6.07954 6.46783 6.50851 6.74535 7.12276 7.30054 8.73815 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.022949 B = 0.004852 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.814297 B = 5769.196780 C = 6801.452562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.010 3.990 3 C -0.143 4.143 4 C 0.003 3.997 5 C -0.121 4.121 6 C -0.178 4.178 7 C 0.543 3.457 8 O -0.573 6.573 9 N -0.701 5.701 10 C 0.243 3.757 11 H 0.028 0.972 12 C -0.154 4.154 13 C -0.540 4.540 14 H 0.049 0.951 15 C 0.029 3.971 16 N -0.934 5.934 17 Si 0.945 3.055 18 H -0.257 1.257 19 H -0.289 1.289 20 H -0.260 1.260 21 C -0.033 4.033 22 C -0.224 4.224 23 C 0.389 3.611 24 O -0.507 6.507 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.172 0.828 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.400 0.600 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.272 0.728 37 H 0.119 0.881 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.643 11.687 3.708 26.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.010 3.990 3 C -0.160 4.160 4 C 0.001 3.999 5 C -0.177 4.177 6 C -0.181 4.181 7 C 0.332 3.668 8 O -0.455 6.455 9 N -0.350 5.350 10 C 0.138 3.862 11 H 0.046 0.954 12 C -0.212 4.212 13 C -0.578 4.578 14 H 0.067 0.933 15 C -0.171 4.171 16 N -0.572 5.572 17 Si 0.771 3.229 18 H -0.183 1.183 19 H -0.216 1.216 20 H -0.184 1.184 21 C -0.053 4.053 22 C -0.225 4.225 23 C 0.251 3.749 24 O -0.382 6.382 25 H 0.121 0.879 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.189 0.811 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.236 0.764 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.137 0.863 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -22.714 11.720 3.590 25.810 hybrid contribution 1.372 -0.439 -0.020 1.441 sum -21.341 11.281 3.570 24.402 Atomic orbital electron populations 1.21186 0.86590 1.05633 1.05054 1.20750 0.98561 0.90528 0.89182 1.21296 0.91661 0.99836 1.03226 1.20523 0.94873 0.94194 0.90262 1.21092 1.00663 0.92745 1.03247 1.19770 0.91738 0.95160 1.11411 1.18768 0.88087 0.83633 0.76315 1.90647 1.71489 1.30990 1.52407 1.46084 1.07927 1.09010 1.71943 1.18817 0.77527 0.96047 0.93807 0.95378 1.22333 0.99728 1.00485 0.98625 1.21237 0.92934 0.97578 1.46044 0.93288 1.25615 0.99824 0.97618 0.94074 1.69991 1.15209 1.24204 1.47839 0.85917 0.78034 0.80175 0.78768 1.18285 1.21632 1.18437 1.21623 0.95134 0.96695 0.91805 1.20940 0.93177 0.97675 1.10731 1.24858 0.96956 0.84993 0.68124 1.90575 1.74684 1.36069 1.36903 0.87908 0.88601 0.88979 0.81071 0.91041 0.88865 0.91152 0.76432 0.92026 0.93242 0.93648 0.91905 0.86305 0.81948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.54 9.51 71.23 0.68 0.13 16 2 C 0.01 0.15 5.93 -19.50 -0.12 0.04 16 3 C -0.14 -2.36 9.29 22.19 0.21 -2.15 16 4 C 0.00 0.07 5.92 -19.54 -0.12 -0.05 16 5 C -0.12 -3.03 8.71 71.23 0.62 -2.41 16 6 C -0.18 -5.73 5.87 -20.13 -0.12 -5.85 16 7 C 0.54 22.21 7.66 86.79 0.66 22.88 16 8 O -0.57 -25.84 12.99 -3.90 -0.05 -25.89 16 9 N -0.70 -30.80 5.02 -448.94 -2.25 -33.06 16 10 C 0.24 12.21 2.15 44.25 0.10 12.31 16 11 H 0.03 1.55 6.63 -2.39 -0.02 1.53 16 12 C -0.15 -6.99 8.96 71.99 0.65 -6.34 16 13 C -0.54 -31.15 9.31 25.60 0.24 -30.92 16 14 H 0.05 3.06 7.98 -2.91 -0.02 3.03 16 15 C 0.03 1.67 5.45 84.65 0.46 2.13 16 16 N -0.93 -57.81 13.96 21.45 0.30 -57.51 16 17 Si 0.94 45.77 24.37 68.60 1.67 47.44 16 18 H -0.26 -11.65 6.87 99.48 0.68 -10.96 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 20 H -0.26 -12.43 6.53 99.48 0.65 -11.78 16 21 C -0.03 -0.99 9.07 22.84 0.21 -0.78 16 22 C -0.22 -4.77 5.86 -20.18 -0.12 -4.89 16 23 C 0.39 7.25 10.88 70.17 0.76 8.02 16 24 O -0.51 -15.00 17.16 -2.96 -0.05 -15.05 16 25 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 26 H 0.10 0.15 8.08 -2.39 -0.02 0.13 16 27 H 0.09 0.12 6.31 -2.38 -0.02 0.11 16 28 H 0.17 1.52 8.05 -2.91 -0.02 1.50 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 30 H 0.09 1.57 8.04 -2.39 -0.02 1.55 16 31 H 0.07 2.24 5.85 -2.39 -0.01 2.22 16 32 H 0.40 16.52 6.61 -92.71 -0.61 15.91 16 33 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.05 2.07 3.27 -2.39 -0.01 2.06 16 36 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 37 H 0.12 3.89 6.03 -2.91 -0.02 3.88 16 38 H 0.16 1.10 6.34 -2.91 -0.02 1.08 16 Total: -1.00 -77.23 312.64 4.13 -73.09 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.41 Total: 18.86 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 4.11 Total: -7.89 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -1.95 Total: -90.57 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -0.10 Total: -40.94 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.67 Total: 47.44 kcal Total: -77.23 4.13 -73.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793281969.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.361 kcal (2) G-P(sol) polarization free energy of solvation -77.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds