Wall clock time and date at job start Mon Mar 30 2020 20:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42891 * 112.84725 * 2 1 4 4 C 1.53954 * 113.66446 * 228.75728 * 2 1 3 5 5 C 1.53785 * 87.01788 * 220.06681 * 4 2 1 6 6 H 1.09000 * 113.61127 * 270.77095 * 5 4 2 7 7 C 1.50702 * 113.61289 * 139.95424 * 5 4 2 8 8 O 1.21293 * 119.99734 * 260.86321 * 7 5 4 9 9 N 1.34770 * 119.99942 * 80.86540 * 7 5 4 10 10 C 1.39939 * 119.99825 * 175.47739 * 9 7 5 11 11 C 1.39293 * 119.94778 * 215.61744 * 10 9 7 12 12 C 1.38485 * 120.43163 * 179.72620 * 11 10 9 13 13 C 1.37688 * 120.31751 * 0.26981 * 12 11 10 14 14 C 1.40739 * 119.88680 * 0.02562 * 13 12 11 15 15 C 1.41410 * 120.20857 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99803 * 204.62147 * 15 14 13 17 17 C 1.39940 * 119.99918 * 24.62131 * 15 14 13 18 18 N 1.30826 * 119.99945 * 15.38673 * 17 15 14 19 19 Si 1.86799 * 119.99810 * 195.38294 * 17 15 14 20 20 H 1.48499 * 109.47153 * 90.00077 * 19 17 15 21 21 H 1.48501 * 109.46908 * 210.00257 * 19 17 15 22 22 H 1.48505 * 109.47327 * 329.99994 * 19 17 15 23 23 C 1.38236 * 119.95050 * 35.89418 * 10 9 7 24 24 C 1.53780 * 113.61140 * 131.19819 * 2 1 3 25 25 H 1.09004 * 109.47331 * 288.80046 * 1 2 3 26 26 H 1.08995 * 109.47305 * 48.80523 * 1 2 3 27 27 H 1.08999 * 109.47342 * 168.80481 * 1 2 3 28 28 H 0.96703 * 114.00323 * 311.19799 * 3 2 1 29 29 H 1.09002 * 113.66495 * 105.54250 * 4 2 1 30 30 H 1.09002 * 113.61889 * 334.58807 * 4 2 1 31 31 H 0.97001 * 120.00246 * 355.47378 * 9 7 5 32 32 H 1.07999 * 119.78597 * 359.97438 * 11 10 9 33 33 H 1.08000 * 119.84337 * 180.25477 * 12 11 10 34 34 H 1.08003 * 120.05534 * 179.97438 * 13 12 11 35 35 H 0.96996 * 120.00229 * 180.02562 * 18 17 15 36 36 H 1.08007 * 120.16176 * 359.97438 * 23 10 9 37 37 H 1.08993 * 113.61806 * 25.43080 * 24 2 1 38 38 H 1.08997 * 113.68599 * 254.53833 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0848 1.3168 0.0000 4 6 2.1480 -0.9296 -1.0603 5 6 3.1923 -1.3136 0.0012 6 1 4.0717 -0.6695 0.0015 7 6 3.5407 -2.7798 0.0026 8 8 3.0278 -3.5242 0.8112 9 7 4.4222 -3.2637 -0.8947 10 6 4.8177 -4.6047 -0.8338 11 6 6.1256 -4.9593 -1.1561 12 6 6.5292 -6.2825 -1.0939 13 6 5.6395 -7.2636 -0.7176 14 6 4.3130 -6.9212 -0.3950 15 6 3.3937 -7.9232 -0.0072 16 1 2.3339 -7.7650 -0.1419 17 6 3.8572 -9.1198 0.5510 18 7 5.0861 -9.2031 0.9920 19 14 2.7212 -10.5982 0.6665 20 1 2.8451 -11.4152 -0.5673 21 1 3.0971 -11.4204 1.8446 22 1 1.3183 -10.1341 0.8141 23 6 3.9082 -5.5761 -0.4595 24 6 2.1459 -0.9281 1.0602 25 1 -0.3634 0.3312 0.9729 26 1 -0.3633 0.6768 -0.7732 27 1 -0.3634 -1.0081 -0.1995 28 1 1.7013 1.9052 -0.6647 29 1 2.5686 -0.3998 -1.9150 30 1 1.4970 -1.7542 -1.3508 31 1 4.7825 -2.6826 -1.5827 32 1 6.8306 -4.1968 -1.4527 33 1 7.5467 -6.5463 -1.3419 34 1 5.9587 -8.2944 -0.6709 35 1 5.4075 -10.0326 1.3786 36 1 2.8927 -5.3028 -0.2133 37 1 1.4945 -1.7522 1.3506 38 1 2.5652 -0.3983 1.9156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185470708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:08:32 Heat of formation + Delta-G solvation = -48.467281 kcal Electronic energy + Delta-G solvation = -20676.074503 eV Core-core repulsion = 17483.665941 eV Total energy + Delta-G solvation = -3192.408562 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.53205 -38.78344 -37.01347 -34.72973 -34.35789 -32.96660 -30.00417 -29.78562 -28.14205 -25.90378 -25.27784 -24.40783 -21.34947 -20.76968 -19.98757 -19.25491 -17.66742 -16.90079 -16.48577 -15.67631 -15.47684 -15.18856 -14.63764 -14.41428 -14.31719 -13.83471 -13.28657 -13.04054 -12.86723 -12.83068 -12.21537 -12.17913 -11.88309 -11.62581 -11.47466 -11.29110 -11.14005 -11.09634 -10.61609 -10.46241 -10.40550 -10.11398 -9.96019 -9.70378 -9.37280 -9.04092 -8.75048 -7.41361 -6.87463 -6.67500 -4.30844 2.65580 2.86899 3.11010 3.15457 3.22079 3.34945 3.70524 3.85204 3.99125 4.24812 4.48444 4.61835 4.68310 4.74230 5.18098 5.34865 5.35906 5.45364 5.59914 5.68098 5.76394 5.83514 5.91493 6.07101 6.21454 6.28905 6.43342 6.83072 7.06828 7.10069 7.12553 7.30211 7.41756 7.60860 7.77672 8.01947 8.12841 8.23737 8.31143 8.67550 8.79884 8.97838 9.02528 10.25984 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024758 B = 0.004090 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.664035 B = 6844.581177 C = 7693.674139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.102 3.898 3 O -0.543 6.543 4 C -0.148 4.148 5 C -0.129 4.129 6 H 0.114 0.886 7 C 0.511 3.489 8 O -0.515 6.515 9 N -0.667 5.667 10 C 0.147 3.853 11 C -0.262 4.262 12 C -0.093 4.093 13 C -0.173 4.173 14 C 0.116 3.884 15 C -0.457 4.457 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.796 5.796 19 Si 0.910 3.090 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.210 4.210 24 C -0.102 4.102 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.377 0.623 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.398 0.602 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.279 0.721 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.161 14.881 -4.468 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 O -0.349 6.349 4 C -0.186 4.186 5 C -0.150 4.150 6 H 0.132 0.868 7 C 0.297 3.703 8 O -0.390 6.390 9 N -0.311 5.311 10 C 0.056 3.944 11 C -0.283 4.283 12 C -0.112 4.112 13 C -0.193 4.193 14 C 0.113 3.887 15 C -0.486 4.486 16 H 0.095 0.905 17 C -0.143 4.143 18 N -0.421 5.421 19 Si 0.735 3.265 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.231 4.231 24 C -0.139 4.139 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.224 0.776 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.231 0.769 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.139 0.861 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.032 13.957 -3.235 15.185 hybrid contribution -0.350 -0.131 -0.679 0.775 sum -5.381 13.826 -3.914 15.344 Atomic orbital electron populations 1.22285 0.94582 1.03160 1.02543 1.22211 0.91919 0.82660 0.97147 1.86515 1.65691 1.21847 1.60853 1.23647 0.97869 1.00087 0.96954 1.22646 0.99250 0.93632 0.99497 0.86850 1.20460 0.79314 0.89693 0.80816 1.90747 1.50807 1.59072 1.38367 1.43462 1.44720 1.10985 1.31896 1.17483 0.93345 0.81318 1.02287 1.20060 0.93785 0.96256 1.18235 1.20472 0.97667 0.92770 1.00334 1.21410 0.94544 0.98869 1.04467 1.17529 0.92575 0.90790 0.87763 1.19573 0.94710 0.98750 1.35601 0.90508 1.25901 0.95515 0.99924 0.92916 1.69824 1.16696 1.27266 1.28350 0.86285 0.81218 0.80603 0.78434 1.19328 1.20326 1.18633 1.21062 0.98947 0.91713 1.11403 1.22970 0.97026 0.97690 0.96236 0.91585 0.92263 0.90906 0.77550 0.90302 0.88736 0.76886 0.89384 0.89100 0.86074 0.90978 0.87210 0.87249 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.44 37.16 0.35 -1.05 16 2 C 0.10 1.02 1.81 -89.72 -0.16 0.85 16 3 O -0.54 -5.19 13.41 -35.23 -0.47 -5.66 16 4 C -0.15 -1.55 7.03 -25.83 -0.18 -1.74 16 5 C -0.13 -1.69 4.08 -90.95 -0.37 -2.07 16 6 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 7 C 0.51 9.30 7.19 -10.99 -0.08 9.22 16 8 O -0.52 -11.79 13.39 5.55 0.07 -11.71 16 9 N -0.67 -12.18 5.33 -9.91 -0.05 -12.23 16 10 C 0.15 3.41 6.28 -83.76 -0.53 2.89 16 11 C -0.26 -5.91 9.97 -39.10 -0.39 -6.30 16 12 C -0.09 -2.23 10.02 -39.69 -0.40 -2.63 16 13 C -0.17 -4.63 8.69 -38.84 -0.34 -4.97 16 14 C 0.12 3.26 5.58 -106.85 -0.60 2.66 16 15 C -0.46 -12.71 9.06 -37.74 -0.34 -13.05 16 16 H 0.08 2.08 7.89 -52.49 -0.41 1.67 16 17 C 0.07 1.94 5.19 -17.34 -0.09 1.85 16 18 N -0.80 -21.25 10.82 55.55 0.60 -20.65 16 19 Si 0.91 19.33 29.59 -169.99 -5.03 14.30 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 23 C -0.21 -5.54 8.43 -38.69 -0.33 -5.87 16 24 C -0.10 -1.29 6.79 -25.92 -0.18 -1.47 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.63 7.95 -51.93 -0.41 0.22 16 28 H 0.38 1.96 9.04 45.56 0.41 2.37 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.06 7.92 -51.93 -0.41 0.65 16 31 H 0.40 5.65 8.82 -40.82 -0.36 5.29 16 32 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 33 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.12 3.32 6.07 -52.48 -0.32 3.00 16 35 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 36 H 0.11 2.98 6.28 -52.48 -0.33 2.65 16 37 H 0.11 1.53 7.41 -51.93 -0.38 1.14 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 319.94 15.07 4.82 4.82 Total: -1.00 -32.39 319.94 -8.00 -40.38 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -4.31 Total: 12.40 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -3.62 Total: -21.65 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.55 Total: -32.88 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.40 Total: -17.37 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.39 -8.00 -40.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185470708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.086 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds