Wall clock time and date at job start Mon Mar 30 2020 20:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35906 * 117.00196 * 2 1 4 4 C 1.38750 * 120.04822 * 359.97438 * 3 2 1 5 5 C 1.38147 * 119.97706 * 179.97438 * 4 3 2 6 6 C 1.38472 * 119.82613 * 0.02562 * 5 4 3 7 7 C 1.37310 * 120.29466 * 0.02562 * 6 5 4 8 8 C 1.38321 * 120.29648 * 359.95290 * 7 6 5 9 9 C 1.51252 * 120.26687 * 179.97438 * 7 6 5 10 10 C 1.53266 * 108.65963 * 289.27263 * 9 7 6 11 11 N 1.45957 * 109.74958 * 80.84903 * 10 9 7 12 12 C 1.34769 * 118.42226 * 114.92176 * 11 10 9 13 13 O 1.21693 * 120.00393 * 175.03008 * 12 11 10 14 14 C 1.46380 * 120.00087 * 355.03824 * 12 11 10 15 15 H 1.08000 * 119.99299 * 336.17888 * 14 12 11 16 16 C 1.40046 * 120.00224 * 156.17701 * 14 12 11 17 17 N 1.30668 * 120.00055 * 342.56162 * 16 14 12 18 18 Si 1.86804 * 119.99742 * 162.56304 * 16 14 12 19 19 H 1.48500 * 109.46827 * 180.02562 * 18 16 14 20 20 H 1.48493 * 109.47353 * 299.99625 * 18 16 14 21 21 H 1.48500 * 109.46898 * 60.00357 * 18 16 14 22 22 C 1.45972 * 123.15974 * 295.21305 * 11 10 9 23 23 C 1.51247 * 119.41203 * 180.02562 * 6 5 4 24 24 H 1.08995 * 109.47042 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46793 * 300.00066 * 1 2 3 26 26 H 1.09001 * 109.46886 * 60.00098 * 1 2 3 27 27 H 1.08000 * 120.01431 * 359.97387 * 4 3 2 28 28 H 1.07992 * 120.09231 * 179.97438 * 5 4 3 29 29 H 1.07998 * 120.14656 * 180.02562 * 8 7 6 30 30 H 1.09001 * 109.60449 * 169.52447 * 9 7 6 31 31 H 1.09000 * 109.60797 * 49.02503 * 9 7 6 32 32 H 1.09002 * 109.42609 * 320.76790 * 10 9 7 33 33 H 1.09000 * 109.38235 * 200.90935 * 10 9 7 34 34 H 0.97003 * 120.00276 * 354.28390 * 17 16 14 35 35 H 1.09000 * 109.42526 * 184.83249 * 22 11 10 36 36 H 1.08995 * 109.42544 * 304.66608 * 22 11 10 37 37 H 1.09004 * 109.60281 * 10.53181 * 23 6 5 38 38 H 1.08995 * 109.60750 * 131.02402 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9201 3.6053 0.0000 6 6 3.3032 3.6718 0.0005 7 6 4.0520 2.5209 0.0000 8 6 3.4315 1.2847 -0.0001 9 6 5.5628 2.5943 0.0000 10 6 6.0293 3.0974 -1.3705 11 7 5.9094 4.5508 -1.4293 12 6 7.0349 5.2831 -1.5455 13 8 6.9639 6.4896 -1.6880 14 6 8.3427 4.6272 -1.5004 15 1 8.4510 3.6719 -1.0084 16 6 9.4535 5.2384 -2.0953 17 7 9.2830 6.1961 -2.9678 18 14 11.1788 4.6846 -1.6413 19 1 12.1717 5.4835 -2.4037 20 1 11.3961 4.8844 -0.1860 21 1 11.3403 3.2462 -1.9732 22 6 4.6297 5.2498 -1.3621 23 6 3.9818 5.0235 0.0017 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2128 2.3199 -0.0014 28 1 1.3346 4.5127 -0.0008 29 1 4.0228 0.3810 -0.0001 30 1 5.9771 1.6034 0.1862 31 1 5.8955 3.2842 0.7755 32 1 5.4118 2.6510 -2.1500 33 1 7.0701 2.8129 -1.5252 34 1 8.3893 6.4274 -3.2656 35 1 4.7914 6.3173 -1.5117 36 1 3.9686 4.8714 -2.1417 37 1 3.2436 5.8032 0.1897 38 1 4.7480 5.0475 0.7766 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336166301.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:15 Heat of formation + Delta-G solvation = -60.851352 kcal Electronic energy + Delta-G solvation = -21234.385484 eV Core-core repulsion = 18041.439908 eV Total energy + Delta-G solvation = -3192.945576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.39129 -38.84382 -37.42216 -34.84463 -33.08067 -32.35805 -31.50400 -29.82433 -27.35931 -27.00753 -25.52656 -23.58233 -22.70122 -21.74045 -20.07419 -19.30094 -17.76721 -17.16783 -16.34373 -15.84207 -15.60986 -15.18136 -14.80108 -14.48026 -14.06781 -13.80895 -13.66350 -13.30528 -13.05220 -12.80414 -12.36419 -12.25817 -11.99544 -11.72318 -11.53417 -11.34557 -11.02143 -10.90269 -10.79985 -10.73680 -10.48170 -10.27333 -10.16348 -9.94861 -8.75444 -8.73604 -8.05804 -7.72881 -7.41764 -6.73574 -4.67712 1.40272 1.51489 3.19365 3.27921 3.33036 3.51698 3.80554 4.17969 4.45135 4.48344 4.74148 4.83751 4.94503 4.95723 5.00975 5.24424 5.33177 5.36895 5.45606 5.52008 5.72222 5.79014 5.80525 5.85755 5.92229 6.00490 6.15449 6.31768 6.36664 6.48291 6.50187 6.53806 6.69983 6.86253 6.90097 7.38565 7.54401 7.87926 8.09277 8.37108 8.85441 9.38483 10.31869 10.57306 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.033720 B = 0.004301 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.174529 B = 6508.814748 C = 7098.826271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.116 3.884 4 C -0.214 4.214 5 C -0.080 4.080 6 C -0.107 4.107 7 C -0.032 4.032 8 C -0.149 4.149 9 C -0.102 4.102 10 C 0.130 3.870 11 N -0.635 5.635 12 C 0.555 3.445 13 O -0.620 6.620 14 C -0.619 4.619 15 H 0.072 0.928 16 C 0.052 3.948 17 N -0.811 5.811 18 Si 1.073 2.927 19 H -0.277 1.277 20 H -0.279 1.279 21 H -0.280 1.280 22 C 0.124 3.876 23 C -0.093 4.093 24 H 0.096 0.904 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.106 0.894 34 H 0.300 0.700 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.495 -11.070 5.794 19.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.071 3.929 4 C -0.233 4.233 5 C -0.098 4.098 6 C -0.107 4.107 7 C -0.032 4.032 8 C -0.167 4.167 9 C -0.140 4.140 10 C 0.005 3.995 11 N -0.370 5.370 12 C 0.363 3.637 13 O -0.508 6.508 14 C -0.655 4.655 15 H 0.090 0.910 16 C -0.170 4.170 17 N -0.440 5.440 18 Si 0.898 3.102 19 H -0.202 1.202 20 H -0.205 1.205 21 H -0.206 1.206 22 C 0.000 4.000 23 C -0.132 4.132 24 H 0.115 0.885 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.140 0.860 28 H 0.141 0.859 29 H 0.147 0.853 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.922 -10.299 5.427 17.393 hybrid contribution -2.293 -0.415 0.374 2.360 sum -15.215 -10.714 5.801 19.492 Atomic orbital electron populations 1.22993 0.78841 1.03558 1.01196 1.86049 1.21020 1.27257 1.89128 1.18975 0.92281 0.83901 0.97723 1.21118 0.99544 0.92433 1.10205 1.20896 0.93840 0.96840 0.98200 1.19724 0.93120 0.95531 1.02326 1.19608 0.96365 0.91418 0.95850 1.20368 0.91095 0.98021 1.07254 1.21375 0.89862 1.02217 1.00547 1.21256 1.03065 0.81659 0.93490 1.47637 1.05737 1.05285 1.78349 1.18539 0.83847 0.85996 0.75284 1.90501 1.87342 1.15516 1.57442 1.21827 0.92611 1.09187 1.41866 0.90996 1.26601 1.04845 0.93118 0.92401 1.70165 1.30005 1.22737 1.21101 0.83562 0.73663 0.76146 0.76878 1.20237 1.20494 1.20614 1.20876 0.85669 0.99448 0.93985 1.21122 0.99447 0.92572 1.00023 0.88524 0.92882 0.92826 0.85954 0.85925 0.85290 0.90595 0.89947 0.93633 0.87590 0.88566 0.89143 0.93650 0.91142 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.96 10.50 -19.44 -0.20 -4.17 16 3 C 0.12 1.57 6.69 -39.21 -0.26 1.31 16 4 C -0.21 -2.67 9.04 -39.43 -0.36 -3.03 16 5 C -0.08 -1.06 9.67 -39.53 -0.38 -1.44 16 6 C -0.11 -1.64 5.05 -104.61 -0.53 -2.17 16 7 C -0.03 -0.50 5.04 -104.66 -0.53 -1.03 16 8 C -0.15 -2.13 9.61 -39.36 -0.38 -2.51 16 9 C -0.10 -1.63 5.48 -27.48 -0.15 -1.78 16 10 C 0.13 2.46 5.90 -4.20 -0.02 2.44 16 11 N -0.64 -14.27 2.76 -176.24 -0.49 -14.76 16 12 C 0.56 15.39 7.07 -12.99 -0.09 15.30 16 13 O -0.62 -19.32 14.08 5.20 0.07 -19.25 16 14 C -0.62 -17.03 8.23 -35.63 -0.29 -17.32 16 15 H 0.07 1.82 6.34 -52.49 -0.33 1.48 16 16 C 0.05 1.45 5.37 -17.37 -0.09 1.36 16 17 N -0.81 -24.48 13.25 55.55 0.74 -23.74 16 18 Si 1.07 23.26 29.97 -169.99 -5.09 18.17 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 22 C 0.12 2.46 6.03 -4.49 -0.03 2.43 16 23 C -0.09 -1.53 5.46 -27.78 -0.15 -1.68 16 24 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 26 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 27 H 0.12 1.20 6.30 -52.49 -0.33 0.87 16 28 H 0.12 1.37 7.96 -52.49 -0.42 0.95 16 29 H 0.13 1.67 7.96 -52.49 -0.42 1.25 16 30 H 0.08 1.03 7.90 -51.93 -0.41 0.62 16 31 H 0.08 1.43 7.21 -51.93 -0.37 1.05 16 32 H 0.05 0.82 7.94 -51.93 -0.41 0.41 16 33 H 0.11 2.12 5.33 -51.93 -0.28 1.84 16 34 H 0.30 9.54 6.61 -40.82 -0.27 9.27 16 35 H 0.09 1.99 6.74 -51.93 -0.35 1.63 16 36 H 0.05 0.85 7.94 -51.93 -0.41 0.43 16 37 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 38 H 0.08 1.37 7.21 -51.93 -0.37 1.00 16 LS Contribution 307.12 15.07 4.63 4.63 Total: -1.00 -33.31 307.12 -7.43 -40.74 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.80 Total: 5.26 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -2.28 Total: -6.88 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.25 Total: -38.50 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.13 Total: -23.41 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.09 Total: 18.17 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.31 -7.43 -40.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336166301.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.112 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds