Wall clock time and date at job start Mon Mar 30 2020 20:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47643 * 2 1 4 4 N 1.46899 * 109.47169 * 119.99795 * 2 1 3 5 5 C 1.46893 * 111.00557 * 275.00061 * 4 2 1 6 6 C 1.52997 * 109.47638 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47535 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46997 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00319 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99717 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99913 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.53003 * 109.47248 * 240.00357 * 2 1 3 17 17 H 1.09003 * 110.00864 * 299.29587 * 16 2 1 18 18 C 1.53869 * 110.03056 * 60.67779 * 16 2 1 19 19 C 1.54158 * 108.70740 * 166.47413 * 18 16 2 20 20 S 1.82920 * 105.08419 * 332.09241 * 19 18 16 21 21 O 1.42103 * 109.35511 * 115.52417 * 20 19 18 22 22 O 1.42100 * 109.35256 * 248.72471 * 20 19 18 23 23 C 1.55049 * 110.02587 * 177.92163 * 16 2 1 24 24 H 1.09007 * 109.47414 * 59.99823 * 1 2 3 25 25 H 1.08997 * 109.47223 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47288 * 300.00369 * 1 2 3 27 27 H 1.00907 * 111.00122 * 151.04483 * 4 2 1 28 28 H 1.09005 * 109.46920 * 59.99721 * 5 4 2 29 29 H 1.09004 * 109.47361 * 300.00031 * 5 4 2 30 30 H 1.09005 * 109.46889 * 60.00074 * 6 5 4 31 31 H 1.09002 * 109.47401 * 300.00163 * 6 5 4 32 32 H 1.09005 * 109.46767 * 60.00250 * 7 6 5 33 33 H 1.09002 * 109.47113 * 300.00590 * 7 6 5 34 34 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 35 35 H 1.09004 * 109.64403 * 286.32927 * 18 16 2 36 36 H 1.09004 * 109.64788 * 46.61638 * 18 16 2 37 37 H 1.09002 * 110.31998 * 90.99022 * 19 18 16 38 38 H 1.09005 * 110.32317 * 213.08772 * 19 18 16 39 39 H 1.08994 * 110.79368 * 316.53806 * 23 16 2 40 40 H 1.09004 * 110.78908 * 80.00435 * 23 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5950 -0.5332 3.5745 7 6 2.6610 0.4200 4.7695 8 6 3.1653 -0.3246 5.9787 9 1 3.4142 -1.3728 5.9024 10 6 3.3089 0.3323 7.1824 11 7 3.7494 -0.3174 8.2376 12 14 2.8776 2.1450 7.3144 13 1 4.0785 2.9632 7.0083 14 1 1.7983 2.4688 6.3471 15 1 2.4131 2.4442 8.6928 16 6 2.0400 -0.7212 -1.2493 17 1 1.6918 -1.7541 -1.2520 18 6 1.5482 0.0040 -2.5142 19 6 2.3400 -0.5247 -3.7266 20 16 3.9522 -1.0579 -3.0465 21 8 4.0903 -2.4629 -3.2087 22 8 4.9721 -0.1857 -3.5137 23 6 3.5895 -0.6831 -1.2890 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 2.9173 -1.1205 1.0287 28 1 1.0870 0.6163 2.5525 29 1 2.7588 1.0462 2.1183 30 1 3.5904 -0.9272 3.3691 31 1 1.9183 -1.3566 3.8030 32 1 1.6658 0.8144 4.9750 33 1 3.3379 1.2432 4.5407 34 1 3.8508 0.1449 9.0844 35 1 0.4852 -0.1899 -2.6578 36 1 1.7120 1.0765 -2.4088 37 1 1.8213 -1.3705 -4.1779 38 1 2.4810 0.2680 -4.4615 39 1 3.9592 0.3065 -1.0205 40 1 4.0121 -1.4458 -0.6349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262359708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:07:37 Heat of formation + Delta-G solvation = -90.610124 kcal Electronic energy + Delta-G solvation = -19409.204902 eV Core-core repulsion = 16350.412840 eV Total energy + Delta-G solvation = -3058.792062 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.88394 -37.35113 -36.34398 -35.71832 -33.58879 -31.91157 -30.17931 -29.80291 -26.39892 -25.32773 -23.15605 -21.72604 -20.66627 -19.90619 -19.15545 -17.21954 -17.12830 -16.65783 -16.09398 -15.63255 -15.01132 -14.93824 -14.60540 -14.27319 -13.97576 -13.69542 -13.32039 -12.73467 -12.55045 -12.51757 -12.47155 -12.32450 -12.22002 -12.08735 -11.91670 -11.58444 -11.53917 -11.13578 -10.93333 -10.89937 -10.74910 -10.52464 -9.97504 -9.75996 -9.59255 -9.18804 -8.54560 -8.36642 -6.04688 -4.02621 -0.31682 2.16550 3.21814 3.29169 3.36697 3.39878 3.59392 3.81906 4.02841 4.11792 4.36918 4.42397 4.44231 4.50986 4.77340 5.05083 5.07894 5.16910 5.19995 5.28012 5.29060 5.42215 5.56691 5.58943 5.65243 5.71572 5.83786 6.07848 6.18916 6.50375 6.53996 6.88064 7.13235 7.31857 7.39740 7.48520 7.79376 8.54213 9.00846 9.57759 11.08903 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029790 B = 0.003230 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.672886 B = 8666.566109 C = 9052.506015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.098 3.902 3 H 0.048 0.952 4 N -0.687 5.687 5 C 0.056 3.944 6 C -0.100 4.100 7 C -0.013 4.013 8 C -0.520 4.520 9 H 0.072 0.928 10 C 0.065 3.935 11 N -0.904 5.904 12 Si 0.881 3.119 13 H -0.278 1.278 14 H -0.266 1.266 15 H -0.288 1.288 16 C -0.092 4.092 17 H 0.106 0.894 18 C -0.109 4.109 19 C -0.593 4.593 20 S 2.389 3.611 21 O -0.936 6.936 22 O -0.941 6.941 23 C -0.592 4.592 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.340 0.660 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.015 0.985 33 H 0.008 0.992 34 H 0.263 0.737 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.975 1.993 -25.482 26.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.013 4.013 3 H 0.066 0.934 4 N -0.319 5.319 5 C -0.072 4.072 6 C -0.138 4.138 7 C -0.050 4.050 8 C -0.558 4.558 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.543 5.543 12 Si 0.708 3.292 13 H -0.204 1.204 14 H -0.191 1.191 15 H -0.214 1.214 16 C -0.112 4.112 17 H 0.124 0.876 18 C -0.148 4.148 19 C -0.722 4.722 20 S 2.573 3.427 21 O -0.933 6.933 22 O -0.938 6.938 23 C -0.722 4.722 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.159 0.841 28 H 0.086 0.914 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.027 0.973 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.724 1.391 -25.582 26.251 hybrid contribution -0.045 1.825 0.428 1.875 sum -5.769 3.216 -25.154 26.007 Atomic orbital electron populations 1.21877 0.94172 1.02706 1.01526 1.21414 0.96173 0.95626 0.88127 0.93384 1.60610 1.33587 1.33794 1.03893 1.22211 1.00520 0.93717 0.90778 1.21453 1.00061 0.99176 0.93140 1.19539 0.96426 0.95193 0.93884 1.21149 1.43574 0.98314 0.92731 0.91025 1.25052 0.94669 0.98139 0.95753 1.69920 1.46830 1.36620 1.00945 0.86761 0.79244 0.85882 0.77264 1.20375 1.19075 1.21387 1.22105 0.90337 1.02789 0.95930 0.87618 1.21988 1.02000 1.01366 0.89467 1.30502 1.21214 1.12297 1.08224 1.09069 0.78114 0.75737 0.79762 1.93633 1.85818 1.29078 1.84787 1.93618 1.53801 1.67511 1.78902 1.30804 1.04690 1.12766 1.23906 0.92585 0.91693 0.92149 0.84092 0.91358 0.95726 0.93070 0.91857 0.96645 0.97332 0.92753 0.88490 0.89584 0.84506 0.84456 0.84319 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.12 37.15 0.34 -0.90 16 2 C 0.10 0.88 2.20 -67.72 -0.15 0.73 16 3 H 0.05 0.44 7.80 -51.93 -0.40 0.03 16 4 N -0.69 -8.34 6.31 -106.73 -0.67 -9.02 16 5 C 0.06 0.85 5.48 -3.83 -0.02 0.83 16 6 C -0.10 -1.93 5.41 -26.73 -0.14 -2.07 16 7 C -0.01 -0.29 4.04 -27.88 -0.11 -0.41 16 8 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 9 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 10 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 11 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 12 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 C -0.09 -0.60 2.30 -89.08 -0.20 -0.81 16 17 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 18 C -0.11 -0.50 4.98 -25.67 -0.13 -0.62 16 19 C -0.59 -2.55 7.26 37.76 0.27 -2.28 16 20 S 2.39 17.86 6.11 -107.50 -0.66 17.20 16 21 O -0.94 -10.57 18.14 -57.71 -1.05 -11.62 16 22 O -0.94 -10.63 18.15 -57.71 -1.05 -11.68 16 23 C -0.59 -3.91 5.91 38.24 0.23 -3.68 16 24 H 0.06 0.35 6.82 -51.93 -0.35 0.00 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.60 7.45 -51.93 -0.39 0.22 16 27 H 0.34 3.84 6.78 -39.29 -0.27 3.57 16 28 H 0.07 1.04 7.44 -51.93 -0.39 0.65 16 29 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 33 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.10 0.35 7.30 -51.93 -0.38 -0.03 16 36 H 0.09 0.33 8.10 -51.93 -0.42 -0.09 16 37 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.14 0.82 8.10 -51.93 -0.42 0.40 16 40 H 0.14 0.91 7.32 -51.93 -0.38 0.53 16 LS Contribution 327.82 15.07 4.94 4.94 Total: -1.00 -36.56 327.82 -9.44 -46.00 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.71 Total: -2.97 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -0.35 Total: -22.63 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.10 Total: -36.29 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -2.09 Total: -23.30 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 16 Polarization: 17.86 SS G_CDS: -0.66 Total: 17.20 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.56 -9.44 -46.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262359708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.611 kcal (2) G-P(sol) polarization free energy of solvation -36.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds