Wall clock time and date at job start Mon Mar 30 2020 20:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 110.88891 * 2 1 4 4 C 1.54907 * 111.03871 * 123.91102 * 2 1 3 5 5 N 1.47425 * 104.83064 * 155.09864 * 4 2 1 6 6 C 1.34778 * 125.64673 * 156.14001 * 5 4 2 7 7 O 1.21511 * 119.99879 * 354.30916 * 6 5 4 8 8 C 1.48146 * 119.99855 * 174.31122 * 6 5 4 9 9 C 1.39813 * 120.92533 * 6.75314 * 8 6 5 10 10 C 1.38147 * 119.00284 * 179.75646 * 9 8 6 11 11 N 1.31813 * 120.89721 * 0.52736 * 10 9 8 12 12 C 1.31818 * 122.04860 * 359.74551 * 11 10 9 13 13 C 1.38153 * 120.89463 * 359.97384 * 12 11 10 14 14 C 1.47015 * 108.70617 * 335.86631 * 5 4 2 15 15 C 1.54326 * 107.27230 * 1.06315 * 14 5 4 16 16 H 1.08999 * 110.72137 * 263.65369 * 15 14 5 17 17 N 1.46500 * 110.72296 * 140.55372 * 15 14 5 18 18 C 1.36931 * 120.00211 * 86.45558 * 17 15 14 19 19 H 1.08006 * 119.99422 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00105 * 179.97438 * 18 17 15 21 21 N 1.31626 * 119.99604 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00112 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47293 * 89.99813 * 22 20 18 24 24 H 1.48505 * 109.47187 * 209.99875 * 22 20 18 25 25 H 1.48504 * 109.46984 * 329.99778 * 22 20 18 26 26 H 1.09006 * 109.47214 * 183.87769 * 1 2 3 27 27 H 1.09007 * 109.47164 * 303.87362 * 1 2 3 28 28 H 1.09004 * 109.47510 * 63.87655 * 1 2 3 29 29 H 1.08997 * 110.37184 * 36.25711 * 4 2 1 30 30 H 1.09003 * 110.36480 * 273.93479 * 4 2 1 31 31 H 1.08002 * 120.49661 * 359.97438 * 9 8 6 32 32 H 1.08003 * 119.55397 * 180.27046 * 10 9 8 33 33 H 1.07997 * 119.55213 * 179.97438 * 12 11 10 34 34 H 1.07998 * 120.49855 * 180.02562 * 13 12 11 35 35 H 1.09000 * 109.88135 * 120.47430 * 14 5 4 36 36 H 1.09000 * 109.88642 * 241.49302 * 14 5 4 37 37 H 0.97005 * 119.99771 * 266.45865 * 17 15 14 38 38 H 0.97001 * 119.99386 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0861 -0.8066 1.1999 5 7 3.4280 -1.2422 0.7723 6 6 4.4477 -1.5646 1.5926 7 8 4.3345 -1.4095 2.7924 8 6 5.7064 -2.1080 1.0313 9 6 5.9118 -2.1639 -0.3505 10 6 7.1027 -2.6737 -0.8306 11 7 8.0325 -3.1126 -0.0058 12 6 7.8771 -3.0832 1.3029 13 6 6.7197 -2.5846 1.8688 14 6 3.4678 -1.2730 -0.6970 15 6 2.0861 -0.8074 -1.2027 16 1 1.4481 -1.6630 -1.4243 17 7 2.2277 0.0504 -2.3818 18 6 2.3022 -0.5081 -3.6298 19 1 2.2562 -1.5810 -3.7449 20 6 2.4358 0.3047 -4.7471 21 7 2.5079 -0.2323 -5.9467 22 14 2.5147 2.1603 -4.5481 23 1 3.9291 2.5806 -4.3807 24 1 1.9440 2.8122 -5.7543 25 1 1.7335 2.5634 -3.3512 26 1 -0.3634 -1.0254 0.0695 27 1 -0.3634 0.5728 0.8533 28 1 -0.3634 0.4525 -0.9227 29 1 1.4533 -1.6707 1.4021 30 1 2.1568 -0.1721 2.0834 31 1 5.1524 -1.8106 -1.0322 32 1 7.2725 -2.7170 -1.8963 33 1 8.6653 -3.4540 1.9413 34 1 6.5993 -2.5632 2.9418 35 1 4.2424 -0.5981 -1.0611 36 1 3.6685 -2.2876 -1.0413 37 1 2.2687 1.0140 -2.2784 38 1 2.6017 0.3357 -6.7274 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054331069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:06:04 Heat of formation + Delta-G solvation = 40.649976 kcal Electronic energy + Delta-G solvation = -21202.013397 eV Core-core repulsion = 18045.762000 eV Total energy + Delta-G solvation = -3156.251397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.80299 -39.35297 -37.75054 -34.40489 -33.37194 -32.13147 -31.37213 -30.98551 -28.23202 -26.81064 -24.80502 -23.59830 -23.30769 -21.45938 -20.35425 -20.05198 -17.72929 -17.55556 -16.67521 -16.02624 -15.96158 -15.34939 -15.00263 -14.65043 -14.29321 -13.90257 -13.78815 -13.49244 -13.44290 -13.17841 -12.72394 -12.60076 -12.42009 -11.95576 -11.65116 -11.48840 -11.14859 -10.78957 -10.75942 -10.46012 -10.26552 -10.10120 -9.92916 -9.74677 -9.51411 -9.25446 -9.08579 -8.58978 -7.50876 -5.93951 -3.33034 0.68372 1.03831 2.86261 2.92070 3.25975 3.28908 3.35830 3.81570 4.28465 4.37108 4.43840 4.68273 4.81774 4.85451 4.90447 4.95349 5.06159 5.29703 5.40704 5.44143 5.55409 5.57544 5.63031 5.68004 5.72870 5.80555 5.91944 5.94998 6.00189 6.10693 6.20198 6.30111 6.37634 6.55518 6.60531 7.48735 7.78956 7.83750 8.07462 8.24386 9.00270 9.72642 9.90089 11.23275 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.005876 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.838482 B = 4763.702699 C = 6081.709887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 H 0.083 0.917 4 C 0.114 3.886 5 N -0.604 5.604 6 C 0.570 3.430 7 O -0.544 6.544 8 C -0.085 4.085 9 C -0.170 4.170 10 C 0.096 3.904 11 N -0.473 5.473 12 C 0.087 3.913 13 C -0.120 4.120 14 C 0.060 3.940 15 C 0.181 3.819 16 H 0.078 0.922 17 N -0.735 5.735 18 C -0.258 4.258 19 H 0.093 0.907 20 C 0.014 3.986 21 N -0.926 5.926 22 Si 0.881 3.119 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.276 1.276 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.179 0.821 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.144 0.856 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.365 0.635 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.104 -2.775 13.576 14.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 H 0.101 0.899 4 C -0.009 4.009 5 N -0.337 5.337 6 C 0.359 3.641 7 O -0.422 6.422 8 C -0.096 4.096 9 C -0.189 4.189 10 C -0.060 4.060 11 N -0.183 5.183 12 C -0.069 4.069 13 C -0.141 4.141 14 C -0.066 4.066 15 C 0.069 3.931 16 H 0.096 0.904 17 N -0.377 5.377 18 C -0.388 4.388 19 H 0.111 0.889 20 C -0.183 4.183 21 N -0.572 5.572 22 Si 0.711 3.289 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.202 1.202 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.196 0.804 32 H 0.182 0.818 33 H 0.177 0.823 34 H 0.162 0.838 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.198 0.802 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.849 -3.189 13.664 14.549 hybrid contribution -0.552 1.662 0.246 1.768 sum 3.298 -1.527 13.910 14.377 Atomic orbital electron populations 1.21627 0.93449 1.02005 1.02188 1.22671 0.96708 0.99686 0.94624 0.89891 1.22325 0.82177 0.98447 0.97918 1.48374 1.12177 1.65171 1.07938 1.17895 0.82527 0.78114 0.85541 1.90741 1.81991 1.54968 1.14523 1.20306 0.94999 1.00055 0.94244 1.23974 1.00702 0.98097 0.96140 1.22913 0.88984 0.93841 1.00308 1.67550 1.31917 1.14065 1.04770 1.22751 0.96253 0.96598 0.91332 1.22265 0.93272 0.96934 1.01621 1.23772 1.03183 1.01765 0.77837 1.21279 0.91652 0.94019 0.86148 0.90413 1.42722 1.88606 1.04071 1.02263 1.19048 1.44072 0.94014 0.81616 0.88883 1.24670 1.01206 0.97354 0.95093 1.69696 1.55731 1.34398 0.97366 0.86618 0.77983 0.87156 0.77145 1.20938 1.21561 1.20208 0.92417 0.92939 0.91343 0.91050 0.90473 0.80434 0.81835 0.82297 0.83812 0.89759 0.90632 0.80160 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.31 37.16 0.35 -1.28 16 2 C -0.12 -1.59 3.25 -88.47 -0.29 -1.88 16 3 H 0.08 1.17 8.00 -51.93 -0.42 0.75 16 4 C 0.11 1.50 6.40 -2.53 -0.02 1.49 16 5 N -0.60 -8.89 3.33 -171.84 -0.57 -9.46 16 6 C 0.57 9.02 7.83 -12.19 -0.10 8.92 16 7 O -0.54 -9.80 16.70 5.36 0.09 -9.71 16 8 C -0.08 -1.21 5.91 -104.65 -0.62 -1.83 16 9 C -0.17 -2.29 8.69 -39.03 -0.34 -2.63 16 10 C 0.10 1.25 11.17 -17.59 -0.20 1.05 16 11 N -0.47 -6.32 10.34 -13.30 -0.14 -6.46 16 12 C 0.09 1.01 11.17 -17.59 -0.20 0.82 16 13 C -0.12 -1.51 9.68 -39.02 -0.38 -1.88 16 14 C 0.06 0.89 4.64 -3.07 -0.01 0.88 16 15 C 0.18 2.94 3.06 -66.09 -0.20 2.74 16 16 H 0.08 1.29 8.02 -51.93 -0.42 0.88 16 17 N -0.74 -15.04 4.98 -51.65 -0.26 -15.30 16 18 C -0.26 -6.46 10.46 -15.06 -0.16 -6.62 16 19 H 0.09 2.50 8.06 -52.48 -0.42 2.07 16 20 C 0.01 0.37 5.50 -17.43 -0.10 0.28 16 21 N -0.93 -27.09 13.97 55.49 0.78 -26.31 16 22 Si 0.88 20.46 27.74 -169.99 -4.71 15.75 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 25 H -0.28 -5.99 6.52 56.52 0.37 -5.62 16 26 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 27 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.87 7.99 -51.93 -0.41 0.45 16 30 H 0.08 1.02 7.99 -51.93 -0.41 0.60 16 31 H 0.18 2.41 2.94 -52.90 -0.16 2.26 16 32 H 0.16 1.79 8.06 -52.48 -0.42 1.37 16 33 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.14 1.64 7.76 -52.49 -0.41 1.23 16 35 H 0.08 1.33 6.66 -51.93 -0.35 0.99 16 36 H 0.08 1.09 6.73 -51.93 -0.35 0.74 16 37 H 0.36 7.48 5.57 -40.82 -0.23 7.25 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 313.36 15.07 4.72 4.72 Total: -1.00 -30.51 313.36 -7.19 -37.71 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -4.85 Total: 9.02 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -2.25 Total: 0.05 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.19 Total: -57.53 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.71 Total: 15.75 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.51 -7.19 -37.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054331069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.355 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds