Wall clock time and date at job start Mon Mar 30 2020 20:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47191 * 2 1 4 4 C 1.53000 * 109.47129 * 239.99441 * 2 1 3 5 5 C 1.52995 * 109.46882 * 174.99831 * 4 2 1 6 6 C 1.50708 * 109.46867 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00025 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99696 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00232 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99637 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46825 * 90.00032 * 10 8 6 12 12 H 1.48498 * 109.46809 * 209.99669 * 10 8 6 13 13 H 1.48496 * 109.47156 * 329.99891 * 10 8 6 14 14 N 1.46906 * 109.46909 * 119.99480 * 2 1 3 15 15 C 1.46900 * 111.00086 * 274.99813 * 14 2 1 16 16 C 1.50702 * 109.46977 * 180.02562 * 15 14 2 17 17 C 1.40067 * 119.02477 * 90.00144 * 16 15 14 18 18 C 1.35603 * 121.94052 * 180.02562 * 17 16 15 19 19 C 1.40836 * 119.38876 * 0.23597 * 18 17 16 20 20 N 1.31022 * 138.56102 * 180.55756 * 19 18 17 21 21 O 1.21469 * 109.08881 * 179.44318 * 20 19 18 22 22 N 1.21469 * 116.28736 * 359.72409 * 21 20 19 23 23 C 1.31016 * 109.08616 * 0.02562 * 22 21 20 24 24 C 1.35592 * 119.02708 * 270.02327 * 16 15 14 25 25 H 1.09009 * 109.46985 * 300.00319 * 1 2 3 26 26 H 1.08995 * 109.47188 * 59.99951 * 1 2 3 27 27 H 1.09000 * 109.47351 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46968 * 295.00456 * 4 2 1 29 29 H 1.09000 * 109.46559 * 54.99894 * 4 2 1 30 30 H 1.08998 * 109.47829 * 300.00098 * 5 4 2 31 31 H 1.09008 * 109.47192 * 60.00675 * 5 4 2 32 32 H 0.97000 * 120.00126 * 179.97438 * 9 8 6 33 33 H 1.00897 * 110.99788 * 38.95439 * 14 2 1 34 34 H 1.09004 * 109.46990 * 60.00290 * 15 14 2 35 35 H 1.09000 * 109.47298 * 300.00647 * 15 14 2 36 36 H 1.07997 * 119.02836 * 0.02562 * 17 16 15 37 37 H 1.08002 * 120.30114 * 179.97438 * 18 17 16 38 38 H 1.08004 * 120.30788 * 359.95517 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 6 4.0672 -1.3244 -2.5437 7 1 3.3687 -1.8049 -3.2128 8 6 5.4185 -1.3616 -2.8149 9 7 6.2689 -0.7760 -2.0004 10 14 6.0412 -2.2424 -4.3400 11 1 6.0918 -1.2881 -5.4767 12 1 7.4022 -2.7771 -4.0817 13 1 5.1245 -3.3619 -4.6739 14 7 2.0196 -0.6924 1.1996 15 6 2.0824 0.2228 2.3469 16 6 2.5884 -0.5213 3.5558 17 6 3.9668 -0.5607 3.8018 18 6 4.4863 -1.2131 4.8711 19 6 3.6216 -1.8772 5.7625 20 7 3.6990 -2.5818 6.8644 21 8 2.5798 -2.9047 7.2089 22 7 1.6685 -2.5238 6.5019 23 6 2.1606 -1.8310 5.5048 24 6 1.6960 -1.1332 4.3729 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.7515 -1.7716 -1.2054 29 1 1.6053 -0.2619 -2.1369 30 1 3.8532 0.4369 -1.3573 31 1 3.9994 -1.0729 -0.4258 32 1 7.2197 -0.8025 -2.1910 33 1 1.4495 -1.4978 1.4102 34 1 1.0870 0.6165 2.5525 35 1 2.7588 1.0464 2.1182 36 1 4.6355 -0.0566 3.1198 37 1 5.5537 -1.2268 5.0351 38 1 0.6386 -1.0855 4.1582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:08:30 Heat of formation + Delta-G solvation = 122.991534 kcal Electronic energy + Delta-G solvation = -20333.746671 eV Core-core repulsion = 17181.065872 eV Total energy + Delta-G solvation = -3152.680799 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.70784 -39.33329 -37.16263 -34.88923 -34.09727 -32.98222 -31.86991 -30.58125 -29.04283 -26.60615 -25.26052 -24.96389 -22.95204 -21.46464 -21.34666 -19.97666 -18.99900 -18.74734 -18.06415 -16.18853 -15.89748 -15.40889 -15.07791 -14.58271 -14.53807 -14.25107 -13.54447 -13.23447 -12.95908 -12.74150 -12.50771 -12.30834 -12.25507 -11.93928 -11.90471 -11.69269 -11.41059 -11.26211 -11.17396 -10.86096 -10.47119 -10.31048 -9.81298 -9.66992 -9.26842 -8.94815 -8.70781 -8.27267 -8.03030 -5.92367 -3.93051 -0.12058 1.01258 1.82117 3.00753 3.15419 3.34891 3.34962 3.41410 3.44733 3.66904 4.34047 4.51470 4.54087 4.61135 4.72769 5.08370 5.10031 5.25876 5.32178 5.43733 5.44670 5.49993 5.56553 5.61637 5.76850 5.93588 5.99257 6.19293 6.22092 6.31297 6.34818 6.58998 6.82403 7.21791 7.34465 7.62936 7.80720 8.03242 8.17816 8.35356 8.53998 9.15557 9.69882 11.18734 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019035 B = 0.003810 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.628844 B = 7347.586715 C = 8338.423234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.084 3.916 3 H 0.075 0.925 4 C -0.099 4.099 5 C 0.029 3.971 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.666 5.666 15 C 0.092 3.908 16 C -0.029 4.029 17 C -0.054 4.054 18 C -0.076 4.076 19 C 0.020 3.980 20 N -0.352 5.352 21 O 0.370 5.630 22 N -0.353 5.353 23 C 0.022 3.978 24 C -0.077 4.077 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.007 0.993 31 H 0.033 0.967 32 H 0.258 0.742 33 H 0.337 0.663 34 H 0.040 0.960 35 H 0.091 0.909 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.073 2.274 14.438 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.025 4.025 3 H 0.093 0.907 4 C -0.137 4.137 5 C -0.008 4.008 6 C -0.557 4.557 7 H 0.069 0.931 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.296 5.296 15 C -0.037 4.037 16 C -0.034 4.034 17 C -0.076 4.076 18 C -0.097 4.097 19 C -0.132 4.132 20 N -0.074 5.074 21 O 0.133 5.867 22 N -0.076 5.076 23 C -0.130 4.130 24 C -0.099 4.099 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.026 0.974 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.156 0.844 34 H 0.058 0.942 35 H 0.109 0.891 36 H 0.170 0.830 37 H 0.165 0.835 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.409 1.748 15.258 17.509 hybrid contribution -0.363 0.004 -1.385 1.432 sum -8.772 1.752 13.873 16.506 Atomic orbital electron populations 1.22550 0.98455 1.01673 1.01418 1.21778 0.91028 0.98467 0.91224 0.90694 1.21637 1.00677 0.98433 0.92933 1.19002 0.88224 0.96482 0.97065 1.21349 0.91855 1.34034 1.08494 0.93134 1.24976 0.97127 0.95750 0.96475 1.69959 1.02164 1.44456 1.36921 0.86696 0.78161 0.80020 0.83700 1.20832 1.21319 1.20012 1.60577 1.58100 1.08694 1.02261 1.21056 0.99706 0.95154 0.87746 1.19753 0.93112 0.95449 0.95096 1.21059 0.94978 0.96208 0.95356 1.19980 0.99387 0.97363 0.92924 1.22958 0.94926 1.00661 0.94643 1.75203 1.03343 1.15108 1.13758 1.85344 1.07134 1.52683 1.41502 1.75193 1.13441 1.14126 1.04875 1.22824 0.91462 1.00961 0.97735 1.19741 1.00731 0.97942 0.91458 0.93684 0.92060 0.92710 0.93437 0.93377 0.97448 0.94911 0.93248 0.84437 0.94151 0.89078 0.82966 0.83520 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 9.16 37.16 0.34 -1.83 16 2 C 0.08 1.25 2.59 -67.71 -0.18 1.08 16 3 H 0.07 1.14 7.80 -51.93 -0.40 0.74 16 4 C -0.10 -1.92 4.83 -26.73 -0.13 -2.05 16 5 C 0.03 0.73 4.86 -27.88 -0.14 0.60 16 6 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 7 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 10 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 N -0.67 -9.29 5.69 -107.99 -0.61 -9.90 16 15 C 0.09 1.02 5.55 -4.98 -0.03 0.99 16 16 C -0.03 -0.32 5.36 -104.88 -0.56 -0.89 16 17 C -0.05 -0.60 9.51 -39.84 -0.38 -0.98 16 18 C -0.08 -0.86 10.08 -39.54 -0.40 -1.26 16 19 C 0.02 0.26 7.76 -83.03 -0.64 -0.38 16 20 N -0.35 -4.63 12.29 31.88 0.39 -4.24 16 21 O 0.37 4.63 11.67 26.94 0.31 4.95 16 22 N -0.35 -4.59 12.29 31.88 0.39 -4.20 16 23 C 0.02 0.28 7.76 -83.03 -0.64 -0.36 16 24 C -0.08 -0.85 9.65 -39.54 -0.38 -1.23 16 25 H 0.04 0.46 7.45 -51.92 -0.39 0.07 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.64 8.13 -51.93 -0.42 0.21 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.03 0.87 7.75 -51.92 -0.40 0.47 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.34 4.39 8.46 -39.29 -0.33 4.05 16 34 H 0.04 0.38 7.35 -51.93 -0.38 0.00 16 35 H 0.09 1.02 7.98 -51.93 -0.41 0.61 16 36 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 37 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.14 1.28 8.06 -52.48 -0.42 0.85 16 LS Contribution 325.48 15.07 4.90 4.90 Total: -1.00 -30.76 325.48 -7.69 -38.45 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -5.25 Total: -1.04 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -3.55 Total: -19.67 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.91 Total: -44.25 kcal Atomic # 8 Polarization: 4.63 SS G_CDS: 0.31 Total: 4.95 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.76 -7.69 -38.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.444 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds