Wall clock time and date at job start Mon Mar 30 2020 20:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00276 * 2 1 4 4 H 1.48500 * 109.47526 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47032 * 300.00146 * 3 2 1 6 6 H 1.48503 * 109.47205 * 59.99999 * 3 2 1 7 7 C 1.37877 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00083 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99880 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47237 * 179.97438 * 9 7 2 11 11 C 1.47012 * 110.99850 * 293.94905 * 10 9 7 12 12 C 1.53094 * 109.25795 * 177.60498 * 11 10 9 13 13 O 1.43011 * 109.25780 * 56.85277 * 12 11 10 14 14 C 1.43016 * 113.73811 * 301.32582 * 13 12 11 15 15 H 1.09002 * 109.50761 * 298.73685 * 14 13 12 16 16 C 1.52996 * 109.50675 * 178.64818 * 14 13 12 17 17 C 1.53006 * 109.47166 * 65.09035 * 16 14 13 18 18 C 1.50700 * 109.47012 * 179.97438 * 17 16 14 19 19 C 1.38235 * 119.99928 * 269.72282 * 18 17 16 20 20 C 1.38239 * 119.99942 * 179.76664 * 19 18 17 21 21 C 1.38232 * 119.99828 * 0.48726 * 20 19 18 22 22 C 1.38234 * 119.99984 * 359.79234 * 21 20 19 23 23 C 1.38233 * 120.00372 * 359.95035 * 22 21 20 24 24 C 1.47016 * 111.00220 * 170.31621 * 10 9 7 25 25 H 0.97002 * 119.99979 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47471 * 59.99414 * 9 7 2 27 27 H 1.09005 * 109.47208 * 299.99659 * 9 7 2 28 28 H 1.09005 * 109.50656 * 57.67313 * 11 10 9 29 29 H 1.08996 * 109.51204 * 297.54393 * 11 10 9 30 30 H 1.09000 * 109.50980 * 296.91481 * 12 11 10 31 31 H 1.09004 * 109.50663 * 176.78601 * 12 11 10 32 32 H 1.09001 * 109.47257 * 185.08649 * 16 14 13 33 33 H 1.09001 * 109.47201 * 305.08937 * 16 14 13 34 34 H 1.09001 * 109.46718 * 299.99944 * 17 16 14 35 35 H 1.09001 * 109.47141 * 59.99865 * 17 16 14 36 36 H 1.08004 * 120.00101 * 0.02562 * 19 18 17 37 37 H 1.07997 * 119.99847 * 180.25851 * 20 19 18 38 38 H 1.08004 * 119.99948 * 179.76571 * 21 20 19 39 39 H 1.07998 * 119.99815 * 179.97438 * 22 21 20 40 40 H 1.07995 * 120.00134 * 179.97438 * 23 22 21 41 41 H 1.08996 * 109.50334 * 62.45749 * 24 10 9 42 42 H 1.09003 * 109.50348 * 302.32642 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 2.9714 -3.6542 -1.2538 12 6 3.9927 -4.7927 -1.1872 13 8 3.3109 -6.0235 -0.9312 14 6 2.5554 -6.0215 0.2831 15 1 3.2251 -5.8616 1.1281 16 6 1.8425 -7.3657 0.4435 17 6 2.8807 -8.4761 0.6173 18 6 2.1784 -9.8000 0.7759 19 6 1.8317 -10.2519 2.0355 20 6 1.1832 -11.4641 2.1806 21 6 0.8904 -12.2289 1.0670 22 6 1.2423 -11.7797 -0.1920 23 6 1.8860 -10.5651 -0.3377 24 6 1.5196 -4.8954 0.2314 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 3.4915 -2.7062 -1.3919 29 1 2.2925 -3.8226 -2.0898 30 1 4.7041 -4.5970 -0.3849 31 1 4.5236 -4.8614 -2.1367 32 1 1.1964 -7.3319 1.3207 33 1 1.2411 -7.5661 -0.4432 34 1 3.5268 -8.5099 -0.2599 35 1 3.4821 -8.2757 1.5040 36 1 2.0638 -9.6560 2.9058 37 1 0.9086 -11.8152 3.1643 38 1 0.3871 -13.1778 1.1807 39 1 1.0139 -12.3774 -1.0620 40 1 2.1613 -10.2143 -1.3213 41 1 0.8175 -5.0836 -0.5808 42 1 0.9799 -4.8535 1.1775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273408708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:08:49 Heat of formation + Delta-G solvation = -31.842608 kcal Electronic energy + Delta-G solvation = -20657.848276 eV Core-core repulsion = 17601.993708 eV Total energy + Delta-G solvation = -3055.854568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.55534 -38.96532 -35.34472 -34.42787 -32.48108 -31.44521 -31.00693 -28.68780 -27.97783 -25.44780 -23.74989 -22.70094 -22.66821 -21.25888 -20.64120 -19.68943 -16.89554 -16.46469 -16.10319 -15.77082 -15.22545 -15.16273 -14.53471 -14.45129 -14.29547 -13.87910 -13.58566 -13.25203 -13.11802 -13.02443 -12.85779 -12.13375 -11.92570 -11.77796 -11.33112 -11.27472 -11.07933 -10.85486 -10.84336 -10.77010 -10.69635 -10.54050 -10.16795 -9.85516 -9.36251 -9.04804 -9.00052 -8.73082 -8.47271 -7.32812 -6.06153 -4.07965 1.23944 1.27425 3.28664 3.36079 3.40630 3.65857 4.07974 4.38094 4.59984 4.73321 4.83393 4.90620 5.00480 5.11940 5.20401 5.29889 5.35742 5.43876 5.45768 5.58390 5.60821 5.71480 5.75272 5.81281 5.88639 5.94970 6.00925 6.05963 6.08343 6.23160 6.34835 6.37914 6.41372 6.52164 6.58061 6.60575 6.89512 7.20660 7.29235 7.55417 7.74705 8.01923 8.12251 8.48471 8.99484 9.56479 11.04839 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038961 B = 0.002978 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.501836 B = 9400.573460 C = 9744.225304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.028 3.972 12 C 0.064 3.936 13 O -0.388 6.388 14 C 0.096 3.904 15 H 0.063 0.937 16 C -0.103 4.103 17 C -0.079 4.079 18 C -0.075 4.075 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.117 4.117 24 C 0.025 3.975 25 H 0.261 0.739 26 H -0.009 1.009 27 H 0.031 0.969 28 H 0.091 0.909 29 H 0.029 0.971 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.030 0.970 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.203 -21.187 1.096 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.261 5.261 11 C -0.101 4.101 12 C -0.012 4.012 13 O -0.308 6.308 14 C 0.038 3.962 15 H 0.081 0.919 16 C -0.140 4.140 17 C -0.116 4.116 18 C -0.075 4.075 19 C -0.137 4.137 20 C -0.138 4.138 21 C -0.149 4.149 22 C -0.138 4.138 23 C -0.135 4.135 24 C -0.104 4.104 25 H 0.071 0.929 26 H 0.009 0.991 27 H 0.049 0.951 28 H 0.110 0.890 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.048 0.952 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.385 -21.133 1.362 21.626 hybrid contribution -0.379 1.121 -0.498 1.284 sum 4.006 -20.011 0.864 20.427 Atomic orbital electron populations 1.69972 1.06088 1.26732 1.50963 1.25003 0.94883 0.99382 0.95392 0.86431 0.80043 0.83344 0.77543 1.19645 1.21079 1.20967 1.21176 0.93497 0.89877 1.50121 0.91815 1.19743 0.90032 0.87258 0.96177 1.62362 1.28076 1.02586 1.33054 1.22615 0.96603 0.99332 0.91526 1.22698 0.94152 0.83740 1.00659 1.87866 1.65722 1.35464 1.41712 1.22154 0.92717 0.93936 0.87429 0.91896 1.21556 0.97551 0.92256 1.02686 1.20597 0.97422 0.90375 1.03190 1.20034 0.98066 0.96277 0.93130 1.21109 0.99203 0.96385 0.97033 1.21138 0.99015 0.95041 0.98622 1.21115 1.00935 0.99956 0.92866 1.21146 0.98893 0.96445 0.97327 1.21120 0.99156 0.94630 0.98589 1.22690 0.95633 0.90994 1.01133 0.92926 0.99071 0.95102 0.89034 0.95319 0.92835 0.89360 0.90495 0.91145 0.90129 0.91071 0.86042 0.86274 0.86421 0.86285 0.85989 0.95152 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.51 -14.27 8.48 -34.44 -0.29 -14.57 16 8 H 0.06 1.76 7.11 -52.49 -0.37 1.39 16 9 C 0.19 5.09 4.72 -4.97 -0.02 5.06 16 10 N -0.54 -11.77 4.72 -235.75 -1.11 -12.88 16 11 C 0.03 0.55 5.46 -3.71 -0.02 0.53 16 12 C 0.06 1.04 7.01 37.21 0.26 1.30 16 13 O -0.39 -6.35 10.01 -35.23 -0.35 -6.70 16 14 C 0.10 1.48 2.80 -26.68 -0.07 1.40 16 15 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 16 C -0.10 -1.29 4.91 -26.73 -0.13 -1.42 16 17 C -0.08 -0.87 5.24 -27.88 -0.15 -1.02 16 18 C -0.08 -0.82 5.13 -104.62 -0.54 -1.35 16 19 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16 20 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 21 C -0.13 -1.18 10.05 -39.59 -0.40 -1.58 16 22 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 23 C -0.12 -1.23 9.70 -39.58 -0.38 -1.61 16 24 C 0.02 0.46 4.93 -3.71 -0.02 0.44 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 27 H 0.03 0.87 8.04 -51.93 -0.42 0.45 16 28 H 0.09 1.90 6.80 -51.93 -0.35 1.54 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 0.94 7.77 -51.93 -0.40 0.54 16 35 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 36 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 LS Contribution 342.18 15.07 5.16 5.16 Total: -1.00 -30.69 342.18 -10.65 -41.35 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.02 Total: -1.43 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -3.04 Total: -16.01 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: -0.38 Total: -38.90 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.35 Total: -6.70 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.69 -10.65 -41.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273408708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.503 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds