Wall clock time and date at job start Mon Mar 30 2020 20:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00276 * 2 1 4 4 H 1.48500 * 109.47526 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47032 * 300.00146 * 3 2 1 6 6 H 1.48503 * 109.47205 * 59.99999 * 3 2 1 7 7 C 1.37877 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00083 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99880 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47237 * 179.97438 * 9 7 2 11 11 C 1.47012 * 110.99850 * 293.94905 * 10 9 7 12 12 C 1.53094 * 109.25795 * 177.60498 * 11 10 9 13 13 O 1.43011 * 109.25780 * 56.85277 * 12 11 10 14 14 C 1.43016 * 113.73811 * 301.32582 * 13 12 11 15 15 H 1.09002 * 109.50761 * 298.73685 * 14 13 12 16 16 C 1.52996 * 109.50675 * 178.64818 * 14 13 12 17 17 C 1.53006 * 109.47166 * 65.09035 * 16 14 13 18 18 C 1.50700 * 109.47012 * 179.97438 * 17 16 14 19 19 C 1.38235 * 119.99928 * 269.72282 * 18 17 16 20 20 C 1.38239 * 119.99942 * 179.76664 * 19 18 17 21 21 C 1.38232 * 119.99828 * 0.48726 * 20 19 18 22 22 C 1.38234 * 119.99984 * 359.79234 * 21 20 19 23 23 C 1.38233 * 120.00372 * 359.95035 * 22 21 20 24 24 C 1.47016 * 111.00220 * 170.31621 * 10 9 7 25 25 H 0.97002 * 119.99979 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47471 * 59.99414 * 9 7 2 27 27 H 1.09005 * 109.47208 * 299.99659 * 9 7 2 28 28 H 1.09005 * 109.50656 * 57.67313 * 11 10 9 29 29 H 1.08996 * 109.51204 * 297.54393 * 11 10 9 30 30 H 1.09000 * 109.50980 * 296.91481 * 12 11 10 31 31 H 1.09004 * 109.50663 * 176.78601 * 12 11 10 32 32 H 1.09001 * 109.47257 * 185.08649 * 16 14 13 33 33 H 1.09001 * 109.47201 * 305.08937 * 16 14 13 34 34 H 1.09001 * 109.46718 * 299.99944 * 17 16 14 35 35 H 1.09001 * 109.47141 * 59.99865 * 17 16 14 36 36 H 1.08004 * 120.00101 * 0.02562 * 19 18 17 37 37 H 1.07997 * 119.99847 * 180.25851 * 20 19 18 38 38 H 1.08004 * 119.99948 * 179.76571 * 21 20 19 39 39 H 1.07998 * 119.99815 * 179.97438 * 22 21 20 40 40 H 1.07995 * 120.00134 * 179.97438 * 23 22 21 41 41 H 1.08996 * 109.50334 * 62.45749 * 24 10 9 42 42 H 1.09003 * 109.50348 * 302.32642 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 2.9714 -3.6542 -1.2538 12 6 3.9927 -4.7927 -1.1872 13 8 3.3109 -6.0235 -0.9312 14 6 2.5554 -6.0215 0.2831 15 1 3.2251 -5.8616 1.1281 16 6 1.8425 -7.3657 0.4435 17 6 2.8807 -8.4761 0.6173 18 6 2.1784 -9.8000 0.7759 19 6 1.8317 -10.2519 2.0355 20 6 1.1832 -11.4641 2.1806 21 6 0.8904 -12.2289 1.0670 22 6 1.2423 -11.7797 -0.1920 23 6 1.8860 -10.5651 -0.3377 24 6 1.5196 -4.8954 0.2314 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 3.4915 -2.7062 -1.3919 29 1 2.2925 -3.8226 -2.0898 30 1 4.7041 -4.5970 -0.3849 31 1 4.5236 -4.8614 -2.1367 32 1 1.1964 -7.3319 1.3207 33 1 1.2411 -7.5661 -0.4432 34 1 3.5268 -8.5099 -0.2599 35 1 3.4821 -8.2757 1.5040 36 1 2.0638 -9.6560 2.9058 37 1 0.9086 -11.8152 3.1643 38 1 0.3871 -13.1778 1.1807 39 1 1.0139 -12.3774 -1.0620 40 1 2.1613 -10.2143 -1.3213 41 1 0.8175 -5.0836 -0.5808 42 1 0.9799 -4.8535 1.1775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273408708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:08:48 Heat of formation + Delta-G solvation = -49.594062 kcal Electronic energy + Delta-G solvation = -20658.618037 eV Core-core repulsion = 17601.993708 eV Total energy + Delta-G solvation = -3056.624329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.69505 -39.99568 -36.98540 -35.48448 -34.57657 -32.54775 -31.71096 -30.21216 -29.49296 -27.04024 -25.09116 -24.31224 -23.39767 -22.60692 -21.62581 -21.20409 -18.57979 -17.62494 -17.41960 -17.24419 -16.40641 -16.10975 -16.01872 -15.91996 -15.70665 -15.44094 -14.68395 -14.34744 -14.19822 -14.10438 -14.01254 -13.83683 -13.37325 -13.01373 -12.82859 -12.69016 -12.62606 -12.42342 -12.20637 -12.07647 -12.02463 -11.76247 -11.61199 -11.40192 -11.22981 -10.66733 -10.47868 -9.76827 -9.53079 -9.16722 -8.24472 -6.35486 0.50277 0.55308 1.39996 1.40628 1.54433 2.37641 2.80919 2.91145 3.07374 3.15865 3.75606 3.91908 4.00469 4.14446 4.18601 4.21136 4.25651 4.29854 4.36136 4.37707 4.54557 4.62650 4.64730 4.70842 4.71835 4.79361 4.91605 4.93886 5.00021 5.10295 5.14105 5.18045 5.20572 5.27094 5.36798 5.59517 5.63591 5.67680 5.81232 5.97063 6.17846 6.19002 6.24485 6.50406 6.79876 7.34625 8.87322 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038961 B = 0.002978 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.501836 B = 9400.573460 C = 9744.225304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.973 3.027 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.524 4.524 8 H 0.066 0.934 9 C 0.208 3.792 10 N -0.542 5.542 11 C 0.027 3.973 12 C 0.073 3.927 13 O -0.390 6.390 14 C 0.104 3.896 15 H 0.070 0.930 16 C -0.094 4.094 17 C -0.069 4.069 18 C -0.090 4.090 19 C -0.130 4.130 20 C -0.127 4.127 21 C -0.135 4.135 22 C -0.128 4.128 23 C -0.133 4.133 24 C 0.022 3.978 25 H 0.265 0.735 26 H -0.042 1.042 27 H 0.005 0.995 28 H 0.079 0.921 29 H 0.015 0.985 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.124 0.876 41 H 0.018 0.982 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.580 -22.188 1.491 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.084 0.916 9 C 0.081 3.919 10 N -0.267 5.267 11 C -0.102 4.102 12 C -0.004 4.004 13 O -0.309 6.309 14 C 0.046 3.954 15 H 0.088 0.912 16 C -0.132 4.132 17 C -0.106 4.106 18 C -0.090 4.090 19 C -0.148 4.148 20 C -0.145 4.145 21 C -0.153 4.153 22 C -0.146 4.146 23 C -0.151 4.151 24 C -0.106 4.106 25 H 0.074 0.926 26 H -0.024 1.024 27 H 0.023 0.977 28 H 0.098 0.902 29 H 0.033 0.967 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.142 0.858 41 H 0.036 0.964 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.776 -22.161 1.754 22.969 hybrid contribution -0.869 1.363 -0.622 1.732 sum 4.907 -20.799 1.132 21.400 Atomic orbital electron populations 1.70102 1.07868 1.27986 1.51645 1.25974 0.95780 1.03419 0.94634 0.85271 0.79003 0.78212 0.77753 1.18460 1.20395 1.20326 1.21465 0.93702 0.90816 1.50262 0.91594 1.19398 0.90090 0.89046 0.93325 1.62298 1.27182 1.02825 1.34349 1.22687 0.96870 1.00664 0.89967 1.22730 0.92894 0.81993 1.02753 1.87886 1.65658 1.35278 1.42081 1.22174 0.91865 0.93962 0.87399 0.91230 1.21495 0.97771 0.91163 1.02754 1.20472 0.96810 0.90027 1.03293 1.20062 0.98936 0.96315 0.93727 1.21327 0.99370 0.97028 0.97116 1.21454 0.98517 0.94744 0.99794 1.21460 1.00478 1.00773 0.92613 1.21428 0.98514 0.96293 0.98388 1.21293 0.99741 0.95312 0.98717 1.22828 0.96534 0.90595 1.00675 0.92596 1.02418 0.97686 0.90237 0.96703 0.91928 0.86230 0.89562 0.91927 0.90720 0.90214 0.85028 0.84288 0.84238 0.84546 0.85811 0.96352 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.91 13.29 21.45 0.28 -56.63 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.52 -30.01 8.48 25.60 0.22 -29.80 16 8 H 0.07 3.67 7.11 -2.91 -0.02 3.65 16 9 C 0.21 11.42 4.72 85.56 0.40 11.83 16 10 N -0.54 -24.30 4.72 -899.77 -4.25 -28.55 16 11 C 0.03 1.06 5.46 86.31 0.47 1.53 16 12 C 0.07 2.22 7.01 72.01 0.50 2.73 16 13 O -0.39 -12.15 10.01 -148.98 -1.49 -13.64 16 14 C 0.10 3.11 2.80 30.63 0.09 3.19 16 15 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 16 C -0.09 -2.27 4.91 30.59 0.15 -2.12 16 17 C -0.07 -1.43 5.24 29.85 0.16 -1.28 16 18 C -0.09 -1.86 5.13 -19.87 -0.10 -1.96 16 19 C -0.13 -2.44 9.70 22.27 0.22 -2.22 16 20 C -0.13 -2.11 10.05 22.27 0.22 -1.88 16 21 C -0.14 -2.17 10.05 22.27 0.22 -1.94 16 22 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 23 C -0.13 -2.65 9.70 22.27 0.22 -2.43 16 24 C 0.02 0.84 4.93 86.31 0.43 1.27 16 25 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 26 H -0.04 -2.53 8.12 -2.39 -0.02 -2.55 16 27 H 0.01 0.30 8.04 -2.38 -0.02 0.28 16 28 H 0.08 3.32 6.80 -2.38 -0.02 3.31 16 29 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.64 7.77 -2.39 -0.02 1.63 16 35 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 36 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 37 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 39 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 40 H 0.12 2.31 8.06 -2.91 -0.02 2.29 16 41 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 2.86 8.09 -2.39 -0.02 2.84 16 Total: -1.00 -66.63 342.18 1.42 -65.21 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.96 Total: 11.97 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 3.88 Total: -24.64 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -3.96 Total: -85.17 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -1.49 Total: -13.64 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -66.63 1.42 -65.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273408708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.619 kcal (2) G-P(sol) polarization free energy of solvation -66.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds