Wall clock time and date at job start Mon Mar 30 2020 20:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99682 * 2 1 4 4 H 1.48497 * 109.47031 * 272.67004 * 3 2 1 5 5 H 1.48508 * 109.46845 * 32.66466 * 3 2 1 6 6 H 1.48490 * 109.47384 * 152.66573 * 3 2 1 7 7 C 1.37874 * 120.00647 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99485 * 351.08898 * 7 2 1 9 9 C 1.50699 * 119.99885 * 171.35496 * 7 2 1 10 10 C 1.52998 * 115.55440 * 294.32687 * 9 7 2 11 11 N 1.46903 * 109.47160 * 299.26923 * 10 9 7 12 12 C 1.46900 * 111.00216 * 183.71247 * 11 10 9 13 13 C 1.50700 * 109.47105 * 185.25516 * 12 11 10 14 14 C 1.32568 * 119.99593 * 124.08390 * 13 12 11 15 15 C 1.47819 * 120.00210 * 16.02878 * 14 13 12 16 16 C 1.39556 * 120.12728 * 41.13644 * 15 14 13 17 17 C 1.37965 * 119.90282 * 180.02562 * 16 15 14 18 18 C 1.38319 * 120.17218 * 359.97321 * 17 16 15 19 19 C 1.38548 * 120.26322 * 0.02562 * 18 17 16 20 20 F 1.35091 * 119.95669 * 180.02562 * 19 18 17 21 21 C 1.38225 * 120.08501 * 359.72261 * 19 18 17 22 22 C 1.53001 * 117.49713 * 148.65780 * 9 7 2 23 23 C 1.53003 * 117.49838 * 80.00161 * 9 7 2 24 24 H 0.96994 * 120.00687 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46932 * 59.26863 * 10 9 7 26 26 H 1.09002 * 109.47287 * 179.26783 * 10 9 7 27 27 H 1.00903 * 111.00011 * 307.66674 * 11 10 9 28 28 H 1.08998 * 109.46533 * 305.25527 * 12 11 10 29 29 H 1.08996 * 109.46936 * 65.25331 * 12 11 10 30 30 H 1.07997 * 120.00211 * 304.08369 * 13 12 11 31 31 H 1.07999 * 119.99830 * 196.02743 * 14 13 12 32 32 H 1.07999 * 120.04675 * 359.97438 * 16 15 14 33 33 H 1.08006 * 119.90868 * 180.02562 * 17 16 15 34 34 H 1.08005 * 119.86941 * 180.02562 * 18 17 16 35 35 H 1.08001 * 120.08370 * 180.29436 * 21 19 18 36 36 H 1.09009 * 117.49531 * 359.97438 * 22 9 7 37 37 H 1.08998 * 117.50268 * 145.01811 * 22 9 7 38 38 H 1.09001 * 117.49873 * 214.97867 * 23 9 7 39 39 H 1.09001 * 117.49651 * 359.97122 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4401 2.0791 -1.3985 5 1 1.4757 2.6358 0.7557 6 1 3.5737 1.4248 0.6428 7 6 2.0047 -1.1939 0.0005 8 1 1.4745 -2.1235 0.1458 9 6 3.4988 -1.2013 -0.1956 10 6 3.9866 -0.7326 -1.5680 11 7 3.4425 -1.6151 -2.6087 12 6 3.9607 -1.2487 -3.9335 13 6 3.2849 -2.0880 -4.9870 14 6 2.6479 -1.5035 -5.9921 15 6 2.8867 -0.0750 -6.2877 16 6 4.1800 0.4460 -6.2279 17 6 4.3976 1.7800 -6.5042 18 6 3.3374 2.6022 -6.8407 19 6 2.0506 2.0924 -6.9021 20 9 1.0197 2.9008 -7.2319 21 6 1.8210 0.7562 -6.6325 22 6 4.2970 -2.3071 0.4979 23 6 4.3720 -0.8687 1.0159 24 1 -0.4851 0.8399 -0.0004 25 1 3.6486 0.2886 -1.7444 26 1 5.0758 -0.7650 -1.5970 27 1 3.6364 -2.5831 -2.3997 28 1 3.7586 -0.1946 -4.1238 29 1 5.0361 -1.4237 -3.9642 30 1 3.3194 -3.1655 -4.9232 31 1 1.9545 -2.0711 -6.5949 32 1 5.0092 -0.1941 -5.9650 33 1 5.3985 2.1832 -6.4584 34 1 3.5133 3.6457 -7.0565 35 1 0.8186 0.3578 -6.6850 36 1 3.7413 -3.0291 1.0965 37 1 5.1697 -2.7005 -0.0233 38 1 5.2941 -0.3162 0.8352 39 1 3.8657 -0.6441 1.9547 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886102417.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:06:44 Heat of formation + Delta-G solvation = 9.046451 kcal Electronic energy + Delta-G solvation = -20603.920507 eV Core-core repulsion = 17426.378717 eV Total energy + Delta-G solvation = -3177.541790 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.95995 -40.25507 -39.06765 -36.86151 -34.40807 -34.12887 -31.81580 -30.57769 -28.38829 -27.13102 -24.82535 -23.86141 -23.35507 -22.96139 -20.94865 -20.26604 -18.41760 -17.79710 -17.41642 -17.19993 -17.00984 -16.68300 -16.20015 -16.12574 -15.50093 -15.09496 -14.93657 -14.76612 -14.55956 -14.24794 -14.08704 -13.49543 -13.29635 -13.08507 -12.91433 -12.70649 -12.45687 -12.41846 -12.11156 -12.00323 -11.73558 -11.30516 -10.91644 -10.73347 -10.50331 -10.22937 -9.82532 -9.32904 -8.96367 -8.20258 -6.19289 -0.07762 0.18883 1.30572 1.34350 1.38478 1.50569 2.42800 2.64469 3.04646 3.23382 3.33389 3.66103 3.70412 3.85302 4.05812 4.10728 4.18472 4.20870 4.37252 4.38709 4.42345 4.51017 4.56137 4.63830 4.82710 4.90211 4.93045 4.93718 5.08743 5.09132 5.14653 5.27384 5.38519 5.41542 5.55314 5.59311 5.79470 5.80839 5.92786 6.31921 6.41314 6.72727 6.83935 7.45608 8.96285 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016421 B = 0.005407 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.677674 B = 5177.070348 C = 5900.437708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.022 3.978 3 Si 0.925 3.075 4 H -0.284 1.284 5 H -0.303 1.303 6 H -0.218 1.218 7 C -0.453 4.453 8 H 0.027 0.973 9 C -0.029 4.029 10 C 0.108 3.892 11 N -0.684 5.684 12 C 0.077 3.923 13 C -0.115 4.115 14 C -0.137 4.137 15 C -0.031 4.031 16 C -0.123 4.123 17 C -0.089 4.089 18 C -0.163 4.163 19 C 0.073 3.927 20 F -0.152 7.152 21 C -0.165 4.165 22 C -0.164 4.164 23 C -0.189 4.189 24 H 0.259 0.741 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.344 0.656 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.149 0.851 33 H 0.166 0.834 34 H 0.153 0.847 35 H 0.133 0.867 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.878 0.704 -14.507 20.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.174 4.174 3 Si 0.751 3.249 4 H -0.211 1.211 5 H -0.231 1.231 6 H -0.140 1.140 7 C -0.491 4.491 8 H 0.045 0.955 9 C -0.030 4.030 10 C -0.021 4.021 11 N -0.315 5.315 12 C -0.051 4.051 13 C -0.134 4.134 14 C -0.156 4.156 15 C -0.031 4.031 16 C -0.141 4.141 17 C -0.106 4.106 18 C -0.181 4.181 19 C 0.054 3.946 20 F -0.131 7.131 21 C -0.184 4.184 22 C -0.201 4.201 23 C -0.227 4.227 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.163 0.837 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.184 0.816 34 H 0.171 0.829 35 H 0.151 0.849 36 H 0.093 0.907 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.126 1.204 -14.574 19.650 hybrid contribution -0.192 0.660 0.181 0.710 sum 12.934 1.864 -14.393 19.440 Atomic orbital electron populations 1.70074 1.08338 1.27339 1.53671 1.25631 0.94939 1.02466 0.94387 0.86105 0.81471 0.79438 0.77876 1.21076 1.23067 1.14046 1.20267 0.90093 0.92280 1.46410 0.95521 1.19383 0.91812 1.01738 0.90048 1.21430 0.94672 0.95478 0.90486 1.60062 1.63506 1.07322 1.00642 1.21268 0.96805 0.98944 0.88044 1.23305 0.96550 1.00396 0.93100 1.21710 1.00683 0.91966 1.01255 1.19149 0.92967 0.94168 0.96823 1.21708 0.96304 0.96378 0.99746 1.21338 0.99950 0.92867 0.96468 1.21481 0.90701 1.02419 1.03542 1.17948 0.85160 0.88752 1.02731 1.91457 1.58298 1.72974 1.90360 1.21441 1.00911 0.92481 1.03582 1.22838 1.01802 0.91156 1.04261 1.23071 1.01553 0.98904 0.99147 0.93246 0.94419 0.94434 0.83670 0.91807 0.92841 0.84641 0.84225 0.83366 0.81610 0.82949 0.84878 0.90696 0.87744 0.88626 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.59 13.96 21.45 0.30 -61.29 16 2 C 0.02 1.31 5.46 84.65 0.46 1.77 16 3 Si 0.92 45.46 25.15 68.60 1.73 47.19 16 4 H -0.28 -13.99 6.99 99.48 0.70 -13.29 16 5 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 6 H -0.22 -9.42 5.63 99.48 0.56 -8.86 16 7 C -0.45 -25.63 9.20 25.60 0.24 -25.39 16 8 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 9 C -0.03 -1.26 0.95 -52.93 -0.05 -1.31 16 10 C 0.11 4.21 5.20 86.30 0.45 4.66 16 11 N -0.68 -24.89 6.31 -517.94 -3.27 -28.16 16 12 C 0.08 2.19 4.67 85.56 0.40 2.59 16 13 C -0.12 -2.83 9.63 24.53 0.24 -2.60 16 14 C -0.14 -3.35 9.75 23.66 0.23 -3.12 16 15 C -0.03 -0.80 4.88 -20.12 -0.10 -0.90 16 16 C -0.12 -2.68 7.60 22.52 0.17 -2.51 16 17 C -0.09 -1.72 10.03 22.22 0.22 -1.50 16 18 C -0.16 -3.68 10.02 22.36 0.22 -3.45 16 19 C 0.07 2.04 7.29 22.34 0.16 2.21 16 20 F -0.15 -4.53 17.26 44.97 0.78 -3.75 16 21 C -0.17 -4.69 9.76 22.57 0.22 -4.47 16 22 C -0.16 -5.93 9.95 30.62 0.30 -5.62 16 23 C -0.19 -7.25 7.86 30.62 0.24 -7.01 16 24 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 25 H 0.04 1.64 5.28 -2.39 -0.01 1.63 16 26 H 0.04 1.21 8.11 -2.39 -0.02 1.20 16 27 H 0.34 11.43 8.73 -89.69 -0.78 10.65 16 28 H 0.06 2.03 5.43 -2.39 -0.01 2.01 16 29 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 30 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 32 H 0.15 2.60 7.08 -2.91 -0.02 2.57 16 33 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 35 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.07 2.85 8.14 -2.38 -0.02 2.83 16 37 H 0.10 3.04 8.14 -2.39 -0.02 3.03 16 38 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 39 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -70.28 326.65 3.05 -67.23 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.11 Total: 25.44 kcal Atomic # 6 Polarization: -50.07 SS G_CDS: 3.41 Total: -46.66 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -2.97 Total: -89.45 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.78 Total: -3.75 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.73 Total: 47.19 kcal Total: -70.28 3.05 -67.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886102417.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.279 kcal (2) G-P(sol) polarization free energy of solvation -70.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds