Wall clock time and date at job start Mon Mar 30 2020 20:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00232 * 2 1 4 4 H 1.48500 * 109.46844 * 269.99954 * 3 2 1 5 5 H 1.48504 * 109.46778 * 29.99193 * 3 2 1 6 6 H 1.48491 * 109.47192 * 149.99624 * 3 2 1 7 7 C 1.37877 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00264 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00048 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46985 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47012 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46950 * 179.97438 * 11 10 9 13 13 O 1.21281 * 120.00166 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99425 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00357 * 4.72832 * 14 12 11 16 16 C 1.53001 * 109.46843 * 269.99932 * 15 14 12 17 17 F 1.39901 * 109.47145 * 299.99798 * 16 15 14 18 18 F 1.39895 * 109.47226 * 59.99743 * 16 15 14 19 19 C 1.46506 * 119.99469 * 184.72806 * 14 12 11 20 20 C 1.53773 * 113.61508 * 43.68188 * 19 14 12 21 21 C 1.53948 * 87.02024 * 220.04607 * 20 19 14 22 22 C 1.53775 * 113.61235 * 306.07469 * 19 14 12 23 23 H 0.96996 * 119.99996 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46412 * 60.00850 * 9 7 2 25 25 H 1.08997 * 109.47449 * 300.00766 * 9 7 2 26 26 H 1.09000 * 109.47187 * 60.00359 * 10 9 7 27 27 H 1.09004 * 109.47185 * 300.00036 * 10 9 7 28 28 H 1.08997 * 109.46750 * 60.00171 * 11 10 9 29 29 H 1.08997 * 109.47084 * 300.00103 * 11 10 9 30 30 H 1.08995 * 109.47026 * 29.99578 * 15 14 12 31 31 H 1.09003 * 109.46887 * 150.00132 * 15 14 12 32 32 H 1.09001 * 109.46714 * 180.02562 * 16 15 14 33 33 H 1.09003 * 112.84339 * 174.88238 * 19 14 12 34 34 H 1.09000 * 113.61755 * 334.56660 * 20 19 14 35 35 H 1.09003 * 113.61175 * 105.47215 * 20 19 14 36 36 H 1.09003 * 113.54592 * 270.81219 * 21 20 19 37 37 H 1.09003 * 113.66625 * 139.93207 * 21 20 19 38 38 H 1.09001 * 113.61861 * 254.52804 * 22 19 14 39 39 H 1.08999 * 113.61796 * 25.34998 * 22 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5516 -2.6366 0.0001 12 6 6.0538 -4.0575 0.0009 13 8 5.2657 -4.9793 0.0009 14 7 7.3789 -4.3037 0.0005 15 6 8.3302 -3.1943 0.1040 16 6 8.6825 -2.6923 -1.2977 17 9 9.2580 -3.7328 -2.0348 18 9 7.5209 -2.2520 -1.9410 19 6 7.8680 -5.6808 -0.1033 20 6 7.1275 -6.5195 -1.1582 21 6 7.1882 -7.6867 -0.1562 22 6 7.2749 -6.6265 0.9543 23 1 -0.4850 0.8400 -0.0004 24 1 3.8751 -0.6798 0.8895 25 1 3.8746 -0.6807 -0.8904 26 1 3.6579 -3.1506 -0.8897 27 1 3.6585 -3.1502 0.8903 28 1 5.9148 -2.1227 0.8901 29 1 5.9149 -2.1228 -0.8898 30 1 7.8819 -2.3836 0.6783 31 1 9.2353 -3.5374 0.6052 32 1 9.3906 -1.8672 -1.2207 33 1 8.9536 -5.7395 -0.1820 34 1 6.1150 -6.1707 -1.3614 35 1 7.7072 -6.6910 -2.0652 36 1 8.0877 -8.2951 -0.2503 37 1 6.2755 -8.2816 -0.1216 38 1 7.9734 -6.8842 1.7505 39 1 6.3035 -6.3061 1.3309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895136048.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:07:36 Heat of formation + Delta-G solvation = -146.577997 kcal Electronic energy + Delta-G solvation = -22322.848463 eV Core-core repulsion = 18707.789066 eV Total energy + Delta-G solvation = -3615.059397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.82507 -47.87063 -41.59991 -38.61455 -36.24593 -36.03638 -34.06379 -30.43306 -30.16888 -26.72984 -26.56089 -24.85478 -24.21846 -22.13940 -21.01720 -19.84521 -18.92377 -18.57174 -18.24355 -18.03261 -17.24436 -17.04814 -16.33163 -16.26990 -15.80061 -15.21512 -14.89257 -14.81058 -14.74947 -14.28745 -14.10530 -13.89688 -13.74418 -13.46583 -13.34116 -13.26333 -12.83979 -12.62109 -12.47446 -12.28822 -12.02954 -11.75369 -11.69168 -11.46949 -11.42520 -11.32052 -11.31211 -10.75151 -10.40686 -9.66575 -8.27780 -6.33593 1.38229 1.42023 1.54094 1.58070 1.89908 2.39366 3.02467 3.07263 3.44409 3.49070 3.62748 3.74586 3.80345 3.95935 4.00656 4.06927 4.18527 4.22757 4.42247 4.52057 4.58724 4.77546 4.79492 4.91022 4.91788 4.97803 5.00831 5.03897 5.09575 5.17625 5.36463 5.53533 5.59130 5.67425 5.77421 6.28763 6.34292 6.74681 7.18547 7.30822 8.90047 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022470 B = 0.004743 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.806586 B = 5901.506702 C = 6785.523394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.003 4.003 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.234 1.234 7 C -0.540 4.540 8 H 0.018 0.982 9 C -0.007 4.007 10 C -0.077 4.077 11 C -0.147 4.147 12 C 0.515 3.485 13 O -0.564 6.564 14 N -0.606 5.606 15 C 0.051 3.949 16 C 0.229 3.771 17 F -0.218 7.218 18 F -0.221 7.221 19 C 0.129 3.871 20 C -0.163 4.163 21 C -0.128 4.128 22 C -0.149 4.149 23 H 0.267 0.733 24 H 0.033 0.967 25 H 0.025 0.975 26 H 0.029 0.971 27 H 0.037 0.963 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.150 0.850 32 H 0.168 0.832 33 H 0.144 0.856 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.872 -6.285 1.064 29.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.198 4.198 3 Si 0.783 3.217 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.156 1.156 7 C -0.578 4.578 8 H 0.036 0.964 9 C -0.044 4.044 10 C -0.115 4.115 11 C -0.187 4.187 12 C 0.306 3.694 13 O -0.443 6.443 14 N -0.338 5.338 15 C -0.073 4.073 16 C 0.175 3.825 17 F -0.199 7.199 18 F -0.203 7.203 19 C 0.026 3.974 20 C -0.202 4.202 21 C -0.166 4.166 22 C -0.188 4.188 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.148 0.852 31 H 0.167 0.833 32 H 0.185 0.815 33 H 0.161 0.839 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 28.307 -6.692 1.043 29.106 hybrid contribution -0.994 0.328 -0.387 1.116 sum 27.313 -6.363 0.656 28.053 Atomic orbital electron populations 1.70109 1.08710 1.28307 1.52687 1.26200 0.95743 1.04132 0.93774 0.85500 0.79777 0.77013 0.79377 1.19071 1.21019 1.15632 1.21543 0.92655 0.92827 1.50790 0.96398 1.19522 0.93496 0.94221 0.97189 1.21003 0.93443 0.97167 0.99898 1.22086 0.96551 0.93419 1.06594 1.21098 0.82008 0.91966 0.74362 1.90626 1.56401 1.47477 1.49765 1.47916 1.05112 1.07815 1.72935 1.23261 0.97042 0.91882 0.95095 1.23252 0.83033 0.88794 0.87408 1.92955 1.84715 1.62207 1.80043 1.92889 1.52983 1.90062 1.84368 1.22868 0.99616 0.78532 0.96342 1.23365 1.01387 0.97509 0.97923 1.22644 1.02483 0.95785 0.95694 1.23265 1.01548 0.96506 0.97470 0.92481 0.94871 0.95685 0.95192 0.94455 0.86462 0.86348 0.85240 0.83256 0.81487 0.83892 0.91670 0.91122 0.87568 0.92661 0.89438 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.55 13.96 21.45 0.30 -62.25 16 2 C 0.00 -0.16 5.47 84.65 0.46 0.30 16 3 Si 0.96 44.33 27.47 68.60 1.88 46.21 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 6 H -0.23 -9.50 6.54 99.48 0.65 -8.85 16 7 C -0.54 -33.14 9.66 25.60 0.25 -32.89 16 8 H 0.02 1.23 7.99 -2.91 -0.02 1.21 16 9 C -0.01 -0.33 4.04 29.85 0.12 -0.21 16 10 C -0.08 -3.35 4.44 30.60 0.14 -3.22 16 11 C -0.15 -4.52 4.26 29.85 0.13 -4.39 16 12 C 0.52 15.99 6.82 87.66 0.60 16.59 16 13 O -0.56 -22.51 11.68 -3.03 -0.04 -22.55 16 14 N -0.61 -12.79 2.64 -794.90 -2.10 -14.89 16 15 C 0.05 0.52 5.59 86.38 0.48 1.00 16 16 C 0.23 2.73 5.60 71.98 0.40 3.14 16 17 F -0.22 -3.66 16.89 44.97 0.76 -2.90 16 18 F -0.22 -4.79 14.03 44.97 0.63 -4.16 16 19 C 0.13 2.52 4.01 45.51 0.18 2.70 16 20 C -0.16 -4.05 7.38 31.18 0.23 -3.82 16 21 C -0.13 -2.65 8.09 31.18 0.25 -2.40 16 22 C -0.15 -3.21 7.44 31.12 0.23 -2.98 16 23 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 24 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 25 H 0.02 1.14 7.57 -2.39 -0.02 1.12 16 26 H 0.03 1.44 8.10 -2.39 -0.02 1.42 16 27 H 0.04 1.74 8.10 -2.38 -0.02 1.72 16 28 H 0.12 2.79 7.26 -2.39 -0.02 2.77 16 29 H 0.12 3.40 5.19 -2.39 -0.01 3.38 16 30 H 0.13 0.97 6.47 -2.39 -0.02 0.95 16 31 H 0.15 0.37 8.04 -2.39 -0.02 0.35 16 32 H 0.17 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.14 1.77 8.04 -2.39 -0.02 1.75 16 34 H 0.06 2.22 5.70 -2.39 -0.01 2.20 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.87 6.24 -2.39 -0.01 1.86 16 Total: -1.00 -83.05 315.12 5.90 -77.15 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.99 Total: 9.56 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 3.47 Total: -26.18 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -1.80 Total: -77.15 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.04 Total: -22.55 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 1.39 Total: -7.05 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -83.05 5.90 -77.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895136048.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.424 kcal (2) G-P(sol) polarization free energy of solvation -83.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds