Wall clock time and date at job start Mon Mar 30 2020 20:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00157 * 2 1 4 4 C 1.52995 * 109.47354 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.47230 * 64.99741 * 4 3 2 6 6 C 1.42898 * 114.00186 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47319 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47346 * 305.00335 * 7 6 5 9 9 O 1.42904 * 109.47396 * 64.99884 * 7 6 5 10 10 C 1.52997 * 109.47504 * 185.00258 * 7 6 5 11 11 N 1.46898 * 109.47377 * 180.02562 * 10 7 6 12 12 C 1.47478 * 111.00240 * 74.02505 * 11 10 7 13 13 C 1.53517 * 87.93169 * 138.70266 * 12 11 10 14 14 O 1.42900 * 114.16674 * 87.62495 * 13 12 11 15 15 C 1.50701 * 114.34663 * 220.31784 * 13 12 11 16 16 H 1.07992 * 119.99863 * 93.92142 * 15 13 12 17 17 C 1.37875 * 119.99716 * 273.92937 * 15 13 12 18 18 N 1.31514 * 120.00545 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99832 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47332 * 59.99379 * 19 17 15 21 21 H 1.48499 * 109.47099 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46806 * 299.99559 * 19 17 15 23 23 C 1.47483 * 110.99979 * 169.99929 * 11 10 7 24 24 H 1.08997 * 109.47320 * 60.00223 * 1 2 3 25 25 H 1.09007 * 109.46742 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46934 * 300.00056 * 1 2 3 27 27 H 1.08999 * 109.47152 * 59.99569 * 3 2 1 28 28 H 1.09004 * 109.46598 * 299.99872 * 3 2 1 29 29 H 1.09001 * 109.47081 * 304.99950 * 4 3 2 30 30 H 1.08999 * 109.47384 * 184.99643 * 4 3 2 31 31 H 1.09002 * 109.47259 * 300.00293 * 6 5 4 32 32 H 1.09001 * 109.47074 * 60.00315 * 6 5 4 33 33 H 0.96708 * 113.99258 * 60.00195 * 9 7 6 34 34 H 1.09004 * 109.46881 * 300.00361 * 10 7 6 35 35 H 1.09002 * 109.47016 * 59.99741 * 10 7 6 36 36 H 1.08998 * 113.47864 * 253.46976 * 12 11 10 37 37 H 1.08999 * 113.47257 * 23.93946 * 12 11 10 38 38 H 0.96701 * 114.00031 * 86.16506 * 14 13 12 39 39 H 0.96998 * 120.00722 * 180.02562 * 18 17 15 40 40 H 1.08996 * 113.47793 * 336.06539 * 23 11 10 41 41 H 1.09001 * 113.47561 * 106.52689 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3822 0.4197 -1.3220 7 6 5.7268 -0.2340 -2.6617 8 1 5.1757 -1.1691 -2.7621 9 8 5.3679 0.6471 -3.7280 10 6 7.2289 -0.5186 -2.7190 11 7 7.5598 -1.1457 -4.0055 12 6 7.5208 -0.1584 -5.1004 13 6 8.7917 -0.8122 -5.6607 14 8 8.5451 -1.9105 -6.5412 15 6 9.8078 0.1633 -6.1963 16 1 10.6076 0.5134 -5.5606 17 6 9.7164 0.6088 -7.4979 18 7 8.7427 0.1822 -8.2722 19 14 10.9764 1.8175 -8.1620 20 1 12.3308 1.2136 -8.0838 21 1 10.6582 2.1367 -9.5769 22 1 10.9421 3.0625 -7.3533 23 6 9.0202 -1.2183 -4.1980 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 3.8507 0.5685 0.8427 30 1 3.9784 2.1765 0.0901 31 1 5.8632 1.3959 -1.2601 32 1 5.7362 -0.2121 -0.5074 33 1 5.8213 1.5009 -3.7021 34 1 7.7800 0.4165 -2.6186 35 1 7.5027 -1.1908 -1.9057 36 1 6.6535 -0.2663 -5.7517 37 1 7.6720 0.8677 -4.7652 38 1 8.4016 -1.6519 -7.4619 39 1 8.6786 0.4954 -9.1880 40 1 9.5716 -0.4751 -3.6221 41 1 9.4237 -2.2245 -4.0847 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118061622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:08:20 Heat of formation + Delta-G solvation = -149.671792 kcal Electronic energy + Delta-G solvation = -21860.207484 eV Core-core repulsion = 18356.101446 eV Total energy + Delta-G solvation = -3504.106039 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.161 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.47647 -38.60461 -37.59675 -36.18631 -34.05921 -32.01034 -31.31545 -30.11728 -27.60584 -26.47318 -25.39543 -24.77338 -22.77816 -22.54195 -21.02357 -18.57215 -17.43147 -17.06142 -16.94884 -16.30893 -16.00599 -15.60287 -15.22527 -15.02698 -14.95181 -14.64244 -14.04191 -13.83624 -13.57709 -13.02430 -12.73405 -12.33767 -12.25778 -11.96544 -11.84084 -11.66001 -11.39535 -11.30142 -11.09727 -10.83978 -10.72300 -10.52936 -10.37062 -9.96362 -9.93536 -9.73231 -9.51380 -9.20926 -8.60832 -8.11942 -7.80330 -6.22856 -4.32995 3.21932 3.27946 3.29735 3.42925 3.53432 4.26988 4.62364 4.70606 4.80250 4.92772 4.97624 5.04731 5.09881 5.13787 5.16574 5.23578 5.26361 5.37062 5.42018 5.44975 5.51362 5.57357 5.86520 6.02557 6.04348 6.32778 6.39173 6.47766 6.74480 6.88307 7.11055 7.17102 7.28771 7.41208 7.80411 7.96874 8.00531 8.09098 8.68425 9.36703 9.75078 10.82965 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032280 B = 0.003189 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.201844 B = 8777.979745 C = 8925.540705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.367 6.367 6 C 0.032 3.968 7 C 0.119 3.881 8 H 0.110 0.890 9 O -0.541 6.541 10 C -0.010 4.010 11 N -0.465 5.465 12 C -0.003 4.003 13 C 0.243 3.757 14 O -0.571 6.571 15 C -0.536 4.536 16 H 0.064 0.936 17 C 0.071 3.929 18 N -0.896 5.896 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.276 1.276 23 C 0.001 3.999 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.367 0.633 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.390 0.610 39 H 0.272 0.728 40 H 0.061 0.939 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.354 4.508 15.965 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.286 6.286 6 C -0.045 4.045 7 C 0.059 3.941 8 H 0.127 0.873 9 O -0.345 6.345 10 C -0.140 4.140 11 N -0.187 5.187 12 C -0.132 4.132 13 C 0.201 3.799 14 O -0.383 6.383 15 C -0.574 4.574 16 H 0.082 0.918 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.731 3.269 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.201 1.201 23 C -0.128 4.128 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.213 0.787 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.246 0.754 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.197 2.846 16.007 19.740 hybrid contribution 1.331 2.643 -0.101 2.961 sum -9.866 5.489 15.906 19.505 Atomic orbital electron populations 1.22744 0.81139 1.02880 0.99782 1.87975 1.19545 1.27287 1.95346 1.22553 0.92473 0.85528 1.00766 1.22506 0.93372 0.97473 0.88208 1.88049 1.21567 1.81820 1.37190 1.23311 0.82035 0.99779 0.99410 1.21831 0.94356 0.94003 0.83931 0.87259 1.86721 1.69443 1.29108 1.49232 1.23215 0.95429 0.98600 0.96741 1.68926 1.13578 1.35042 1.01180 1.24525 1.02323 0.93379 0.92937 1.19437 0.90423 0.84453 0.85592 1.86023 1.93758 1.34023 1.24503 1.21528 1.12593 1.25594 0.97685 0.91782 1.25063 0.95352 0.96099 0.96612 1.69292 1.31306 1.44755 1.08271 0.86466 0.81491 0.81006 0.77919 1.20005 1.20997 1.20131 1.24114 0.89084 1.00595 0.98976 0.93932 0.89562 0.94346 0.92034 0.92248 0.92650 0.91989 0.93312 0.92565 0.78703 0.94402 0.90725 0.90762 0.92924 0.75443 0.91761 0.92055 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.59 10.67 -40.08 -0.43 -5.02 16 3 C 0.06 0.62 6.32 37.16 0.23 0.85 16 4 C 0.06 0.63 6.32 37.16 0.23 0.87 16 5 O -0.37 -5.21 10.27 -49.79 -0.51 -5.72 16 6 C 0.03 0.41 5.57 37.16 0.21 0.62 16 7 C 0.12 1.87 3.52 -26.73 -0.09 1.78 16 8 H 0.11 1.92 8.14 -51.93 -0.42 1.49 16 9 O -0.54 -9.52 11.22 -40.08 -0.45 -9.96 16 10 C -0.01 -0.17 4.67 -3.83 -0.02 -0.19 16 11 N -0.46 -9.91 6.41 -244.61 -1.57 -11.48 16 12 C 0.00 -0.06 5.21 -7.54 -0.04 -0.10 16 13 C 0.24 6.27 1.56 -91.24 -0.14 6.13 16 14 O -0.57 -15.96 13.53 -35.23 -0.48 -16.44 16 15 C -0.54 -14.37 8.69 -34.44 -0.30 -14.67 16 16 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 17 C 0.07 1.88 5.39 -17.82 -0.10 1.78 16 18 N -0.90 -24.37 11.02 55.43 0.61 -23.76 16 19 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 C 0.00 0.02 7.12 -7.54 -0.05 -0.03 16 24 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.09 0.63 8.14 -51.92 -0.42 0.20 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.37 5.35 8.56 45.56 0.39 5.74 16 34 H 0.04 0.60 7.56 -51.93 -0.39 0.20 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.92 8.03 -51.93 -0.42 1.50 16 37 H 0.05 1.18 7.12 -51.93 -0.37 0.81 16 38 H 0.39 11.06 6.33 45.56 0.29 11.35 16 39 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.06 1.26 7.73 -51.93 -0.40 0.85 16 41 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -31.44 338.53 -7.22 -38.66 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -5.52 Total: 14.83 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 1.05 Total: -1.59 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: -0.96 Total: -35.24 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -1.87 Total: -37.14 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.44 -7.22 -38.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118061622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.010 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds