Wall clock time and date at job start Mon Mar 30 2020 20:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.70280 * 2 1 4 4 C 1.53198 * 109.58358 * 120.34835 * 2 1 3 5 5 C 1.53039 * 109.30910 * 174.42234 * 4 2 1 6 6 C 1.53034 * 109.54184 * 298.63534 * 5 4 2 7 7 F 1.39902 * 109.49901 * 181.31810 * 6 5 4 8 8 F 1.39898 * 109.49860 * 301.38167 * 6 5 4 9 9 C 1.52764 * 109.38266 * 61.24158 * 6 5 4 10 10 N 1.46921 * 109.00660 * 305.58812 * 9 6 5 11 11 C 1.34777 * 120.63397 * 233.58128 * 10 9 6 12 12 O 1.21277 * 120.00654 * 174.66924 * 11 10 9 13 13 C 1.50702 * 119.99443 * 354.67135 * 11 10 9 14 14 C 1.52998 * 109.46949 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47256 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.47058 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00312 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99693 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00235 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99767 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47204 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46952 * 120.00095 * 20 18 16 23 23 H 1.48502 * 109.46908 * 240.00004 * 20 18 16 24 24 H 1.09006 * 109.47118 * 176.03057 * 1 2 3 25 25 H 1.09004 * 109.47774 * 296.03722 * 1 2 3 26 26 H 1.08997 * 109.47159 * 56.03530 * 1 2 3 27 27 H 1.08998 * 109.49698 * 294.37589 * 4 2 1 28 28 H 1.08997 * 109.49612 * 54.47607 * 4 2 1 29 29 H 1.09008 * 109.46350 * 58.66113 * 5 4 2 30 30 H 1.09005 * 109.46183 * 178.61394 * 5 4 2 31 31 H 1.09005 * 109.50700 * 185.70567 * 9 6 5 32 32 H 1.09000 * 109.43307 * 65.42425 * 9 6 5 33 33 H 1.09004 * 109.47290 * 299.99199 * 13 11 10 34 34 H 1.08998 * 109.47763 * 59.99991 * 13 11 10 35 35 H 1.08999 * 109.47311 * 299.99703 * 14 13 11 36 36 H 1.09004 * 109.47234 * 60.00022 * 14 13 11 37 37 H 1.09004 * 109.47351 * 300.00129 * 15 14 13 38 38 H 1.08996 * 109.46928 * 60.00227 * 15 14 13 39 39 H 0.97000 * 120.00011 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0434 -0.7293 1.2456 5 6 3.5674 -0.8479 1.1703 6 6 3.9569 -1.6657 -0.0632 7 9 5.3486 -1.7990 -0.1147 8 9 3.3689 -2.9329 0.0120 9 6 3.4644 -0.9520 -1.3209 10 7 2.0226 -0.6997 -1.1943 11 6 1.1674 -1.1071 -2.1530 12 8 -0.0281 -0.9799 -1.9933 13 6 1.6967 -1.7209 -3.4235 14 6 0.5265 -2.0936 -4.3359 15 6 1.0638 -2.7161 -5.6261 16 6 -0.0888 -3.0826 -6.5250 17 1 -1.1032 -2.8911 -6.2077 18 6 0.1516 -3.6635 -7.7522 19 7 1.3868 -3.8972 -8.1385 20 14 -1.2772 -4.1184 -8.8662 21 1 -2.5560 -3.7554 -8.2044 22 1 -1.1575 -3.3824 -10.1504 23 1 -1.2539 -5.5798 -9.1292 24 1 -0.3634 -1.0253 -0.0711 25 1 -0.3635 0.4511 0.9234 26 1 -0.3633 0.5741 -0.8523 27 1 1.7658 -0.1666 2.1369 28 1 1.6029 -1.7252 1.2915 29 1 4.0061 0.1475 1.0995 30 1 3.9377 -1.3446 2.0671 31 1 3.6505 -1.5800 -2.1922 32 1 3.9928 -0.0050 -1.4309 33 1 2.3407 -1.0038 -3.9327 34 1 2.2692 -2.6168 -3.1833 35 1 -0.1172 -2.8108 -3.8267 36 1 -0.0464 -1.1979 -4.5763 37 1 1.7073 -1.9986 -6.1353 38 1 1.6369 -3.6117 -5.3861 39 1 1.5559 -4.3061 -9.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120741537.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:08:37 Heat of formation + Delta-G solvation = -163.315458 kcal Electronic energy + Delta-G solvation = -22154.684074 eV Core-core repulsion = 18538.898886 eV Total energy + Delta-G solvation = -3615.785188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.02532 -48.03896 -41.52048 -38.24276 -36.22183 -34.63537 -33.70781 -32.86059 -29.81977 -28.37775 -26.14965 -25.62441 -23.48076 -22.47472 -21.63825 -20.18562 -18.68682 -18.43094 -18.07763 -17.74875 -17.05362 -16.84228 -16.60653 -16.45257 -15.56776 -15.18421 -14.94857 -14.73032 -14.39403 -14.32092 -14.15061 -14.04018 -13.75473 -13.64356 -13.31870 -13.31580 -13.12839 -12.71072 -12.54341 -12.48660 -12.38789 -12.12905 -12.10376 -11.69794 -11.57479 -11.41842 -11.20418 -10.55636 -10.10257 -9.73522 -8.20982 -6.31083 1.39042 1.39408 1.51341 1.53251 1.75380 2.41067 2.69874 3.00470 3.12132 3.27382 3.35734 3.62081 3.82000 3.99993 4.09697 4.15714 4.22316 4.25714 4.43680 4.47606 4.57136 4.73894 4.77974 4.80966 4.86042 4.92014 5.02256 5.06596 5.16687 5.25336 5.33448 5.52594 5.64462 5.73242 5.84946 6.17030 6.27746 6.84397 7.12655 7.37776 8.90848 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027150 B = 0.003941 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.069078 B = 7103.529574 C = 7837.680221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.133 3.867 3 H 0.106 0.894 4 C -0.126 4.126 5 C -0.151 4.151 6 C 0.266 3.734 7 F -0.199 7.199 8 F -0.215 7.215 9 C 0.066 3.934 10 N -0.609 5.609 11 C 0.521 3.479 12 O -0.554 6.554 13 C -0.136 4.136 14 C -0.079 4.079 15 C 0.025 3.975 16 C -0.546 4.546 17 H 0.052 0.948 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.962 3.038 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.276 1.276 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.120 0.880 28 H 0.055 0.945 29 H 0.126 0.874 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.136 0.864 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.039 0.961 36 H 0.045 0.955 37 H 0.002 0.998 38 H -0.003 1.003 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.596 10.405 21.653 25.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.032 3.968 3 H 0.124 0.876 4 C -0.164 4.164 5 C -0.189 4.189 6 C 0.229 3.771 7 F -0.180 7.180 8 F -0.196 7.196 9 C -0.058 4.058 10 N -0.344 5.344 11 C 0.311 3.689 12 O -0.432 6.432 13 C -0.176 4.176 14 C -0.117 4.117 15 C -0.012 4.012 16 C -0.584 4.584 17 H 0.070 0.930 18 C -0.195 4.195 19 N -0.570 5.570 20 Si 0.787 3.213 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.202 1.202 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.138 0.862 28 H 0.074 0.926 29 H 0.144 0.856 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.154 0.846 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.020 0.980 38 H 0.016 0.984 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.063 10.379 21.608 24.990 hybrid contribution -0.419 -0.909 -0.976 1.398 sum 6.644 9.470 20.632 23.654 Atomic orbital electron populations 1.22036 0.93454 1.02123 1.01082 1.21658 0.95423 0.96507 0.83231 0.87630 1.22006 0.93644 1.01858 0.98895 1.22575 0.98054 1.02614 0.95655 1.21720 0.74096 0.80754 1.00521 1.93021 1.31064 1.96322 1.97630 1.93007 1.84144 1.44845 1.97587 1.22729 0.81762 1.04065 0.97218 1.48062 1.06413 1.58465 1.21447 1.20925 0.86140 0.76811 0.85048 1.90748 1.16923 1.55687 1.79836 1.21789 1.00262 1.02339 0.93203 1.21139 0.96123 0.99385 0.95074 1.19024 0.95399 0.94647 0.92109 1.21705 0.93862 1.40242 1.02609 0.92996 1.25912 0.98484 0.95533 0.99541 1.70074 1.20847 1.44397 1.21679 0.85440 0.79315 0.78059 0.78495 1.19159 1.19966 1.20161 0.93895 0.91179 0.93156 0.86175 0.92629 0.85556 0.88075 0.87414 0.84638 0.87317 0.88610 0.94248 0.93626 0.97966 0.98446 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 7.59 71.98 0.55 -2.41 16 2 C 0.13 2.31 3.49 44.98 0.16 2.47 16 3 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 4 C -0.13 -1.64 5.25 30.67 0.16 -1.47 16 5 C -0.15 -1.65 5.42 30.62 0.17 -1.49 16 6 C 0.27 4.73 2.14 30.53 0.07 4.79 16 7 F -0.20 -3.81 17.07 44.97 0.77 -3.04 16 8 F -0.21 -5.41 16.45 44.97 0.74 -4.67 16 9 C 0.07 1.14 5.77 86.22 0.50 1.64 16 10 N -0.61 -13.64 2.96 -795.85 -2.36 -16.00 16 11 C 0.52 16.37 7.60 87.66 0.67 17.04 16 12 O -0.55 -21.02 11.38 -3.02 -0.03 -21.06 16 13 C -0.14 -4.55 4.11 29.85 0.12 -4.43 16 14 C -0.08 -3.52 4.44 30.59 0.14 -3.38 16 15 C 0.03 1.36 4.97 29.85 0.15 1.51 16 16 C -0.55 -32.42 9.11 25.60 0.23 -32.18 16 17 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 18 C 0.00 0.19 5.46 84.66 0.46 0.65 16 19 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 20 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 21 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H 0.04 1.25 6.73 -2.38 -0.02 1.24 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 1.40 6.77 -2.39 -0.02 1.38 16 27 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 1.02 7.74 -2.39 -0.02 1.00 16 29 H 0.13 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.11 2.03 5.96 -2.38 -0.01 2.01 16 32 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.11 3.17 8.12 -2.39 -0.02 3.15 16 34 H 0.10 3.04 7.47 -2.39 -0.02 3.02 16 35 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 36 H 0.04 2.08 8.10 -2.38 -0.02 2.06 16 37 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -73.06 317.54 5.82 -67.23 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: 1.03 Total: 3.89 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 3.36 Total: -17.27 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -2.07 Total: -72.62 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.03 Total: -21.06 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 1.51 Total: -7.71 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -73.06 5.82 -67.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120741537.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.083 kcal (2) G-P(sol) polarization free energy of solvation -73.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds