Wall clock time and date at job start Mon Mar 30 2020 20:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86300 * 109.46876 * 2 1 4 4 C 1.86298 * 109.47274 * 239.99955 * 2 1 3 5 5 C 1.86799 * 109.47120 * 119.99609 * 2 1 3 6 6 C 1.38238 * 119.99936 * 90.00105 * 5 2 1 7 7 C 1.38226 * 120.00108 * 179.97438 * 6 5 2 8 8 C 1.38237 * 119.99950 * 359.95628 * 7 6 5 9 9 C 1.50699 * 120.00011 * 180.02562 * 8 7 6 10 10 N 1.46906 * 109.47140 * 90.00101 * 9 8 7 11 11 C 1.47477 * 110.99870 * 74.02858 * 10 9 8 12 12 C 1.53509 * 87.93103 * 138.70236 * 11 10 9 13 13 C 1.50702 * 114.34661 * 220.31290 * 12 11 10 14 14 N 1.27944 * 119.99708 * 68.92397 * 13 12 11 15 15 Si 1.86799 * 120.00386 * 248.92980 * 13 12 11 16 16 H 1.48494 * 109.47416 * 89.99679 * 15 13 12 17 17 H 1.48503 * 109.47008 * 209.99629 * 15 13 12 18 18 H 1.48500 * 109.47088 * 329.99489 * 15 13 12 19 19 C 1.47480 * 111.00036 * 170.00054 * 10 9 8 20 20 C 1.38231 * 120.00171 * 0.28010 * 8 7 6 21 21 C 1.38235 * 119.99869 * 359.50931 * 20 8 7 22 22 H 1.08999 * 109.47495 * 300.00160 * 1 2 3 23 23 H 1.09001 * 109.47421 * 60.00611 * 1 2 3 24 24 H 1.09007 * 109.46928 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47323 * 180.02562 * 3 2 1 26 26 H 1.09011 * 109.47145 * 300.00012 * 3 2 1 27 27 H 1.08999 * 109.47189 * 59.99653 * 3 2 1 28 28 H 1.09007 * 109.46948 * 299.99748 * 4 2 1 29 29 H 1.09001 * 109.47359 * 59.99396 * 4 2 1 30 30 H 1.09001 * 109.46859 * 180.02562 * 4 2 1 31 31 H 1.08001 * 119.99973 * 359.97438 * 6 5 2 32 32 H 1.08002 * 120.00448 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.47103 * 330.00201 * 9 8 7 34 34 H 1.09000 * 109.47247 * 210.00079 * 9 8 7 35 35 H 1.09001 * 113.47815 * 253.47104 * 11 10 9 36 36 H 1.09007 * 113.47621 * 23.93868 * 11 10 9 37 37 H 1.09005 * 114.16900 * 87.62550 * 12 11 10 38 38 H 0.97003 * 120.00126 * 179.97438 * 14 13 12 39 39 H 1.08997 * 113.47604 * 336.06347 * 19 10 9 40 40 H 1.08993 * 113.47735 * 106.52795 * 19 10 9 41 41 H 1.07999 * 120.00208 * 179.72856 * 20 8 7 42 42 H 1.08002 * 120.00579 * 180.25756 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4857 -0.8805 1.5253 6 6 2.7161 -2.2431 1.4911 7 6 3.1773 -2.8946 2.6196 8 6 3.4091 -2.1833 3.7821 9 6 3.9125 -2.8935 5.0122 10 7 5.3816 -2.8938 5.0107 11 6 5.9107 -1.5580 5.3436 12 6 6.9675 -2.2543 6.2123 13 6 7.2506 -1.5620 7.5206 14 7 6.3616 -1.5447 8.4406 15 14 8.8992 -0.7292 7.7992 16 1 8.8212 0.6850 7.3529 17 1 9.2386 -0.7741 9.2442 18 1 9.9486 -1.4363 7.0220 19 6 5.9113 -3.3644 6.3041 20 6 3.1740 -0.8216 3.8177 21 6 2.7169 -0.1693 2.6879 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.5739 1.7566 -0.0005 26 1 2.1205 2.2703 -0.8901 27 1 2.1205 2.2703 0.8899 28 1 2.1207 -1.9060 -1.5210 29 1 2.1206 -0.3645 -2.4111 30 1 3.5740 -0.8786 -1.5208 31 1 2.5357 -2.7987 0.5827 32 1 3.3570 -3.9592 2.5931 33 1 3.5490 -3.9211 5.0129 34 1 3.5502 -2.3793 5.9024 35 1 6.3311 -1.0316 4.4867 36 1 5.2138 -0.9450 5.9153 37 1 7.8704 -2.5408 5.6729 38 1 6.5438 -1.0994 9.2829 39 1 5.2147 -3.2335 7.1322 40 1 6.3322 -4.3689 6.2614 41 1 3.3509 -0.2667 4.7272 42 1 2.5372 0.8953 2.7144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141729844.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:08:48 Heat of formation + Delta-G solvation = 52.261733 kcal Electronic energy + Delta-G solvation = -18839.387163 eV Core-core repulsion = 16136.730341 eV Total energy + Delta-G solvation = -2702.656822 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.47892 -39.67895 -36.26135 -33.43521 -31.80137 -29.98429 -29.29515 -28.28480 -28.26703 -26.85449 -26.12457 -23.39601 -22.76829 -21.55170 -20.01454 -17.75615 -17.54252 -16.72519 -16.57344 -16.21547 -15.76509 -15.19361 -14.59803 -14.29209 -14.19162 -14.03903 -13.96399 -13.75352 -13.68396 -13.55205 -13.39275 -13.29732 -13.14937 -13.09890 -13.02317 -12.96260 -12.40271 -12.33139 -11.90403 -11.88331 -11.67124 -11.11613 -10.89301 -10.74601 -10.69527 -10.08086 -9.76697 -9.71780 -9.46809 0.36607 0.59537 0.76776 1.11908 1.48173 1.76613 1.88321 1.89932 2.04630 2.11662 2.69114 2.85743 3.16778 3.50375 3.70278 3.84261 3.96015 3.98711 4.19358 4.28663 4.42306 4.48627 4.57286 4.60384 4.73375 4.77301 4.82497 4.84908 4.85181 4.89116 4.90410 4.90616 4.91499 4.99731 5.12163 5.19483 5.22811 5.27589 5.52813 5.59931 5.63194 5.67703 5.72168 5.74302 6.00613 6.22502 6.89362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.123 2.877 3 C -0.460 4.460 4 C -0.461 4.461 5 C -0.383 4.383 6 C -0.100 4.100 7 C -0.128 4.128 8 C -0.081 4.081 9 C 0.062 3.938 10 N -0.476 5.476 11 C 0.021 3.979 12 C -0.094 4.094 13 C 0.005 3.995 14 N -0.654 5.654 15 Si 0.982 3.018 16 H -0.251 1.251 17 H -0.261 1.261 18 H -0.234 1.234 19 C 0.014 3.986 20 C -0.137 4.137 21 C -0.100 4.100 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.134 0.866 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.135 0.865 38 H 0.345 0.655 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.118 0.882 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 1.537 -0.673 2.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.310 2.690 3 C -0.567 4.567 4 C -0.568 4.568 5 C -0.423 4.423 6 C -0.118 4.118 7 C -0.147 4.147 8 C -0.081 4.081 9 C -0.066 4.066 10 N -0.198 5.198 11 C -0.109 4.109 12 C -0.114 4.114 13 C -0.243 4.243 14 N -0.268 5.268 15 Si 0.798 3.202 16 H -0.175 1.175 17 H -0.185 1.185 18 H -0.157 1.157 19 C -0.115 4.115 20 C -0.156 4.156 21 C -0.118 4.118 22 H 0.085 0.915 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.139 0.861 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.153 0.847 38 H 0.162 0.838 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.136 0.864 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.292 1.154 -0.992 1.996 hybrid contribution -0.064 0.443 1.458 1.525 sum 1.228 1.597 0.466 2.068 Atomic orbital electron populations 1.26286 1.21700 1.04376 1.04495 0.77210 0.65179 0.64751 0.61839 1.26256 1.06391 1.19290 1.04798 1.26266 1.06377 1.08418 1.15748 1.27928 1.03688 0.99540 1.11116 1.21350 0.97206 0.95211 0.98062 1.21274 0.99978 1.00179 0.93261 1.19804 0.98871 0.94097 0.95319 1.21576 0.89695 1.00685 0.94658 1.69049 1.08044 1.12201 1.30525 1.23744 0.96003 0.92674 0.98490 1.22180 0.99334 0.96621 0.93215 1.30203 1.03412 0.95497 0.95169 1.68081 1.35876 1.17203 1.05590 0.85017 0.74722 0.79825 0.80605 1.17453 1.18510 1.15654 1.23804 0.96724 0.99575 0.91446 1.21267 1.01021 0.94103 0.99201 1.21320 0.97270 1.00407 0.92771 0.91504 0.90656 0.91498 0.91297 0.90640 0.91012 0.91034 0.90640 0.91339 0.84795 0.86105 0.89783 0.93220 0.89221 0.91297 0.84674 0.83785 0.90393 0.89215 0.86422 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.03 8.65 113.37 0.98 2.01 16 2 Si 1.12 -4.78 12.32 68.60 0.85 -3.93 16 3 C -0.46 1.49 8.53 113.37 0.97 2.45 16 4 C -0.46 1.37 8.53 113.37 0.97 2.34 16 5 C -0.38 -0.50 4.59 22.27 0.10 -0.39 16 6 C -0.10 -0.29 9.29 22.27 0.21 -0.08 16 7 C -0.13 -0.65 9.70 22.27 0.22 -0.43 16 8 C -0.08 -0.42 5.18 -19.87 -0.10 -0.52 16 9 C 0.06 0.24 4.98 85.56 0.43 0.66 16 10 N -0.48 -1.63 6.40 -932.52 -5.97 -7.60 16 11 C 0.02 0.03 6.41 83.57 0.54 0.56 16 12 C -0.09 0.10 4.03 -11.20 -0.05 0.05 16 13 C 0.01 -0.01 5.15 88.68 0.46 0.45 16 14 N -0.65 -0.65 12.71 24.11 0.31 -0.35 16 15 Si 0.98 -3.62 29.56 68.60 2.03 -1.59 16 16 H -0.25 0.45 7.11 99.48 0.71 1.16 16 17 H -0.26 0.42 7.11 99.48 0.71 1.13 16 18 H -0.23 0.82 7.11 99.48 0.71 1.53 16 19 C 0.01 0.02 7.17 83.57 0.60 0.62 16 20 C -0.14 -0.59 9.13 22.27 0.20 -0.39 16 21 C -0.10 -0.25 9.29 22.27 0.21 -0.04 16 22 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 23 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 24 H 0.07 -0.10 7.96 -2.38 -0.02 -0.12 16 25 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 26 H 0.07 -0.29 7.96 -2.38 -0.02 -0.30 16 27 H 0.07 -0.25 7.68 -2.39 -0.02 -0.27 16 28 H 0.07 -0.23 7.69 -2.38 -0.02 -0.24 16 29 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 30 H 0.07 -0.15 7.96 -2.39 -0.02 -0.16 16 31 H 0.13 -0.14 7.43 -2.91 -0.02 -0.17 16 32 H 0.12 0.42 8.06 -2.91 -0.02 0.39 16 33 H 0.08 0.29 8.09 -2.38 -0.02 0.27 16 34 H 0.05 0.20 7.50 -2.39 -0.02 0.18 16 35 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.07 0.15 7.33 -2.38 -0.02 0.13 16 37 H 0.14 -0.58 7.87 -2.38 -0.02 -0.60 16 38 H 0.34 -0.61 8.23 -92.71 -0.76 -1.38 16 39 H 0.08 0.26 6.93 -2.39 -0.02 0.25 16 40 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.12 0.28 7.72 -2.91 -0.02 0.26 16 42 H 0.13 -0.22 7.43 -2.91 -0.02 -0.24 16 Total: 0.00 -9.06 346.95 3.90 -5.16 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: 0.97 Total: 1.02 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 5.72 Total: 7.29 kcal Atomic # 7 Polarization: -2.28 SS G_CDS: -5.67 Total: -7.95 kcal Atomic # 14 Polarization: -8.40 SS G_CDS: 2.87 Total: -5.53 kcal Total: -9.06 3.90 -5.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141729844.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.426 kcal (2) G-P(sol) polarization free energy of solvation -9.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds