Wall clock time and date at job start Mon Mar 30 2020 20:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47317 * 2 1 4 4 N 1.46505 * 109.47212 * 59.99649 * 3 2 1 5 5 C 1.34771 * 119.99622 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00597 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99622 * 179.97438 * 5 4 3 8 8 C 1.50703 * 109.47064 * 180.02562 * 7 5 4 9 9 H 1.07995 * 120.00280 * 0.02562 * 8 7 5 10 10 C 1.37880 * 119.99788 * 180.02562 * 8 7 5 11 11 N 1.31511 * 120.00327 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99743 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46828 * 90.00241 * 12 10 8 14 14 H 1.48495 * 109.46968 * 209.99597 * 12 10 8 15 15 H 1.48499 * 109.47437 * 330.00066 * 12 10 8 16 16 C 1.53006 * 109.46623 * 119.99820 * 2 1 3 17 17 C 1.52997 * 109.47127 * 60.00064 * 16 2 1 18 18 C 1.53005 * 109.47452 * 59.99878 * 17 16 2 19 19 F 1.39899 * 109.47194 * 180.02562 * 18 17 16 20 20 F 1.39891 * 109.46897 * 59.99719 * 18 17 16 21 21 C 1.53006 * 109.46542 * 300.00026 * 18 17 16 22 22 C 1.52992 * 109.46961 * 239.99538 * 2 1 3 23 23 H 1.09002 * 109.46716 * 60.00091 * 1 2 3 24 24 H 1.09000 * 109.47486 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47362 * 300.00732 * 1 2 3 26 26 H 1.09002 * 109.47153 * 299.99641 * 3 2 1 27 27 H 1.09001 * 109.46832 * 179.97438 * 3 2 1 28 28 H 0.96996 * 119.99606 * 0.02562 * 4 3 2 29 29 H 1.09001 * 109.47380 * 300.00190 * 7 5 4 30 30 H 1.09002 * 109.47060 * 60.00278 * 7 5 4 31 31 H 0.97000 * 120.00354 * 180.02562 * 11 10 8 32 32 H 1.09001 * 109.47002 * 179.97438 * 16 2 1 33 33 H 1.08993 * 109.46955 * 300.00075 * 16 2 1 34 34 H 1.09001 * 109.47289 * 299.99953 * 17 16 2 35 35 H 1.09002 * 109.47153 * 179.97438 * 17 16 2 36 36 H 1.09001 * 109.47369 * 299.99416 * 21 18 17 37 37 H 1.09004 * 109.46785 * 179.97438 * 21 18 17 38 38 H 1.09002 * 109.47103 * 60.00608 * 22 2 1 39 39 H 1.09001 * 109.47066 * 180.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1331 1.1962 5 6 1.8777 3.4233 1.4096 6 8 2.5751 4.0127 0.6113 7 6 1.3749 4.1339 2.6397 8 6 1.8774 5.5547 2.6397 9 1 2.4984 5.9079 1.8298 10 6 1.5443 6.4037 3.6738 11 7 0.7886 5.9735 4.6604 12 14 2.1678 8.1646 3.6742 13 1 1.1902 9.0359 2.9740 14 1 2.3324 8.6310 5.0744 15 1 3.4762 8.2267 2.9746 16 6 2.0399 -0.7213 1.2494 17 6 1.5298 -2.1637 1.2494 18 6 2.0399 -2.8851 0.0001 19 9 1.5730 -4.2039 -0.0001 20 9 3.4388 -2.8851 0.0002 21 6 1.5299 -2.1638 -1.2491 22 6 2.0399 -0.7213 -1.2491 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.6768 1.9563 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 0.9943 1.6616 1.8348 29 1 0.2849 4.1344 2.6390 30 1 1.7374 3.6199 3.5300 31 1 0.5539 6.5709 5.3877 32 1 3.1299 -0.7217 1.2492 33 1 1.6765 -0.2074 2.1392 34 1 0.4398 -2.1637 1.2493 35 1 1.8935 -2.6777 2.1392 36 1 0.4399 -2.1638 -1.2492 37 1 1.8936 -2.6774 -2.1391 38 1 1.6767 -0.2075 -2.1392 39 1 3.1299 -0.7217 -1.2489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143205198.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:08:58 Heat of formation + Delta-G solvation = -189.536678 kcal Electronic energy + Delta-G solvation = -21939.367233 eV Core-core repulsion = 18322.445008 eV Total energy + Delta-G solvation = -3616.922226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.144 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.94049 -47.94148 -40.94887 -39.58034 -35.50067 -35.07243 -32.45717 -32.10206 -30.81596 -28.07943 -26.84142 -25.16015 -24.18990 -22.35373 -21.29351 -19.70271 -18.51322 -18.37483 -17.85371 -17.34717 -17.21638 -16.80510 -16.38966 -16.27805 -15.50636 -15.42168 -14.90165 -14.69296 -14.53543 -14.31961 -14.17753 -14.13286 -13.49576 -13.45170 -13.32441 -13.09097 -12.95552 -12.80493 -12.55642 -12.49128 -12.41714 -12.04807 -11.91979 -11.58738 -11.44008 -11.41085 -11.00812 -10.61846 -10.49707 -9.92609 -8.24575 -6.31387 1.40828 1.41336 1.54108 1.93099 2.35468 2.54793 2.84258 3.10968 3.14839 3.28001 3.43744 3.75886 3.86238 3.94022 4.12038 4.23874 4.32549 4.41702 4.47235 4.67336 4.72885 4.79259 4.82141 4.89198 4.95704 5.01822 5.03458 5.09878 5.11760 5.20241 5.28719 5.33338 5.51559 5.61767 5.75779 6.07830 6.73370 6.86382 7.35266 7.55663 8.87491 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042709 B = 0.003380 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.442161 B = 8281.201841 C = 8440.792193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.064 4.064 3 C 0.131 3.869 4 N -0.721 5.721 5 C 0.517 3.483 6 O -0.588 6.588 7 C 0.007 3.993 8 C -0.537 4.537 9 H 0.054 0.946 10 C 0.011 3.989 11 N -0.924 5.924 12 Si 0.962 3.038 13 H -0.271 1.271 14 H -0.274 1.274 15 H -0.275 1.275 16 C -0.111 4.111 17 C -0.154 4.154 18 C 0.278 3.722 19 F -0.213 7.213 20 F -0.215 7.215 21 C -0.151 4.151 22 C -0.104 4.104 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.409 0.591 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.267 0.733 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.671 -20.407 -9.345 22.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.064 4.064 3 C 0.008 3.992 4 N -0.376 5.376 5 C 0.306 3.694 6 O -0.468 6.468 7 C -0.032 4.032 8 C -0.576 4.576 9 H 0.072 0.928 10 C -0.188 4.188 11 N -0.564 5.564 12 Si 0.787 3.213 13 H -0.196 1.196 14 H -0.199 1.199 15 H -0.200 1.200 16 C -0.148 4.148 17 C -0.191 4.191 18 C 0.242 3.758 19 F -0.194 7.194 20 F -0.196 7.196 21 C -0.189 4.189 22 C -0.142 4.142 23 H 0.082 0.918 24 H 0.101 0.899 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.246 0.754 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.136 0.864 35 H 0.107 0.893 36 H 0.135 0.865 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.229 -19.987 -9.754 22.351 hybrid contribution 0.353 0.607 0.546 0.889 sum -1.876 -19.380 -9.208 21.538 Atomic orbital electron populations 1.22042 0.92419 1.03295 1.02852 1.20763 0.97469 0.92112 0.96070 1.21340 0.98235 0.91975 0.87675 1.46014 1.54284 1.11320 1.25936 1.21429 0.78565 0.81682 0.87754 1.90514 1.39979 1.67485 1.48810 1.19079 0.97695 0.95232 0.91236 1.21388 1.31963 0.96765 1.07448 0.92809 1.25764 0.95180 1.03028 0.94803 1.70020 1.37655 1.37590 1.11127 0.85485 0.78783 0.79441 0.77566 1.19647 1.19884 1.20006 1.21579 1.01183 0.93761 0.98310 1.22563 1.04567 0.96104 0.95910 1.21506 0.74926 0.78785 1.00537 1.92983 1.88438 1.40180 1.97835 1.92967 1.32247 1.96565 1.97828 1.22548 1.04565 0.96071 0.95677 1.21484 1.01320 0.93588 0.97834 0.91821 0.89871 0.92347 0.92364 0.93299 0.75352 0.93893 0.94027 0.92407 0.91903 0.89936 0.86449 0.89313 0.86487 0.88730 0.88808 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 7.61 71.98 0.55 -1.53 16 2 C -0.06 -1.08 0.53 -52.18 -0.03 -1.11 16 3 C 0.13 3.44 4.56 86.38 0.39 3.83 16 4 N -0.72 -22.79 4.96 -463.06 -2.30 -25.09 16 5 C 0.52 23.29 7.82 87.66 0.69 23.97 16 6 O -0.59 -31.12 15.46 -3.03 -0.05 -31.16 16 7 C 0.01 0.36 5.46 29.10 0.16 0.52 16 8 C -0.54 -31.73 8.92 25.60 0.23 -31.50 16 9 H 0.05 3.35 6.75 -2.91 -0.02 3.33 16 10 C 0.01 0.62 5.46 84.66 0.46 1.08 16 11 N -0.92 -53.80 13.29 21.45 0.28 -53.51 16 12 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 14 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 15 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 16 C -0.11 -1.89 4.44 30.60 0.14 -1.75 16 17 C -0.15 -2.16 5.18 30.60 0.16 -2.00 16 18 C 0.28 4.61 2.10 30.60 0.06 4.67 16 19 F -0.21 -4.08 17.06 44.97 0.77 -3.31 16 20 F -0.21 -4.66 16.02 44.97 0.72 -3.93 16 21 C -0.15 -1.85 5.18 30.60 0.16 -1.69 16 22 C -0.10 -1.51 4.61 30.59 0.14 -1.37 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.08 0.79 4.81 -2.39 -0.01 0.78 16 25 H 0.06 0.89 6.86 -2.39 -0.02 0.88 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.41 10.59 6.16 -92.71 -0.57 10.02 16 29 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 32 H 0.06 1.26 7.80 -2.39 -0.02 1.24 16 33 H 0.08 1.41 6.86 -2.39 -0.02 1.39 16 34 H 0.12 1.19 6.43 -2.39 -0.02 1.18 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.12 1.00 6.43 -2.39 -0.02 0.98 16 37 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.12 7.80 -2.39 -0.02 1.10 16 Total: -1.00 -70.73 312.86 5.06 -65.67 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.49 Total: 10.87 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 3.11 Total: -6.87 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -2.01 Total: -78.60 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.05 Total: -31.16 kcal Atomic # 9 Polarization: -8.74 SS G_CDS: 1.49 Total: -7.25 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -70.73 5.06 -65.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205198.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.863 kcal (2) G-P(sol) polarization free energy of solvation -70.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds