Wall clock time and date at job start Mon Mar 30 2020 20:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00637 * 2 1 4 4 H 1.48494 * 109.47279 * 270.00324 * 3 2 1 5 5 H 1.48508 * 109.46692 * 30.00145 * 3 2 1 6 6 H 1.48499 * 109.47590 * 149.99852 * 3 2 1 7 7 C 1.37883 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99549 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00200 * 179.97438 * 7 2 1 10 10 C 1.50703 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.38289 * 119.92348 * 89.99945 * 10 9 7 12 12 C 1.38101 * 120.07303 * 180.02562 * 11 10 9 13 13 C 1.38914 * 119.92297 * 0.02562 * 12 11 10 14 14 N 1.39674 * 120.07075 * 179.97438 * 13 12 11 15 15 C 1.46504 * 120.00066 * 179.97438 * 14 13 12 16 16 H 1.09001 * 109.46891 * 325.00351 * 15 14 13 17 17 C 1.53006 * 109.46883 * 84.99917 * 15 14 13 18 18 C 1.52997 * 109.47127 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47060 * 300.00449 * 18 17 15 20 20 C 1.52996 * 109.47328 * 60.00126 * 19 18 17 21 21 H 1.08992 * 109.47554 * 59.99639 * 20 19 18 22 22 O 1.42903 * 109.47126 * 180.02562 * 20 19 18 23 23 C 1.52997 * 109.47417 * 205.00003 * 15 14 13 24 24 C 1.38908 * 119.85399 * 0.24930 * 13 12 11 25 25 C 1.38102 * 119.92206 * 359.49686 * 24 13 12 26 26 H 0.97009 * 119.99789 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46843 * 60.00382 * 9 7 2 28 28 H 1.09000 * 109.46889 * 299.99963 * 9 7 2 29 29 H 1.07999 * 119.96190 * 0.04097 * 11 10 9 30 30 H 1.08002 * 120.03848 * 180.02562 * 12 11 10 31 31 H 0.97003 * 120.00310 * 359.97438 * 14 13 12 32 32 H 1.08998 * 109.46505 * 59.99948 * 17 15 14 33 33 H 1.08996 * 109.46884 * 300.00829 * 17 15 14 34 34 H 1.09002 * 109.47153 * 180.02562 * 18 17 15 35 35 H 1.09001 * 109.46832 * 60.00321 * 18 17 15 36 36 H 1.09004 * 109.46724 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.47194 * 299.99650 * 19 18 17 38 38 H 0.96701 * 113.99613 * 300.00003 * 22 20 19 39 39 H 1.09002 * 109.47045 * 60.00127 * 23 15 14 40 40 H 1.09001 * 109.47375 * 300.00052 * 23 15 14 41 41 H 1.08002 * 120.03923 * 179.72715 * 24 13 12 42 42 H 1.07996 * 119.96159 * 180.24725 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4643 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 6 4.0137 -2.6151 -0.0023 11 6 4.2432 -3.2647 -1.2013 12 6 4.7029 -4.5669 -1.2060 13 6 4.9344 -5.2244 -0.0044 14 7 5.3989 -6.5416 -0.0055 15 6 5.6430 -7.2334 1.2627 16 1 6.0171 -6.5216 1.9986 17 6 4.3365 -7.8494 1.7673 18 6 4.5912 -8.5713 3.0920 19 6 5.6276 -9.6765 2.8794 20 6 6.9340 -9.0605 2.3749 21 1 7.3079 -8.3484 3.1106 22 8 7.9018 -10.0929 2.1758 23 6 6.6791 -8.3387 1.0496 24 6 4.6974 -4.5708 1.1982 25 6 4.2427 -3.2668 1.1957 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6807 0.8889 28 1 3.8745 -0.6802 -0.8911 29 1 4.0628 -2.7530 -2.1351 30 1 4.8823 -5.0736 -2.1428 31 1 5.5598 -6.9985 -0.8459 32 1 3.9624 -8.5610 1.0313 33 1 3.5983 -7.0619 1.9190 34 1 3.6605 -9.0105 3.4513 35 1 4.9651 -7.8592 3.8277 36 1 5.8087 -10.1911 3.8232 37 1 5.2537 -10.3886 2.1437 38 1 8.1127 -10.5938 2.9757 39 1 7.6099 -7.8999 0.6901 40 1 6.3050 -9.0505 0.3137 41 1 4.8722 -5.0806 2.1342 42 1 4.0621 -2.7568 2.1303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169251357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:35 Heat of formation + Delta-G solvation = -46.857524 kcal Electronic energy + Delta-G solvation = -20703.806217 eV Core-core repulsion = 17647.300554 eV Total energy + Delta-G solvation = -3056.505663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.79970 -38.54924 -36.41378 -34.49661 -32.83612 -31.14279 -30.31751 -29.92661 -28.83489 -26.27805 -23.17980 -22.83301 -22.24701 -21.52115 -20.15246 -19.86836 -17.63689 -16.92527 -16.69032 -16.02563 -15.30052 -14.90156 -14.59983 -14.36958 -14.23186 -13.95401 -13.56302 -13.11341 -13.04252 -12.75839 -12.71866 -12.38548 -12.29440 -11.82987 -11.55839 -11.49744 -11.42478 -11.13865 -10.79487 -10.78428 -10.57496 -10.27816 -10.12477 -10.04530 -9.88577 -9.41443 -9.07306 -8.52252 -8.26179 -6.76314 -6.01288 -3.99113 2.09583 2.32525 3.32666 3.39479 3.40116 3.43880 3.95599 4.36693 4.47050 4.53397 4.58809 4.71407 4.81359 4.95986 5.03515 5.11757 5.20223 5.28515 5.31192 5.50681 5.54820 5.63442 5.69762 5.73229 5.77145 5.92318 5.97888 6.04041 6.07002 6.20386 6.25967 6.40833 6.65732 6.81410 7.08750 7.11422 7.21079 7.27014 7.43569 7.75787 7.76098 7.83650 8.04013 8.58589 9.05592 9.60007 11.11934 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037346 B = 0.003194 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.562348 B = 8764.150046 C = 9027.935078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.509 4.509 8 H 0.073 0.927 9 C 0.020 3.980 10 C -0.081 4.081 11 C -0.077 4.077 12 C -0.193 4.193 13 C 0.187 3.813 14 N -0.751 5.751 15 C 0.162 3.838 16 H 0.078 0.922 17 C -0.140 4.140 18 C -0.116 4.116 19 C -0.152 4.152 20 C 0.109 3.891 21 H 0.057 0.943 22 O -0.569 6.569 23 C -0.119 4.119 24 C -0.195 4.195 25 C -0.078 4.078 26 H 0.263 0.737 27 H 0.024 0.976 28 H 0.019 0.981 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.393 0.607 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.378 0.622 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.111 0.889 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.185 -18.958 5.322 24.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.547 4.547 8 H 0.091 0.909 9 C -0.018 4.018 10 C -0.082 4.082 11 C -0.096 4.096 12 C -0.215 4.215 13 C 0.087 3.913 14 N -0.383 5.383 15 C 0.056 3.944 16 H 0.096 0.904 17 C -0.179 4.179 18 C -0.154 4.154 19 C -0.190 4.190 20 C 0.050 3.950 21 H 0.075 0.925 22 O -0.375 6.375 23 C -0.157 4.157 24 C -0.218 4.218 25 C -0.096 4.096 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.135 0.865 30 H 0.127 0.873 31 H 0.227 0.773 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.225 0.775 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.129 0.871 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.021 -18.640 4.890 23.831 hybrid contribution 0.209 0.447 0.244 0.550 sum 14.230 -18.193 5.133 23.661 Atomic orbital electron populations 1.69913 1.06268 1.26819 1.51235 1.25022 0.94727 0.99017 0.94700 0.86804 0.80412 0.83710 0.78570 1.20253 1.21389 1.18920 1.21026 0.88640 0.94500 1.50517 0.90912 1.18704 0.97129 0.89019 0.96912 1.20042 0.97784 0.98312 0.92102 1.20800 0.97158 0.93513 0.98095 1.20458 1.09285 0.96281 0.95476 1.17606 0.95500 0.84167 0.93980 1.44429 1.75659 1.11604 1.06598 1.20630 0.93674 0.92885 0.87213 0.90402 1.22119 0.98567 1.00406 0.96773 1.21447 0.98880 0.97348 0.97747 1.22299 0.96238 0.98958 1.01485 1.21715 0.87638 0.88845 0.96819 0.92456 1.86509 1.61785 1.50255 1.38909 1.21702 0.99648 0.97328 0.96999 1.20529 1.09356 0.96252 0.95619 1.20812 0.97226 0.93539 0.98067 0.92741 0.95796 0.96239 0.86532 0.87283 0.77273 0.91678 0.90750 0.91329 0.91628 0.91733 0.91092 0.77516 0.90727 0.90887 0.87148 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.09 13.96 55.43 0.77 -27.31 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.51 -14.71 9.65 -34.44 -0.33 -15.04 16 8 H 0.07 2.31 7.98 -52.48 -0.42 1.89 16 9 C 0.02 0.48 4.17 -29.03 -0.12 0.36 16 10 C -0.08 -1.74 5.07 -104.58 -0.53 -2.27 16 11 C -0.08 -1.50 9.69 -39.61 -0.38 -1.89 16 12 C -0.19 -3.23 9.90 -39.38 -0.39 -3.62 16 13 C 0.19 2.94 6.64 -83.79 -0.56 2.39 16 14 N -0.75 -9.16 5.25 -52.16 -0.27 -9.44 16 15 C 0.16 1.67 2.14 -67.93 -0.15 1.52 16 16 H 0.08 0.85 6.50 -51.93 -0.34 0.51 16 17 C -0.14 -1.40 5.43 -26.73 -0.15 -1.54 16 18 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 19 C -0.15 -1.07 5.54 -26.73 -0.15 -1.22 16 20 C 0.11 0.86 3.47 -26.71 -0.09 0.77 16 21 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 22 O -0.57 -4.68 13.32 -35.23 -0.47 -5.15 16 23 C -0.12 -1.08 5.04 -26.71 -0.13 -1.21 16 24 C -0.20 -3.26 8.83 -39.38 -0.35 -3.61 16 25 C -0.08 -1.51 9.69 -39.61 -0.38 -1.90 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.02 0.58 7.14 -51.93 -0.37 0.21 16 28 H 0.02 0.47 7.51 -51.93 -0.39 0.08 16 29 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 30 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 31 H 0.39 4.22 8.62 -40.82 -0.35 3.87 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.89 7.67 -51.93 -0.40 0.49 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.38 1.49 9.08 45.56 0.41 1.91 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.11 1.59 6.09 -52.49 -0.32 1.27 16 42 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -32.42 335.63 -9.54 -41.96 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.99 Total: 4.32 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -3.97 Total: -26.49 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.50 Total: -36.75 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.47 Total: -5.15 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.42 -9.54 -41.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169251357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.895 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds