Wall clock time and date at job start Mon Mar 30 2020 20:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.53000 * 109.47060 * 185.00270 * 4 2 1 6 6 C 1.50703 * 109.46912 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99776 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00001 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00114 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99955 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46999 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46979 * 120.00420 * 10 8 6 13 13 H 1.48498 * 109.46942 * 240.00334 * 10 8 6 14 14 N 1.46905 * 109.47170 * 240.00659 * 2 1 3 15 15 C 1.47616 * 111.00063 * 156.15674 * 14 2 1 16 16 C 1.52737 * 87.74012 * 221.87965 * 15 14 2 17 17 C 1.47620 * 111.00094 * 59.99451 * 14 2 1 18 18 C 1.53670 * 115.20391 * 140.79888 * 16 15 14 19 19 C 1.55478 * 101.97790 * 111.17513 * 18 16 15 20 20 F 1.39902 * 111.10889 * 275.55966 * 19 18 16 21 21 F 1.39897 * 111.11104 * 151.44378 * 19 18 16 22 22 C 1.55021 * 101.04034 * 33.50196 * 19 18 16 23 23 O 1.42416 * 116.07312 * 269.18679 * 16 15 14 24 24 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 25 25 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 26 26 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 28 28 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 29 29 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 30 30 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 31 31 H 0.97000 * 120.00354 * 180.02562 * 9 8 6 32 32 H 1.09000 * 113.51079 * 336.59839 * 15 14 2 33 33 H 1.09001 * 113.50539 * 107.16511 * 15 14 2 34 34 H 1.09002 * 113.51064 * 252.84302 * 17 14 2 35 35 H 1.09005 * 113.50972 * 23.34312 * 17 14 2 36 36 H 1.08997 * 110.92968 * 229.34864 * 18 16 15 37 37 H 1.09004 * 110.93045 * 353.00756 * 18 16 15 38 38 H 1.08996 * 110.29851 * 205.04243 * 22 19 18 39 39 H 1.08996 * 110.38173 * 82.93737 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3135 6 6 4.0672 -1.3232 2.5443 7 1 3.3688 -1.8038 3.2133 8 6 5.4185 -1.3601 2.8156 9 7 6.2691 -0.7753 2.0006 10 14 6.0412 -2.2395 4.3415 11 1 4.8911 -2.8103 5.0877 12 1 6.9628 -3.3329 3.9413 13 1 6.7645 -1.2748 5.2083 14 7 2.0197 -0.6924 -1.1996 15 6 3.3844 -0.2492 -1.5461 16 6 2.9429 -0.2334 -3.0082 17 6 1.5463 -0.0229 -2.4271 18 6 3.4877 0.9355 -3.8437 19 6 4.4675 0.2122 -4.8102 20 9 5.7199 0.0293 -4.2142 21 9 4.5844 0.9043 -6.0204 22 6 3.7412 -1.1427 -5.0101 23 8 3.1433 -1.4413 -3.7356 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7517 -1.7716 1.2054 28 1 1.6054 -0.2618 2.1369 29 1 3.9995 -1.0727 0.4258 30 1 3.8532 0.4370 1.3572 31 1 7.2198 -0.8016 2.1912 32 1 3.6331 0.7379 -1.1564 33 1 4.1510 -0.9938 -1.3315 34 1 0.7686 -0.5774 -2.9525 35 1 1.2895 1.0260 -2.2790 36 1 2.6864 1.4257 -4.3965 37 1 4.0183 1.6500 -3.2143 38 1 4.4565 -1.9185 -5.2832 39 1 2.9719 -1.0516 -5.7768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172498668.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:43 Heat of formation + Delta-G solvation = -108.609235 kcal Electronic energy + Delta-G solvation = -22421.217394 eV Core-core repulsion = 18807.804446 eV Total energy + Delta-G solvation = -3613.412948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.144 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.04550 -47.24651 -40.91526 -37.86869 -34.29175 -32.60563 -31.48618 -29.69622 -28.27313 -26.04454 -24.88031 -24.30730 -22.33604 -21.33419 -19.77687 -19.56064 -18.01222 -17.06794 -16.27899 -16.21825 -15.83852 -15.70950 -15.24734 -14.54549 -14.41428 -14.26149 -14.03511 -13.77428 -13.54372 -12.95994 -12.73957 -12.66814 -12.36779 -12.28087 -12.15186 -12.02779 -11.46303 -11.25543 -11.21770 -10.91924 -10.79270 -10.66327 -10.38369 -10.25638 -9.70044 -9.50563 -9.14321 -8.90574 -8.46290 -8.25006 -5.94470 -3.95183 3.15998 3.29685 3.34525 3.42052 3.46366 3.52469 4.09143 4.15011 4.34111 4.43751 4.51056 4.72531 5.11785 5.16075 5.22314 5.31206 5.36982 5.37737 5.41793 5.45390 5.55409 5.73081 5.77993 5.85559 6.04267 6.23171 6.32993 6.39574 6.57808 6.70196 6.83057 6.94173 7.22205 7.43364 7.73999 7.93809 8.06389 8.50706 9.11436 9.68065 11.16802 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018106 B = 0.005201 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.108786 B = 5381.971749 C = 6545.956287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.043 3.957 3 H 0.043 0.957 4 C -0.101 4.101 5 C 0.014 3.986 6 C -0.516 4.516 7 H 0.053 0.947 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.889 3.111 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.285 1.285 14 N -0.447 5.447 15 C 0.014 3.986 16 C 0.073 3.927 17 C -0.003 4.003 18 C -0.175 4.175 19 C 0.250 3.750 20 F -0.177 7.177 21 F -0.189 7.189 22 C 0.021 3.979 23 O -0.318 6.318 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.032 0.968 30 H 0.007 0.993 31 H 0.258 0.742 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.292 4.479 -15.182 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.065 4.065 3 H 0.061 0.939 4 C -0.138 4.138 5 C -0.023 4.023 6 C -0.555 4.555 7 H 0.071 0.929 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.717 3.283 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.212 1.212 14 N -0.170 5.170 15 C -0.115 4.115 16 C 0.032 3.968 17 C -0.133 4.133 18 C -0.214 4.214 19 C 0.213 3.787 20 F -0.157 7.157 21 F -0.170 7.170 22 C -0.057 4.057 23 O -0.236 6.236 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.025 0.975 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.126 0.874 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.305 3.610 -14.958 17.486 hybrid contribution 0.882 0.748 0.666 1.334 sum -7.423 4.358 -14.293 16.684 Atomic orbital electron populations 1.21857 0.95251 1.02198 1.00823 1.22403 0.94709 0.96197 0.93201 0.93868 1.21630 1.00012 0.99280 0.92915 1.19316 0.88742 0.96518 0.97702 1.21305 0.91910 1.33981 1.08273 0.92862 1.24994 0.97089 0.95695 0.96629 1.69958 1.02209 1.44375 1.36972 0.86588 0.78841 0.79514 0.83369 1.19813 1.21050 1.21151 1.69099 1.03578 1.44223 1.00094 1.24283 0.95034 1.02253 0.89896 1.22785 0.97814 0.83142 0.93041 1.24134 0.96349 0.99098 0.93674 1.23958 0.99336 0.99435 0.98650 1.22627 0.82209 0.93943 0.79879 1.93097 1.43530 1.95746 1.83368 1.93009 1.96578 1.80964 1.46415 1.24366 0.97788 0.94788 0.88779 1.88540 1.80869 1.27169 1.27055 0.92366 0.93573 0.92021 0.92451 0.93194 0.95007 0.97457 0.93191 0.89776 0.87431 0.89178 0.90517 0.87070 0.86988 0.87093 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.09 37.16 0.34 -1.65 16 2 C 0.04 0.74 1.98 -67.71 -0.13 0.60 16 3 H 0.04 0.73 7.52 -51.93 -0.39 0.34 16 4 C -0.10 -2.11 4.83 -26.73 -0.13 -2.24 16 5 C 0.01 0.36 4.18 -27.88 -0.12 0.24 16 6 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 7 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 10 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 N -0.45 -7.58 6.11 -236.63 -1.45 -9.03 16 15 C 0.01 0.24 5.01 -7.17 -0.04 0.20 16 16 C 0.07 0.99 1.74 -90.55 -0.16 0.84 16 17 C 0.00 -0.04 5.99 -7.17 -0.04 -0.09 16 18 C -0.18 -1.90 6.03 -25.07 -0.15 -2.05 16 19 C 0.25 2.97 2.69 -24.35 -0.07 2.91 16 20 F -0.18 -2.62 17.25 2.25 0.04 -2.58 16 21 F -0.19 -2.18 17.25 2.25 0.04 -2.14 16 22 C 0.02 0.23 7.42 38.23 0.28 0.51 16 23 O -0.32 -4.64 11.17 -35.23 -0.39 -5.03 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.54 7.02 -51.93 -0.36 0.18 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.03 0.86 5.10 -51.93 -0.26 0.59 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.08 1.43 7.33 -51.93 -0.38 1.05 16 33 H 0.11 2.24 6.84 -51.93 -0.35 1.88 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.08 0.85 7.62 -51.93 -0.40 0.45 16 36 H 0.11 0.91 8.12 -51.93 -0.42 0.49 16 37 H 0.11 1.20 7.81 -51.93 -0.41 0.79 16 38 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 317.98 15.07 4.79 4.79 Total: -1.00 -31.63 317.98 -7.78 -39.41 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.90 Total: -1.85 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -0.62 Total: -14.34 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: -0.71 Total: -35.28 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.39 Total: -5.03 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.08 Total: -4.72 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.63 -7.78 -39.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498668.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.200 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds