Wall clock time and date at job start Mon Mar 30 2020 20:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46875 * 2 1 4 4 H 1.08996 * 109.47555 * 55.00442 * 3 2 1 5 5 C 1.53004 * 109.47221 * 174.99940 * 3 2 1 6 6 N 1.46502 * 109.47272 * 294.99952 * 3 2 1 7 7 C 1.34779 * 119.99794 * 155.00324 * 6 3 2 8 8 O 1.21277 * 120.00293 * 0.02562 * 7 6 3 9 9 C 1.50703 * 119.99634 * 180.02562 * 7 6 3 10 10 C 1.52997 * 109.46821 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47035 * 305.36598 * 10 9 7 12 12 C 1.50699 * 109.47438 * 65.36827 * 10 9 7 13 13 H 1.07995 * 119.99993 * 34.61540 * 12 10 9 14 14 C 1.37882 * 119.99994 * 214.62062 * 12 10 9 15 15 N 1.31515 * 119.99714 * 186.44807 * 14 12 10 16 16 Si 1.86795 * 120.00033 * 6.44398 * 14 12 10 17 17 H 1.48503 * 109.47046 * 85.00819 * 16 14 12 18 18 H 1.48499 * 109.47139 * 205.00644 * 16 14 12 19 19 H 1.48500 * 109.47450 * 325.00959 * 16 14 12 20 20 C 1.50704 * 109.47184 * 185.36681 * 10 9 7 21 21 C 1.38233 * 120.00226 * 296.35899 * 20 10 9 22 22 C 1.38226 * 120.00135 * 179.78465 * 21 20 10 23 23 C 1.38239 * 120.00146 * 0.44121 * 22 21 20 24 24 C 1.38235 * 119.99524 * 359.81142 * 23 22 21 25 25 C 1.38229 * 120.00319 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.46857 * 300.00133 * 1 2 3 27 27 H 1.08995 * 109.46854 * 60.00054 * 1 2 3 28 28 H 1.08993 * 109.46968 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47216 * 240.00513 * 2 1 3 30 30 H 1.08998 * 109.47563 * 119.99831 * 2 1 3 31 31 H 1.08996 * 109.47051 * 300.00187 * 5 3 2 32 32 H 1.09000 * 109.47142 * 59.99961 * 5 3 2 33 33 H 1.08993 * 109.47301 * 179.97438 * 5 3 2 34 34 H 0.97000 * 119.99878 * 335.00131 * 6 3 2 35 35 H 1.08995 * 109.47413 * 60.00005 * 9 7 6 36 36 H 1.08993 * 109.47182 * 299.99519 * 9 7 6 37 37 H 0.97002 * 119.99591 * 180.02562 * 15 14 12 38 38 H 1.08005 * 119.99430 * 359.97438 * 21 20 10 39 39 H 1.08008 * 119.99878 * 180.27393 * 22 21 20 40 40 H 1.08000 * 119.99962 * 179.83643 * 23 22 21 41 41 H 1.07999 * 119.99465 * 180.02562 * 24 23 22 42 42 H 1.07997 * 119.99880 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5256 3.4385 -1.2995 8 8 1.7328 4.1029 -0.3064 9 6 1.1263 4.1122 -2.5871 10 6 1.0546 5.6250 -2.3701 11 1 0.3875 5.8411 -1.5356 12 6 2.4316 6.1543 -2.0627 13 1 3.2976 5.7108 -2.5312 14 6 2.5858 7.2049 -1.1831 15 7 3.7703 7.7498 -1.0109 16 14 1.1124 7.8542 -0.2362 17 1 0.9156 7.0418 0.9912 18 1 1.3512 9.2706 0.1407 19 1 -0.1011 7.7664 -1.0876 20 6 0.5289 6.2870 -3.6178 21 6 1.2510 6.2163 -4.7944 22 6 0.7667 6.8198 -5.9398 23 6 -0.4353 7.5018 -5.9065 24 6 -1.1547 7.5770 -4.7285 25 6 -0.6726 6.9698 -3.5842 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8532 0.9571 1.0571 32 1 3.9995 0.9054 -0.7161 33 1 3.9281 2.4720 0.1253 34 1 1.4871 1.5661 -2.0463 35 1 0.1501 3.7440 -2.9023 36 1 1.8646 3.8900 -3.3575 37 1 3.8789 8.4887 -0.3918 38 1 2.1920 5.6869 -4.8194 39 1 1.3287 6.7607 -6.8603 40 1 -0.8123 7.9756 -6.8008 41 1 -2.0940 8.1095 -4.7026 42 1 -1.2346 7.0289 -2.6638 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353352257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:06:38 Heat of formation + Delta-G solvation = -32.164544 kcal Electronic energy + Delta-G solvation = -21515.612928 eV Core-core repulsion = 18459.744400 eV Total energy + Delta-G solvation = -3055.868528 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.33782 -38.43170 -36.14810 -33.99350 -32.03796 -31.55693 -30.18829 -29.81414 -28.64878 -25.85667 -23.73835 -22.64291 -21.86740 -20.92478 -20.05199 -19.12781 -16.91668 -16.55288 -15.89697 -15.84019 -14.66487 -14.47380 -14.16096 -14.04150 -13.67663 -13.55953 -13.33471 -13.06517 -12.72193 -12.48867 -12.34135 -12.23218 -11.87910 -11.73212 -11.64837 -11.22738 -11.09968 -10.93753 -10.73891 -10.59018 -10.51065 -10.31181 -9.84234 -9.57941 -9.16474 -8.86130 -8.53900 -8.35685 -8.18214 -7.78988 -5.95651 -3.91842 2.12245 2.17313 3.45519 3.49620 3.53383 3.55813 3.74320 4.55214 4.61389 4.77876 5.04613 5.09838 5.33990 5.51877 5.53996 5.58078 5.60524 5.67987 5.71460 5.74837 5.84099 5.89453 5.97145 5.97334 6.04199 6.11823 6.17055 6.26891 6.31886 6.35900 6.51785 6.64831 6.72504 6.86242 7.01057 7.06387 7.16630 7.30019 7.60656 7.75217 7.85483 8.12333 8.56018 9.03353 9.08913 9.69966 11.17334 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015645 B = 0.006041 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.229253 B = 4633.794376 C = 5547.163434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.142 3.858 4 H 0.083 0.917 5 C -0.164 4.164 6 N -0.742 5.742 7 C 0.514 3.486 8 O -0.502 6.502 9 C -0.118 4.118 10 C 0.056 3.944 11 H 0.049 0.951 12 C -0.486 4.486 13 H 0.070 0.930 14 C 0.085 3.915 15 N -0.900 5.900 16 Si 0.873 3.127 17 H -0.273 1.273 18 H -0.297 1.297 19 H -0.261 1.261 20 C -0.038 4.038 21 C -0.102 4.102 22 C -0.128 4.128 23 C -0.150 4.150 24 C -0.126 4.126 25 C -0.136 4.136 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.391 0.609 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.261 0.739 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.397 -12.768 -3.993 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C 0.037 3.963 4 H 0.101 0.899 5 C -0.222 4.222 6 N -0.397 5.397 7 C 0.301 3.699 8 O -0.374 6.374 9 C -0.158 4.158 10 C 0.037 3.963 11 H 0.067 0.933 12 C -0.523 4.523 13 H 0.088 0.912 14 C -0.117 4.117 15 N -0.537 5.537 16 Si 0.702 3.298 17 H -0.198 1.198 18 H -0.224 1.224 19 H -0.186 1.186 20 C -0.038 4.038 21 C -0.120 4.120 22 C -0.146 4.146 23 C -0.168 4.168 24 C -0.145 4.145 25 C -0.155 4.155 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.224 0.776 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.137 0.863 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.130 -12.099 -3.127 14.387 hybrid contribution -0.608 0.297 0.164 0.696 sum -7.737 -11.802 -2.963 14.420 Atomic orbital electron populations 1.21761 0.95576 1.01145 1.02420 1.21817 0.96342 0.96082 1.02475 1.20836 0.94643 0.92287 0.88501 0.89858 1.22184 0.95862 1.03183 1.01015 1.46225 1.73354 1.07517 1.12646 1.20801 0.76697 0.81066 0.91380 1.90731 1.46954 1.63202 1.36521 1.21673 1.00678 0.98611 0.94879 1.18116 0.98590 0.88865 0.90745 0.93326 1.20571 0.89814 1.16283 1.25623 0.91169 1.24884 0.95358 0.95642 0.95827 1.69901 1.22904 1.24398 1.36518 0.86926 0.84248 0.77118 0.81544 1.19836 1.22368 1.18613 1.20755 0.91530 0.95544 0.96013 1.20954 0.99177 0.99784 0.92047 1.21046 0.96305 0.99062 0.98151 1.20855 0.96427 1.02020 0.97512 1.20960 0.99580 1.00493 0.93421 1.21150 0.96799 0.99862 0.97640 0.92695 0.92391 0.93003 0.91711 0.90955 0.92441 0.92921 0.91377 0.77577 0.91500 0.89861 0.92897 0.86310 0.87226 0.87463 0.87419 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.80 37.16 0.36 -1.09 16 2 C -0.13 -1.26 5.47 -26.73 -0.15 -1.41 16 3 C 0.14 1.92 2.57 -67.93 -0.17 1.75 16 4 H 0.08 1.32 7.58 -51.93 -0.39 0.93 16 5 C -0.16 -2.25 9.48 37.16 0.35 -1.90 16 6 N -0.74 -10.76 4.53 -53.80 -0.24 -11.00 16 7 C 0.51 9.98 7.55 -10.98 -0.08 9.90 16 8 O -0.50 -12.31 14.66 5.56 0.08 -12.23 16 9 C -0.12 -2.20 4.94 -27.88 -0.14 -2.33 16 10 C 0.06 1.29 1.28 -92.92 -0.12 1.17 16 11 H 0.05 1.19 4.79 -51.93 -0.25 0.94 16 12 C -0.49 -13.43 6.94 -34.44 -0.24 -13.66 16 13 H 0.07 2.10 8.06 -52.49 -0.42 1.67 16 14 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 15 N -0.90 -28.33 13.96 55.43 0.77 -27.55 16 16 Si 0.87 23.05 27.04 -169.99 -4.60 18.45 16 17 H -0.27 -7.38 7.11 56.52 0.40 -6.98 16 18 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 19 H -0.26 -6.39 5.15 56.52 0.29 -6.10 16 20 C -0.04 -0.80 4.77 -104.62 -0.50 -1.30 16 21 C -0.10 -1.99 8.87 -39.59 -0.35 -2.34 16 22 C -0.13 -2.19 10.05 -39.59 -0.40 -2.59 16 23 C -0.15 -2.47 10.05 -39.58 -0.40 -2.86 16 24 C -0.13 -2.19 10.05 -39.59 -0.40 -2.59 16 25 C -0.14 -2.71 9.13 -39.59 -0.36 -3.07 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.58 7.75 -51.93 -0.40 0.17 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.39 4.43 8.60 -40.82 -0.35 4.08 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.45 7.80 -51.93 -0.41 1.05 16 37 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 38 H 0.12 2.30 7.77 -52.48 -0.41 1.89 16 39 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 40 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.11 2.18 6.95 -52.49 -0.36 1.82 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -33.43 342.88 -8.40 -41.83 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.89 Total: 5.25 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -2.69 Total: -19.91 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.53 Total: -38.55 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.08 Total: -12.23 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.60 Total: 18.45 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.43 -8.40 -41.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353352257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.664 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds