Wall clock time and date at job start Mon Mar 30 2020 20:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35906 * 117.00082 * 2 1 4 4 C 1.38732 * 120.05382 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94339 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.05196 * 359.97438 * 5 4 3 7 7 C 1.50708 * 119.94130 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.46668 * 14.04518 * 7 6 5 9 9 C 1.53000 * 109.47000 * 254.04589 * 7 6 5 10 10 N 1.46896 * 109.47193 * 134.04361 * 7 6 5 11 11 C 1.46900 * 111.00188 * 205.53225 * 10 7 6 12 12 C 1.52995 * 109.47206 * 184.04032 * 11 10 7 13 13 C 1.50706 * 115.54917 * 272.33416 * 12 11 10 14 14 H 1.07997 * 119.99341 * 114.85982 * 13 12 11 15 15 C 1.37873 * 120.00135 * 294.85655 * 13 12 11 16 16 N 1.31514 * 120.00188 * 356.18055 * 15 13 12 17 17 Si 1.86797 * 119.99901 * 176.17624 * 15 13 12 18 18 H 1.48505 * 109.47195 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47402 * 120.00242 * 17 15 13 20 20 H 1.48501 * 109.47274 * 240.00000 * 17 15 13 21 21 C 1.53004 * 117.49453 * 126.62962 * 12 11 10 22 22 C 1.53002 * 117.49885 * 58.00693 * 12 11 10 23 23 C 1.38260 * 120.11562 * 0.27384 * 6 5 4 24 24 C 1.38144 * 120.05560 * 359.45198 * 23 6 5 25 25 H 1.08994 * 109.47314 * 59.99425 * 1 2 3 26 26 H 1.08993 * 109.47490 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46939 * 299.99731 * 1 2 3 28 28 H 1.08001 * 120.02676 * 359.95646 * 4 3 2 29 29 H 1.08001 * 119.97165 * 180.02562 * 5 4 3 30 30 H 1.08996 * 109.47197 * 179.97438 * 9 7 6 31 31 H 1.09002 * 109.47026 * 299.99946 * 9 7 6 32 32 H 1.09008 * 109.47039 * 59.99545 * 9 7 6 33 33 H 1.00902 * 111.00211 * 329.49103 * 10 7 6 34 34 H 1.09000 * 109.46717 * 64.03986 * 11 10 7 35 35 H 1.08998 * 109.46919 * 304.04509 * 11 10 7 36 36 H 0.97001 * 120.00113 * 185.02329 * 16 15 13 37 37 H 1.08992 * 117.49968 * 359.97438 * 21 12 11 38 38 H 1.09003 * 117.49525 * 145.02301 * 21 12 11 39 39 H 1.08999 * 117.50047 * 214.97827 * 22 12 11 40 40 H 1.08994 * 117.49529 * 359.97438 * 22 12 11 41 41 H 1.08002 * 119.97207 * 179.70426 * 23 6 5 42 42 H 1.08004 * 120.03376 * 180.27435 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5169 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0185 -0.0028 8 1 5.0393 4.8894 -0.2525 9 6 3.8649 5.6539 1.3838 10 7 3.3503 5.8912 -0.9987 11 6 4.2861 6.9204 -1.4709 12 6 3.5610 7.8686 -2.4280 13 6 3.5507 7.4486 -3.8753 14 1 2.6179 7.1965 -4.3576 15 6 4.7320 7.3862 -4.5835 16 7 5.8578 7.7649 -4.0191 17 14 4.7333 6.7637 -6.3447 18 1 3.3490 6.4031 -6.7433 19 1 5.2460 7.8273 -7.2453 20 1 5.6059 5.5664 -6.4459 21 6 3.6330 9.3670 -2.1272 22 6 2.3280 8.6022 -1.8964 23 6 1.9212 3.6048 0.0041 24 6 1.2916 2.3752 -0.0011 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0208 0.3799 -0.0002 29 1 5.1346 2.5749 -0.0019 30 1 4.3601 6.6248 1.3831 31 1 2.8118 5.7829 1.6334 32 1 4.3368 5.0062 2.1228 33 1 2.9849 5.3533 -1.7702 34 1 5.1172 6.4444 -1.9913 35 1 4.6660 7.4844 -0.6191 36 1 6.6764 7.7903 -4.5389 37 1 4.1965 9.6772 -1.2473 38 1 3.6729 10.0494 -2.9762 39 1 1.5095 8.7814 -2.5935 40 1 2.0333 8.4089 -0.8650 41 1 1.3344 4.5114 0.0085 42 1 0.2129 2.3202 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090340310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:14 Heat of formation + Delta-G solvation = 6.938968 kcal Electronic energy + Delta-G solvation = -21080.813171 eV Core-core repulsion = 18026.640298 eV Total energy + Delta-G solvation = -3054.172872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.13018 -38.13092 -36.76130 -34.75598 -31.97076 -30.97888 -30.51487 -28.63984 -27.18351 -25.68940 -24.42474 -22.96315 -21.97055 -20.97981 -19.88525 -18.99150 -18.13029 -16.38697 -16.05028 -15.79357 -15.53591 -14.69134 -14.56756 -14.29826 -13.77831 -13.57479 -13.55506 -13.41411 -12.85678 -12.51905 -12.38821 -11.98186 -11.84643 -11.68764 -11.38495 -11.17947 -10.96481 -10.92268 -10.81415 -10.66099 -10.42908 -10.37093 -10.08070 -9.31286 -8.88501 -8.74729 -8.46594 -8.09915 -7.95704 -7.50091 -6.01876 -4.07120 1.45076 1.53483 3.22961 3.27421 3.36424 3.40237 3.86677 4.40786 4.77605 4.84743 4.95508 5.00703 5.04911 5.09245 5.24401 5.30213 5.51611 5.52687 5.62842 5.64849 5.81395 5.83433 6.10012 6.15408 6.22354 6.27585 6.39257 6.46726 6.55376 6.58852 6.64311 6.79325 6.84902 6.91592 6.98940 7.03123 7.18902 7.40070 7.54118 7.62997 7.91197 8.01745 8.27436 8.52193 8.95443 9.57338 11.05814 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017264 B = 0.004583 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.522854 B = 6108.668631 C = 6799.243942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.116 3.884 4 C -0.154 4.154 5 C -0.076 4.076 6 C -0.113 4.113 7 C 0.123 3.877 8 H 0.045 0.955 9 C -0.131 4.131 10 N -0.678 5.678 11 C 0.106 3.894 12 C 0.053 3.947 13 C -0.492 4.492 14 H 0.059 0.941 15 C 0.070 3.930 16 N -0.880 5.880 17 Si 0.886 3.114 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.180 4.180 22 C -0.192 4.192 23 C -0.056 4.056 24 C -0.209 4.209 25 H 0.055 0.945 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.344 0.656 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.259 0.741 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.135 0.865 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.732 -11.581 9.961 16.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.072 3.928 4 C -0.173 4.173 5 C -0.095 4.095 6 C -0.114 4.114 7 C 0.013 3.987 8 H 0.063 0.937 9 C -0.189 4.189 10 N -0.309 5.309 11 C -0.022 4.022 12 C 0.052 3.948 13 C -0.530 4.530 14 H 0.077 0.923 15 C -0.133 4.133 16 N -0.518 5.518 17 Si 0.714 3.286 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.218 4.218 22 C -0.229 4.229 23 C -0.074 4.074 24 C -0.228 4.228 25 H 0.074 0.926 26 H 0.114 0.886 27 H 0.072 0.928 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.162 0.838 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.152 0.848 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.714 -11.400 10.408 16.834 hybrid contribution 0.491 -0.583 -1.624 1.794 sum -6.223 -11.983 8.784 16.108 Atomic orbital electron populations 1.23009 0.78682 1.03565 1.01416 1.86035 1.21179 1.27321 1.89070 1.19024 0.92361 0.83994 0.97465 1.20325 0.91293 0.98407 1.07274 1.20903 0.99797 0.91081 0.97720 1.20012 0.93901 0.94959 1.02523 1.20367 0.95677 0.88200 0.94419 0.93733 1.21757 1.02011 1.00135 0.94972 1.60700 1.37245 1.15567 1.17429 1.21481 0.93292 0.92396 0.95027 1.18771 0.93950 0.88505 0.93545 1.20610 0.92869 1.45481 0.94008 0.92323 1.24975 0.95543 0.95019 0.97775 1.69981 0.99142 1.46937 1.35693 0.86629 0.78135 0.78649 0.85179 1.19725 1.21060 1.21053 1.22732 1.00010 0.98662 1.00389 1.22707 0.91950 1.08670 0.99609 1.20899 0.94170 0.97099 0.95273 1.21238 0.99814 0.92416 1.09351 0.92616 0.88560 0.92780 0.85604 0.85575 0.92537 0.92306 0.93389 0.83810 0.93516 0.94199 0.93138 0.92164 0.90730 0.91293 0.91011 0.84758 0.85743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.97 10.50 -19.44 -0.20 -4.17 16 3 C 0.12 1.56 6.69 -39.22 -0.26 1.29 16 4 C -0.15 -2.05 9.99 -39.43 -0.39 -2.45 16 5 C -0.08 -1.05 9.66 -39.61 -0.38 -1.43 16 6 C -0.11 -1.68 4.66 -104.60 -0.49 -2.17 16 7 C 0.12 2.00 2.81 -68.86 -0.19 1.80 16 8 H 0.04 0.76 7.64 -51.93 -0.40 0.37 16 9 C -0.13 -1.90 9.34 37.16 0.35 -1.55 16 10 N -0.68 -12.84 5.69 -107.95 -0.61 -13.46 16 11 C 0.11 2.39 5.28 -3.83 -0.02 2.37 16 12 C 0.05 1.29 1.53 -155.66 -0.24 1.05 16 13 C -0.49 -13.24 8.82 -34.44 -0.30 -13.54 16 14 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 15 C 0.07 1.89 5.26 -17.82 -0.09 1.79 16 16 N -0.88 -24.69 12.43 55.43 0.69 -24.01 16 17 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.18 -4.24 9.88 -26.73 -0.26 -4.50 16 22 C -0.19 -4.23 9.79 -26.73 -0.26 -4.49 16 23 C -0.06 -0.79 9.01 -39.61 -0.36 -1.15 16 24 C -0.21 -2.70 9.04 -39.43 -0.36 -3.06 16 25 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.13 1.55 7.99 -52.49 -0.42 1.13 16 30 H 0.06 0.86 7.43 -51.93 -0.39 0.47 16 31 H 0.06 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.34 6.88 8.18 -39.29 -0.32 6.56 16 34 H 0.05 1.19 7.13 -51.93 -0.37 0.82 16 35 H 0.04 0.88 7.14 -51.93 -0.37 0.51 16 36 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 37 H 0.06 1.35 8.04 -51.93 -0.42 0.93 16 38 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16 39 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.13 1.88 7.91 -52.49 -0.42 1.47 16 42 H 0.12 1.32 6.30 -52.48 -0.33 0.99 16 LS Contribution 347.09 15.07 5.23 5.23 Total: -1.00 -28.51 347.09 -8.92 -37.43 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.72 Total: 7.75 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -2.28 Total: -24.80 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.08 Total: -37.46 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.20 Total: -4.17 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.51 -8.92 -37.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090340310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.364 kcal (2) G-P(sol) polarization free energy of solvation -28.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds