Wall clock time and date at job start Mon Mar 30 2020 20:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.52458 * 2 1 4 4 C 1.53119 * 109.57248 * 239.84088 * 2 1 3 5 5 C 1.53039 * 109.28129 * 182.40692 * 4 2 1 6 6 N 1.46849 * 109.51663 * 59.18309 * 5 4 2 7 7 C 1.46903 * 110.99869 * 174.16014 * 6 5 4 8 8 C 1.50698 * 109.47270 * 293.95613 * 7 6 5 9 9 C 1.38242 * 119.99570 * 269.72757 * 8 7 6 10 10 C 1.38238 * 119.99628 * 179.78883 * 9 8 7 11 11 C 1.38235 * 119.99904 * 0.43433 * 10 9 8 12 12 C 1.38235 * 120.00137 * 359.81709 * 11 10 9 13 13 C 1.38229 * 120.00103 * 359.97434 * 12 11 10 14 14 C 1.46847 * 111.20086 * 298.25345 * 6 5 4 15 15 C 1.53040 * 109.51901 * 61.74561 * 14 6 5 16 16 H 1.09001 * 109.53665 * 180.85902 * 15 14 6 17 17 O 1.42905 * 109.50506 * 60.76270 * 15 14 6 18 18 C 1.34932 * 116.99735 * 90.19428 * 17 15 14 19 19 H 1.07996 * 120.00132 * 359.97438 * 18 17 15 20 20 C 1.38638 * 119.99174 * 180.02562 * 18 17 15 21 21 N 1.31576 * 120.00611 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99326 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47127 * 59.99649 * 22 20 18 24 24 H 1.48504 * 109.46905 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47238 * 299.99998 * 22 20 18 26 26 H 1.09004 * 109.46491 * 299.87353 * 1 2 3 27 27 H 1.09001 * 109.47049 * 59.86758 * 1 2 3 28 28 H 1.08999 * 109.47090 * 179.87623 * 1 2 3 29 29 H 1.08998 * 109.50380 * 302.35561 * 4 2 1 30 30 H 1.09000 * 109.50018 * 62.46681 * 4 2 1 31 31 H 1.08996 * 109.46170 * 179.19395 * 5 4 2 32 32 H 1.08993 * 109.46531 * 299.16860 * 5 4 2 33 33 H 1.09007 * 109.46997 * 53.94968 * 7 6 5 34 34 H 1.09002 * 109.47539 * 173.95312 * 7 6 5 35 35 H 1.07994 * 119.99836 * 359.97438 * 9 8 7 36 36 H 1.08001 * 119.99654 * 180.27362 * 10 9 8 37 37 H 1.08001 * 119.99995 * 179.83182 * 11 10 9 38 38 H 1.07998 * 119.99824 * 179.97438 * 12 11 10 39 39 H 1.08006 * 120.00286 * 179.97438 * 13 12 11 40 40 H 1.08993 * 109.46567 * 301.73146 * 14 6 5 41 41 H 1.08996 * 109.46318 * 181.75782 * 14 6 5 42 42 H 0.96997 * 119.99847 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0430 -0.7248 -1.2474 5 6 3.5721 -0.7736 -1.2106 6 7 4.0115 -1.4768 0.0014 7 6 5.4685 -1.6644 0.0022 8 6 5.8552 -2.5992 -1.1148 9 6 5.9174 -3.9611 -0.8860 10 6 6.2678 -4.8190 -1.9117 11 6 6.5648 -4.3142 -3.1639 12 6 6.5077 -2.9519 -3.3913 13 6 6.1531 -2.0944 -2.3668 14 6 3.5710 -0.7732 1.2128 15 6 2.0418 -0.7244 1.2481 16 1 1.7147 -0.1889 2.1395 17 8 1.5223 -2.0555 1.2738 18 6 1.3241 -2.6123 2.4868 19 1 1.5567 -2.0543 3.3817 20 6 0.8229 -3.9013 2.5841 21 7 0.5400 -4.5813 1.4938 22 14 0.5477 -4.6720 4.2634 23 1 -0.4219 -3.8508 5.0320 24 1 0.0088 -6.0455 4.0953 25 1 1.8371 -4.7320 4.9977 26 1 -0.3632 0.5119 0.8912 27 1 -0.3633 0.5159 -0.8888 28 1 -0.3633 -1.0277 -0.0022 29 1 1.6468 -1.7401 -1.2671 30 1 1.7173 -0.1892 -2.1392 31 1 3.9399 -1.3016 -2.0903 32 1 3.9679 0.2420 -1.2049 33 1 5.9589 -0.7019 -0.1435 34 1 5.7796 -2.0900 0.9562 35 1 5.6892 -4.3551 0.0933 36 1 6.3121 -5.8834 -1.7341 37 1 6.8413 -4.9842 -3.9646 38 1 6.7402 -2.5575 -4.3695 39 1 6.1088 -1.0300 -2.5443 40 1 3.9667 0.2423 1.2071 41 1 3.9379 -1.3010 2.0930 42 1 0.1889 -5.4829 1.5620 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224379196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:07:48 Heat of formation + Delta-G solvation = -8.375476 kcal Electronic energy + Delta-G solvation = -21957.792025 eV Core-core repulsion = 18902.955069 eV Total energy + Delta-G solvation = -3054.836956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.46311 -38.34698 -35.58154 -33.82181 -31.44294 -31.18980 -30.70047 -29.32784 -27.48165 -24.72967 -24.23351 -22.64371 -22.00397 -21.48552 -20.53484 -18.81051 -17.32729 -16.56213 -15.48089 -15.23058 -15.04831 -14.85278 -14.08937 -14.03042 -13.94594 -13.72399 -13.19565 -12.89855 -12.75947 -12.58414 -12.22595 -12.04621 -11.79360 -11.30093 -11.29553 -11.14169 -10.99381 -10.85743 -10.79848 -10.67461 -10.28605 -10.17773 -10.05547 -9.52076 -9.28565 -8.90188 -8.66866 -8.53005 -7.85913 -7.56095 -5.80042 -3.40931 1.55715 1.63868 3.37375 3.39917 3.42415 3.93408 4.40247 4.60097 5.01089 5.04219 5.18556 5.28074 5.35880 5.38634 5.49198 5.58756 5.60764 5.68513 5.70841 5.81279 5.86964 5.96947 6.00081 6.04211 6.10925 6.22378 6.27736 6.29825 6.36937 6.40307 6.57671 6.64243 6.68031 6.72621 6.75665 6.89390 6.93244 7.04641 7.22348 7.30536 7.57048 7.66723 7.73352 8.56460 9.63213 10.36256 11.40454 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015267 B = 0.006142 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.529851 B = 4557.319510 C = 5669.706626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 H 0.056 0.944 4 C -0.105 4.105 5 C 0.060 3.940 6 N -0.506 5.506 7 C 0.093 3.907 8 C -0.067 4.067 9 C -0.091 4.091 10 C -0.121 4.121 11 C -0.127 4.127 12 C -0.127 4.127 13 C -0.117 4.117 14 C 0.042 3.958 15 C 0.105 3.895 16 H 0.040 0.960 17 O -0.259 6.259 18 C -0.354 4.354 19 H 0.055 0.945 20 C 0.026 3.974 21 N -0.884 5.884 22 Si 0.915 3.085 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.281 1.281 26 H 0.044 0.956 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.017 0.983 33 H 0.032 0.968 34 H 0.080 0.920 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.018 0.982 41 H 0.073 0.927 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.361 6.379 -7.061 14.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 H 0.074 0.926 4 C -0.143 4.143 5 C -0.068 4.068 6 N -0.230 5.230 7 C -0.034 4.034 8 C -0.067 4.067 9 C -0.109 4.109 10 C -0.139 4.139 11 C -0.145 4.145 12 C -0.145 4.145 13 C -0.136 4.136 14 C -0.086 4.086 15 C 0.044 3.956 16 H 0.058 0.942 17 O -0.172 6.172 18 C -0.434 4.434 19 H 0.073 0.927 20 C -0.172 4.172 21 N -0.527 5.527 22 Si 0.743 3.257 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.207 1.207 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.035 0.965 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.036 0.964 41 H 0.092 0.908 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.019 5.662 -7.261 13.607 hybrid contribution 0.332 0.498 1.129 1.278 sum 10.351 6.160 -6.132 13.516 Atomic orbital electron populations 1.21668 0.94925 1.03317 0.99530 1.21199 0.96356 0.97012 0.95780 0.92563 1.21522 0.93947 1.02716 0.96083 1.22112 0.96577 0.94731 0.93373 1.61694 1.09188 1.50221 1.01849 1.21040 0.89245 0.96096 0.97056 1.19789 0.97795 0.94475 0.94670 1.21113 0.97332 0.92747 0.99716 1.21148 0.99782 0.99650 0.93292 1.21070 1.01105 0.95326 0.97006 1.21017 1.01102 0.93684 0.98657 1.21002 1.00300 0.99363 0.92914 1.22709 0.98958 0.94386 0.92558 1.21761 0.90061 0.88618 0.95137 0.94227 1.85775 1.81144 1.22572 1.27755 1.20775 1.41667 0.97839 0.83131 0.92692 1.24810 0.99228 0.95956 0.97252 1.70008 1.45633 1.10877 1.26209 0.86203 0.78183 0.78573 0.82706 1.20683 1.21092 1.20685 0.93672 0.94212 0.90628 0.89371 0.92999 0.91011 0.96495 0.95041 0.90176 0.85711 0.86279 0.86601 0.86590 0.86715 0.96437 0.90812 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.04 37.16 0.34 -2.19 16 2 C -0.08 -1.57 2.62 -90.50 -0.24 -1.81 16 3 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 4 C -0.11 -1.92 5.23 -26.65 -0.14 -2.06 16 5 C 0.06 1.02 5.16 -3.83 -0.02 1.00 16 6 N -0.51 -9.57 4.53 -236.12 -1.07 -10.64 16 7 C 0.09 1.48 5.12 -4.98 -0.03 1.46 16 8 C -0.07 -1.04 4.89 -104.62 -0.51 -1.55 16 9 C -0.09 -1.44 9.70 -39.58 -0.38 -1.82 16 10 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 11 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 12 C -0.13 -1.59 10.05 -39.59 -0.40 -1.98 16 13 C -0.12 -1.60 7.88 -39.59 -0.31 -1.91 16 14 C 0.04 0.81 5.12 -3.83 -0.02 0.79 16 15 C 0.10 2.25 2.45 -26.65 -0.07 2.19 16 16 H 0.04 0.85 7.80 -51.93 -0.41 0.45 16 17 O -0.26 -7.07 8.00 -16.52 -0.13 -7.20 16 18 C -0.35 -10.19 9.78 30.88 0.30 -9.88 16 19 H 0.06 1.51 7.64 -52.49 -0.40 1.11 16 20 C 0.03 0.75 5.49 -17.51 -0.10 0.65 16 21 N -0.88 -27.63 13.67 55.48 0.76 -26.87 16 22 Si 0.92 22.24 29.55 -169.99 -5.02 17.21 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.66 7.63 -51.93 -0.40 1.26 16 29 H 0.09 1.97 7.80 -51.93 -0.40 1.57 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.19 5.75 -51.93 -0.30 0.89 16 32 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.03 0.45 8.07 -51.93 -0.42 0.03 16 34 H 0.08 1.27 7.92 -51.93 -0.41 0.86 16 35 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.11 1.39 7.95 -52.48 -0.42 0.97 16 40 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 1.50 8.01 -51.93 -0.42 1.08 16 42 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -32.21 337.66 -9.68 -41.89 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.93 Total: 1.72 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -2.37 Total: -21.21 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.31 Total: -37.51 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.13 Total: -7.20 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.21 -9.68 -41.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.515 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds