Wall clock time and date at job start Mon Mar 30 2020 20:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.52458 * 2 1 4 4 C 1.53119 * 109.57248 * 239.84088 * 2 1 3 5 5 C 1.53039 * 109.28129 * 182.40692 * 4 2 1 6 6 N 1.46849 * 109.51663 * 59.18309 * 5 4 2 7 7 C 1.46903 * 110.99869 * 174.16014 * 6 5 4 8 8 C 1.50698 * 109.47270 * 293.95613 * 7 6 5 9 9 C 1.38242 * 119.99570 * 269.72757 * 8 7 6 10 10 C 1.38238 * 119.99628 * 179.78883 * 9 8 7 11 11 C 1.38235 * 119.99904 * 0.43433 * 10 9 8 12 12 C 1.38235 * 120.00137 * 359.81709 * 11 10 9 13 13 C 1.38229 * 120.00103 * 359.97434 * 12 11 10 14 14 C 1.46847 * 111.20086 * 298.25345 * 6 5 4 15 15 C 1.53040 * 109.51901 * 61.74561 * 14 6 5 16 16 H 1.09001 * 109.53665 * 180.85902 * 15 14 6 17 17 O 1.42905 * 109.50506 * 60.76270 * 15 14 6 18 18 C 1.34932 * 116.99735 * 90.19428 * 17 15 14 19 19 H 1.07996 * 120.00132 * 359.97438 * 18 17 15 20 20 C 1.38638 * 119.99174 * 180.02562 * 18 17 15 21 21 N 1.31576 * 120.00611 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99326 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47127 * 59.99649 * 22 20 18 24 24 H 1.48504 * 109.46905 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47238 * 299.99998 * 22 20 18 26 26 H 1.09004 * 109.46491 * 299.87353 * 1 2 3 27 27 H 1.09001 * 109.47049 * 59.86758 * 1 2 3 28 28 H 1.08999 * 109.47090 * 179.87623 * 1 2 3 29 29 H 1.08998 * 109.50380 * 302.35561 * 4 2 1 30 30 H 1.09000 * 109.50018 * 62.46681 * 4 2 1 31 31 H 1.08996 * 109.46170 * 179.19395 * 5 4 2 32 32 H 1.08993 * 109.46531 * 299.16860 * 5 4 2 33 33 H 1.09007 * 109.46997 * 53.94968 * 7 6 5 34 34 H 1.09002 * 109.47539 * 173.95312 * 7 6 5 35 35 H 1.07994 * 119.99836 * 359.97438 * 9 8 7 36 36 H 1.08001 * 119.99654 * 180.27362 * 10 9 8 37 37 H 1.08001 * 119.99995 * 179.83182 * 11 10 9 38 38 H 1.07998 * 119.99824 * 179.97438 * 12 11 10 39 39 H 1.08006 * 120.00286 * 179.97438 * 13 12 11 40 40 H 1.08993 * 109.46567 * 301.73146 * 14 6 5 41 41 H 1.08996 * 109.46318 * 181.75782 * 14 6 5 42 42 H 0.96997 * 119.99847 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0430 -0.7248 -1.2474 5 6 3.5721 -0.7736 -1.2106 6 7 4.0115 -1.4768 0.0014 7 6 5.4685 -1.6644 0.0022 8 6 5.8552 -2.5992 -1.1148 9 6 5.9174 -3.9611 -0.8860 10 6 6.2678 -4.8190 -1.9117 11 6 6.5648 -4.3142 -3.1639 12 6 6.5077 -2.9519 -3.3913 13 6 6.1531 -2.0944 -2.3668 14 6 3.5710 -0.7732 1.2128 15 6 2.0418 -0.7244 1.2481 16 1 1.7147 -0.1889 2.1395 17 8 1.5223 -2.0555 1.2738 18 6 1.3241 -2.6123 2.4868 19 1 1.5567 -2.0543 3.3817 20 6 0.8229 -3.9013 2.5841 21 7 0.5400 -4.5813 1.4938 22 14 0.5477 -4.6720 4.2634 23 1 -0.4219 -3.8508 5.0320 24 1 0.0088 -6.0455 4.0953 25 1 1.8371 -4.7320 4.9977 26 1 -0.3632 0.5119 0.8912 27 1 -0.3633 0.5159 -0.8888 28 1 -0.3633 -1.0277 -0.0022 29 1 1.6468 -1.7401 -1.2671 30 1 1.7173 -0.1892 -2.1392 31 1 3.9399 -1.3016 -2.0903 32 1 3.9679 0.2420 -1.2049 33 1 5.9589 -0.7019 -0.1435 34 1 5.7796 -2.0900 0.9562 35 1 5.6892 -4.3551 0.0933 36 1 6.3121 -5.8834 -1.7341 37 1 6.8413 -4.9842 -3.9646 38 1 6.7402 -2.5575 -4.3695 39 1 6.1088 -1.0300 -2.5443 40 1 3.9667 0.2423 1.2071 41 1 3.9379 -1.3010 2.0930 42 1 0.1889 -5.4829 1.5620 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224379196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:07:48 Heat of formation + Delta-G solvation = -27.831967 kcal Electronic energy + Delta-G solvation = -21958.635722 eV Core-core repulsion = 18902.955069 eV Total energy + Delta-G solvation = -3055.680653 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.75588 -39.69652 -37.31723 -35.37874 -33.56627 -32.40128 -31.77877 -30.87442 -28.88957 -26.64084 -25.82448 -23.99343 -23.27351 -22.83593 -21.74341 -20.45915 -19.37937 -17.64090 -17.07228 -16.87564 -16.26223 -16.20376 -15.80289 -15.64849 -15.32423 -15.12670 -14.56054 -14.35207 -14.24714 -13.80980 -13.53941 -13.47216 -13.29153 -13.19632 -12.93244 -12.76996 -12.54856 -12.44995 -12.17603 -11.94109 -11.84818 -11.73221 -11.65470 -11.23273 -10.99687 -10.76076 -9.97130 -9.74294 -9.62914 -8.93827 -8.03096 -5.67171 0.48118 0.56164 1.39488 1.46035 1.52379 2.38734 2.79838 3.27300 3.30369 3.78320 3.86934 3.95437 4.01879 4.07523 4.16172 4.20825 4.29988 4.36353 4.42028 4.52272 4.58469 4.63128 4.64955 4.74348 4.76166 4.83141 4.90601 4.93929 5.03089 5.11854 5.16223 5.20556 5.24142 5.26046 5.40961 5.48426 5.60573 5.66475 5.73481 5.79488 6.16661 6.29877 6.33922 6.38123 7.40398 8.29189 9.21162 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015267 B = 0.006142 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.529851 B = 4557.319510 C = 5669.706626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 H 0.094 0.906 4 C -0.101 4.101 5 C 0.065 3.935 6 N -0.540 5.540 7 C 0.098 3.902 8 C -0.084 4.084 9 C -0.122 4.122 10 C -0.133 4.133 11 C -0.127 4.127 12 C -0.124 4.124 13 C -0.119 4.119 14 C 0.051 3.949 15 C 0.089 3.911 16 H 0.035 0.965 17 O -0.292 6.292 18 C -0.359 4.359 19 H 0.061 0.939 20 C -0.040 4.040 21 N -0.934 5.934 22 Si 0.989 3.011 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.270 1.270 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.026 0.974 29 H 0.034 0.966 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.130 0.870 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.136 0.864 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.575 8.320 -8.138 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.100 4.100 3 H 0.113 0.887 4 C -0.138 4.138 5 C -0.062 4.062 6 N -0.265 5.265 7 C -0.029 4.029 8 C -0.085 4.085 9 C -0.140 4.140 10 C -0.151 4.151 11 C -0.145 4.145 12 C -0.142 4.142 13 C -0.138 4.138 14 C -0.077 4.077 15 C 0.030 3.970 16 H 0.053 0.947 17 O -0.207 6.207 18 C -0.438 4.438 19 H 0.079 0.921 20 C -0.233 4.233 21 N -0.580 5.580 22 Si 0.813 3.187 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.195 1.195 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.148 0.852 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.153 0.847 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.250 7.638 -8.329 15.946 hybrid contribution -0.004 -0.034 1.387 1.387 sum 11.247 7.603 -6.943 15.248 Atomic orbital electron populations 1.21594 0.95227 1.00665 1.01352 1.21253 0.96147 0.98369 0.94228 0.88746 1.21467 0.95056 0.99970 0.97356 1.22091 0.95393 0.96139 0.92627 1.61582 1.11258 1.51363 1.02249 1.20997 0.87676 0.97277 0.96929 1.19847 0.98929 0.94071 0.95618 1.21148 0.99451 0.93850 0.99582 1.21369 0.99854 1.00142 0.93706 1.21450 0.99916 0.96238 0.96903 1.21445 0.99536 0.93456 0.99734 1.21244 0.99675 1.00675 0.92160 1.22481 0.97069 0.95878 0.92299 1.22158 0.91766 0.86334 0.96731 0.94669 1.85733 1.81968 1.25570 1.27390 1.21211 1.40433 0.98186 0.83990 0.92099 1.25914 0.99264 0.96547 1.01554 1.70204 1.47551 1.11206 1.29051 0.85055 0.78607 0.77421 0.77589 1.19200 1.20958 1.19524 0.93216 0.90983 0.95429 0.94711 0.89793 0.90653 0.93498 0.92623 0.91469 0.88001 0.85237 0.83726 0.83321 0.84660 0.93166 0.93064 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 9.04 71.98 0.65 -4.11 16 2 C -0.08 -2.90 2.62 -10.71 -0.03 -2.93 16 3 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 4 C -0.10 -3.57 5.23 30.65 0.16 -3.41 16 5 C 0.06 2.07 5.16 86.33 0.45 2.52 16 6 N -0.54 -20.29 4.53 -900.93 -4.08 -24.37 16 7 C 0.10 3.09 5.12 85.56 0.44 3.53 16 8 C -0.08 -2.58 4.89 -19.86 -0.10 -2.68 16 9 C -0.12 -4.02 9.70 22.27 0.22 -3.80 16 10 C -0.13 -3.72 10.05 22.27 0.22 -3.49 16 11 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 12 C -0.12 -2.73 10.05 22.27 0.22 -2.51 16 13 C -0.12 -2.98 7.88 22.27 0.18 -2.80 16 14 C 0.05 1.94 5.12 86.33 0.44 2.39 16 15 C 0.09 3.88 2.45 30.65 0.08 3.95 16 16 H 0.04 1.52 7.80 -2.39 -0.02 1.50 16 17 O -0.29 -16.63 8.00 -82.01 -0.66 -17.29 16 18 C -0.36 -21.30 9.78 67.92 0.66 -20.64 16 19 H 0.06 3.42 7.64 -2.91 -0.02 3.39 16 20 C -0.04 -2.41 5.49 84.83 0.47 -1.95 16 21 N -0.93 -61.04 13.67 21.61 0.30 -60.74 16 22 Si 0.99 46.77 29.55 68.60 2.03 48.79 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 24 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.03 1.24 7.63 -2.39 -0.02 1.22 16 29 H 0.03 1.60 7.80 -2.39 -0.02 1.58 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.08 2.35 5.75 -2.39 -0.01 2.33 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.46 8.07 -2.38 -0.02 1.44 16 34 H 0.07 2.21 7.92 -2.39 -0.02 2.19 16 35 H 0.10 3.67 8.06 -2.91 -0.02 3.65 16 36 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 37 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 38 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.14 2.76 7.95 -2.91 -0.02 2.74 16 40 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.05 2.14 8.01 -2.39 -0.02 2.12 16 42 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -73.76 337.66 2.83 -70.93 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.97 Total: 21.35 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 4.28 Total: -38.67 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -3.78 Total: -85.12 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.66 Total: -17.29 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -73.76 2.83 -70.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.099 kcal (2) G-P(sol) polarization free energy of solvation -73.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds