Wall clock time and date at job start Mon Mar 30 2020 20:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.45237 * 2 1 4 4 C 1.53040 * 109.46057 * 240.03239 * 2 1 3 5 5 C 1.53117 * 109.27888 * 180.80522 * 4 2 1 6 6 C 1.53122 * 109.16312 * 57.65147 * 5 4 2 7 7 H 1.08999 * 109.50451 * 62.32744 * 6 5 4 8 8 O 1.42898 * 109.50032 * 182.40721 * 6 5 4 9 9 C 1.53038 * 109.27636 * 302.34698 * 6 5 4 10 10 N 1.46846 * 109.52457 * 59.18008 * 9 6 5 11 11 C 1.46900 * 111.00190 * 174.16012 * 10 9 6 12 12 C 1.50698 * 109.46988 * 294.28867 * 11 10 9 13 13 C 1.37630 * 120.12803 * 105.27099 * 12 11 10 14 14 C 1.38616 * 120.24560 * 180.02562 * 13 12 11 15 15 C 1.38658 * 120.50544 * 359.97438 * 14 13 12 16 16 C 1.37595 * 120.24605 * 359.76257 * 15 14 13 17 17 C 1.40706 * 120.12567 * 285.29308 * 12 11 10 18 18 C 1.41397 * 120.24547 * 359.97438 * 17 12 11 19 19 H 1.08001 * 119.99640 * 330.36578 * 18 17 12 20 20 C 1.39939 * 120.00308 * 150.36550 * 18 17 12 21 21 N 1.30823 * 119.99875 * 334.04206 * 20 18 17 22 22 Si 1.86802 * 120.00323 * 154.04070 * 20 18 17 23 23 H 1.48499 * 109.46713 * 270.00332 * 22 20 18 24 24 H 1.48495 * 109.47185 * 150.00226 * 22 20 18 25 25 H 1.48501 * 109.47007 * 29.99868 * 22 20 18 26 26 H 1.08994 * 109.46863 * 306.74976 * 1 2 3 27 27 H 1.08997 * 109.47398 * 66.75194 * 1 2 3 28 28 H 1.09000 * 109.47028 * 186.75026 * 1 2 3 29 29 H 1.09005 * 109.49909 * 300.74079 * 4 2 1 30 30 H 1.08997 * 109.50847 * 60.81886 * 4 2 1 31 31 H 1.09004 * 109.52595 * 177.55711 * 5 4 2 32 32 H 1.09002 * 109.52173 * 297.68394 * 5 4 2 33 33 H 0.96702 * 114.00440 * 299.99642 * 8 6 5 34 34 H 1.08994 * 109.46203 * 299.16244 * 9 6 5 35 35 H 1.09000 * 109.46045 * 179.19285 * 9 6 5 36 36 H 1.09002 * 109.47049 * 174.28627 * 11 10 9 37 37 H 1.08999 * 109.47049 * 54.28556 * 11 10 9 38 38 H 1.07999 * 119.88162 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.74879 * 180.02562 * 14 13 12 40 40 H 1.08000 * 119.87898 * 180.02562 * 15 14 13 41 41 H 1.07999 * 120.12808 * 180.25507 * 16 15 14 42 42 H 0.96999 * 120.00097 * 355.51446 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5709 -0.7360 -1.2357 6 6 4.0549 -1.4188 0.0465 7 1 3.7132 -2.4538 0.0589 8 8 5.4827 -1.3871 0.0942 9 6 3.4866 -0.6777 1.2589 10 7 2.0194 -0.6918 1.1993 11 6 1.4374 -0.1107 2.4165 12 6 1.7638 -0.9879 3.5976 13 6 2.7227 -0.5973 4.5042 14 6 3.0252 -1.4026 5.5912 15 6 2.3669 -2.6084 5.7786 16 6 1.4008 -3.0164 4.8879 17 6 1.0895 -2.2098 3.7774 18 6 0.1024 -2.6214 2.8525 19 1 -0.4785 -1.8838 2.3188 20 6 -0.1218 -3.9844 2.6286 21 7 0.8386 -4.8481 2.8366 22 14 -1.7923 -4.5708 2.0327 23 1 -2.6560 -4.8748 3.2018 24 1 -1.6227 -5.7958 1.2107 25 1 -2.4262 -3.5078 1.2121 26 1 -0.3633 0.6148 0.8234 27 1 -0.3634 0.4056 -0.9442 28 1 -0.3633 -1.0205 0.1208 29 1 1.6659 -1.7446 -1.2577 30 1 1.6889 -0.1985 -2.1400 31 1 3.9379 -1.2862 -2.1022 32 1 3.9457 0.2871 -1.2684 33 1 5.9111 -1.8366 -0.6472 34 1 3.8404 0.3532 1.2530 35 1 3.8176 -1.1700 2.1734 36 1 0.3555 -0.0402 2.3041 37 1 1.8515 0.8846 2.5778 38 1 3.2415 0.3401 4.3684 39 1 3.7788 -1.0880 6.2979 40 1 2.6102 -3.2277 6.6293 41 1 0.8863 -3.9541 5.0380 42 1 1.7242 -4.5386 3.0830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235512429.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:08:15 Heat of formation + Delta-G solvation = -43.106253 kcal Electronic energy + Delta-G solvation = -22507.288746 eV Core-core repulsion = 19450.945751 eV Total energy + Delta-G solvation = -3056.342996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.32592 -37.65003 -36.14139 -33.73008 -32.98120 -31.21762 -29.91511 -29.15670 -26.51635 -25.35452 -24.70366 -22.58149 -21.15254 -20.87049 -19.70566 -19.31291 -17.61886 -16.99219 -15.70324 -15.07999 -14.67493 -14.42531 -14.33593 -14.05439 -13.94762 -13.35314 -13.19748 -13.06649 -12.48708 -12.16916 -12.14381 -11.85594 -11.57485 -11.54070 -11.26578 -11.18160 -10.98298 -10.78701 -10.60074 -10.45887 -10.37307 -10.23883 -9.98377 -9.58486 -9.54000 -9.23803 -8.79998 -7.64528 -7.45860 -7.41964 -7.04610 -4.25436 2.80886 2.88523 3.20936 3.33378 3.38798 4.10033 4.12095 4.68348 4.83535 4.95084 5.06773 5.15134 5.43166 5.57735 5.64237 5.66348 5.80056 5.88774 5.94379 5.97664 6.04959 6.10871 6.13993 6.19026 6.27372 6.31629 6.39650 6.43610 6.53170 6.59359 6.67617 6.80199 7.02793 7.26107 7.52244 7.66115 7.70925 7.80808 7.88289 7.96281 7.98141 8.02827 8.34463 8.42879 8.90428 9.04188 10.20916 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013043 B = 0.008507 C = 0.006499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.297076 B = 3290.440193 C = 4307.232954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.081 3.919 3 H 0.028 0.972 4 C -0.108 4.108 5 C -0.149 4.149 6 C 0.107 3.893 7 H 0.066 0.934 8 O -0.570 6.570 9 C 0.072 3.928 10 N -0.505 5.505 11 C 0.129 3.871 12 C -0.197 4.197 13 C -0.076 4.076 14 C -0.258 4.258 15 C -0.085 4.085 16 C -0.219 4.219 17 C 0.118 3.882 18 C -0.495 4.495 19 H 0.076 0.924 20 C 0.042 3.958 21 N -0.801 5.801 22 Si 1.060 2.940 23 H -0.278 1.278 24 H -0.279 1.279 25 H -0.277 1.277 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.373 0.627 34 H 0.024 0.976 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.012 0.988 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.335 5.820 -7.819 9.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 H 0.046 0.954 4 C -0.146 4.146 5 C -0.187 4.187 6 C 0.048 3.952 7 H 0.084 0.916 8 O -0.375 6.375 9 C -0.056 4.056 10 N -0.231 5.231 11 C 0.003 3.997 12 C -0.199 4.199 13 C -0.095 4.095 14 C -0.278 4.278 15 C -0.104 4.104 16 C -0.238 4.238 17 C 0.115 3.885 18 C -0.523 4.523 19 H 0.094 0.906 20 C -0.180 4.180 21 N -0.424 5.424 22 Si 0.885 3.115 23 H -0.204 1.204 24 H -0.205 1.205 25 H -0.202 1.202 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.220 0.780 34 H 0.042 0.958 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.030 0.970 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.118 0.882 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.225 4.275 -7.702 8.812 hybrid contribution 1.439 1.875 -0.007 2.363 sum 1.664 6.150 -7.709 10.001 Atomic orbital electron populations 1.21913 0.94378 1.03526 1.00609 1.21585 0.95582 0.94588 0.91035 0.95411 1.21554 0.94241 1.02053 0.96738 1.22298 0.97058 1.01220 0.98139 1.21808 0.79515 0.99440 0.94464 0.91593 1.86471 1.19444 1.80518 1.51040 1.21745 0.88027 0.97767 0.98077 1.61758 1.05035 1.54921 1.01387 1.20640 0.99165 0.92549 0.87345 1.19400 1.02380 1.00409 0.97678 1.20440 0.96763 0.97283 0.94996 1.20237 1.07171 0.98364 1.02013 1.20596 0.96550 0.95540 0.97697 1.21129 1.03165 1.02514 0.96988 1.17394 0.89770 0.90385 0.90940 1.20385 1.16579 0.94384 1.20997 0.90555 1.26793 1.04087 0.93309 0.93808 1.70396 1.03905 1.39264 1.28841 0.83700 0.74010 0.76397 0.77349 1.20357 1.20480 1.20246 0.92632 0.93045 0.90699 0.90626 0.91855 0.92126 0.91971 0.78040 0.95795 0.89366 0.90315 0.97020 0.89887 0.89678 0.89608 0.88200 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.55 37.16 0.32 -1.90 16 2 C 0.08 1.28 2.44 -67.72 -0.17 1.12 16 3 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 4 C -0.11 -1.52 5.37 -26.65 -0.14 -1.66 16 5 C -0.15 -2.02 5.63 -26.61 -0.15 -2.17 16 6 C 0.11 1.75 3.63 -26.65 -0.10 1.66 16 7 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 8 O -0.57 -8.81 13.32 -35.23 -0.47 -9.28 16 9 C 0.07 1.36 4.95 -3.83 -0.02 1.34 16 10 N -0.51 -9.65 4.38 -228.12 -1.00 -10.65 16 11 C 0.13 2.62 4.15 -4.98 -0.02 2.60 16 12 C -0.20 -4.59 4.46 -103.91 -0.46 -5.05 16 13 C -0.08 -1.71 8.95 -39.66 -0.35 -2.06 16 14 C -0.26 -5.87 10.05 -39.29 -0.39 -6.26 16 15 C -0.09 -2.01 10.02 -39.66 -0.40 -2.41 16 16 C -0.22 -5.58 8.03 -38.87 -0.31 -5.89 16 17 C 0.12 3.01 5.19 -106.82 -0.55 2.46 16 18 C -0.50 -12.47 8.23 -37.74 -0.31 -12.78 16 19 H 0.08 1.88 6.63 -52.49 -0.35 1.54 16 20 C 0.04 1.03 4.89 -17.34 -0.08 0.95 16 21 N -0.80 -21.19 12.53 55.55 0.70 -20.49 16 22 Si 1.06 21.60 30.00 -169.99 -5.10 16.50 16 23 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 26 H 0.05 0.84 6.52 -51.93 -0.34 0.50 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.28 8.01 -51.93 -0.42 0.87 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.37 3.91 9.08 45.56 0.41 4.33 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.09 1.93 6.56 -51.93 -0.34 1.59 16 36 H 0.08 1.60 4.70 -51.93 -0.24 1.36 16 37 H 0.01 0.23 7.93 -51.93 -0.41 -0.19 16 38 H 0.08 1.70 7.99 -52.49 -0.42 1.28 16 39 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.10 2.64 6.87 -52.49 -0.36 2.28 16 42 H 0.30 8.22 6.88 -40.82 -0.28 7.94 16 LS Contribution 328.52 15.07 4.95 4.95 Total: -1.00 -27.56 328.52 -9.84 -37.40 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -5.77 Total: 11.63 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: -3.15 Total: -30.07 kcal Atomic # 7 Polarization: -30.83 SS G_CDS: -0.30 Total: -31.14 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.47 Total: -9.28 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.10 Total: 16.50 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.56 -9.84 -37.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512429.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.705 kcal (2) G-P(sol) polarization free energy of solvation -27.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds