Wall clock time and date at job start Mon Mar 30 2020 20:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.45237 * 2 1 4 4 C 1.53040 * 109.46057 * 240.03239 * 2 1 3 5 5 C 1.53117 * 109.27888 * 180.80522 * 4 2 1 6 6 C 1.53122 * 109.16312 * 57.65147 * 5 4 2 7 7 H 1.08999 * 109.50451 * 62.32744 * 6 5 4 8 8 O 1.42898 * 109.50032 * 182.40721 * 6 5 4 9 9 C 1.53038 * 109.27636 * 302.34698 * 6 5 4 10 10 N 1.46846 * 109.52457 * 59.18008 * 9 6 5 11 11 C 1.46900 * 111.00190 * 174.16012 * 10 9 6 12 12 C 1.50698 * 109.46988 * 294.28867 * 11 10 9 13 13 C 1.37630 * 120.12803 * 105.27099 * 12 11 10 14 14 C 1.38616 * 120.24560 * 180.02562 * 13 12 11 15 15 C 1.38658 * 120.50544 * 359.97438 * 14 13 12 16 16 C 1.37595 * 120.24605 * 359.76257 * 15 14 13 17 17 C 1.40706 * 120.12567 * 285.29308 * 12 11 10 18 18 C 1.41397 * 120.24547 * 359.97438 * 17 12 11 19 19 H 1.08001 * 119.99640 * 330.36578 * 18 17 12 20 20 C 1.39939 * 120.00308 * 150.36550 * 18 17 12 21 21 N 1.30823 * 119.99875 * 334.04206 * 20 18 17 22 22 Si 1.86802 * 120.00323 * 154.04070 * 20 18 17 23 23 H 1.48499 * 109.46713 * 270.00332 * 22 20 18 24 24 H 1.48495 * 109.47185 * 150.00226 * 22 20 18 25 25 H 1.48501 * 109.47007 * 29.99868 * 22 20 18 26 26 H 1.08994 * 109.46863 * 306.74976 * 1 2 3 27 27 H 1.08997 * 109.47398 * 66.75194 * 1 2 3 28 28 H 1.09000 * 109.47028 * 186.75026 * 1 2 3 29 29 H 1.09005 * 109.49909 * 300.74079 * 4 2 1 30 30 H 1.08997 * 109.50847 * 60.81886 * 4 2 1 31 31 H 1.09004 * 109.52595 * 177.55711 * 5 4 2 32 32 H 1.09002 * 109.52173 * 297.68394 * 5 4 2 33 33 H 0.96702 * 114.00440 * 299.99642 * 8 6 5 34 34 H 1.08994 * 109.46203 * 299.16244 * 9 6 5 35 35 H 1.09000 * 109.46045 * 179.19285 * 9 6 5 36 36 H 1.09002 * 109.47049 * 174.28627 * 11 10 9 37 37 H 1.08999 * 109.47049 * 54.28556 * 11 10 9 38 38 H 1.07999 * 119.88162 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.74879 * 180.02562 * 14 13 12 40 40 H 1.08000 * 119.87898 * 180.02562 * 15 14 13 41 41 H 1.07999 * 120.12808 * 180.25507 * 16 15 14 42 42 H 0.96999 * 120.00097 * 355.51446 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5709 -0.7360 -1.2357 6 6 4.0549 -1.4188 0.0465 7 1 3.7132 -2.4538 0.0589 8 8 5.4827 -1.3871 0.0942 9 6 3.4866 -0.6777 1.2589 10 7 2.0194 -0.6918 1.1993 11 6 1.4374 -0.1107 2.4165 12 6 1.7638 -0.9879 3.5976 13 6 2.7227 -0.5973 4.5042 14 6 3.0252 -1.4026 5.5912 15 6 2.3669 -2.6084 5.7786 16 6 1.4008 -3.0164 4.8879 17 6 1.0895 -2.2098 3.7774 18 6 0.1024 -2.6214 2.8525 19 1 -0.4785 -1.8838 2.3188 20 6 -0.1218 -3.9844 2.6286 21 7 0.8386 -4.8481 2.8366 22 14 -1.7923 -4.5708 2.0327 23 1 -2.6560 -4.8748 3.2018 24 1 -1.6227 -5.7958 1.2107 25 1 -2.4262 -3.5078 1.2121 26 1 -0.3633 0.6148 0.8234 27 1 -0.3634 0.4056 -0.9442 28 1 -0.3633 -1.0205 0.1208 29 1 1.6659 -1.7446 -1.2577 30 1 1.6889 -0.1985 -2.1400 31 1 3.9379 -1.2862 -2.1022 32 1 3.9457 0.2871 -1.2684 33 1 5.9111 -1.8366 -0.6472 34 1 3.8404 0.3532 1.2530 35 1 3.8176 -1.1700 2.1734 36 1 0.3555 -0.0402 2.3041 37 1 1.8515 0.8846 2.5778 38 1 3.2415 0.3401 4.3684 39 1 3.7788 -1.0880 6.2979 40 1 2.6102 -3.2277 6.6293 41 1 0.8863 -3.9541 5.0380 42 1 1.7242 -4.5386 3.0830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235512429.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:08:15 Heat of formation + Delta-G solvation = -60.173222 kcal Electronic energy + Delta-G solvation = -22508.028826 eV Core-core repulsion = 19450.945751 eV Total energy + Delta-G solvation = -3057.083075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.74967 -39.36793 -37.45934 -35.61319 -34.40249 -32.49508 -31.58837 -31.03716 -27.95425 -26.96511 -26.38523 -24.01306 -22.80961 -22.40004 -21.42995 -20.65013 -19.47652 -18.27288 -17.09895 -16.80358 -16.28199 -16.11068 -15.66606 -15.57413 -15.53909 -14.90186 -14.66075 -14.28744 -14.04974 -13.76987 -13.66860 -13.53837 -13.22256 -13.02414 -12.66486 -12.58813 -12.52286 -12.39559 -12.10789 -11.94356 -11.80141 -11.67723 -11.46872 -11.19139 -11.06774 -10.77855 -10.68206 -9.40852 -9.34282 -9.02889 -8.98940 -6.21556 0.94690 1.01951 1.53669 1.68402 1.79241 2.40024 2.73759 2.87081 3.51916 3.71369 3.81525 3.84961 3.94861 4.15060 4.26667 4.27753 4.38336 4.44542 4.48605 4.55900 4.62567 4.66244 4.78527 4.85469 4.89186 4.92516 5.00222 5.03930 5.07608 5.12828 5.17354 5.31769 5.38926 5.48323 5.62185 5.84849 5.95501 6.00804 6.09855 6.28211 6.40254 6.45474 6.53426 6.84527 6.98277 7.13936 8.21604 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013043 B = 0.008507 C = 0.006499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.297076 B = 3290.440193 C = 4307.232954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.076 3.924 3 H 0.039 0.961 4 C -0.105 4.105 5 C -0.138 4.138 6 C 0.112 3.888 7 H 0.040 0.960 8 O -0.583 6.583 9 C 0.076 3.924 10 N -0.522 5.522 11 C 0.134 3.866 12 C -0.197 4.197 13 C -0.085 4.085 14 C -0.256 4.256 15 C -0.094 4.094 16 C -0.243 4.243 17 C 0.094 3.906 18 C -0.510 4.510 19 H 0.076 0.924 20 C 0.006 3.994 21 N -0.826 5.826 22 Si 1.107 2.893 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.256 1.256 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.395 0.605 34 H 0.028 0.972 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.023 0.977 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.304 7.460 -9.547 12.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.031 4.031 3 H 0.057 0.943 4 C -0.143 4.143 5 C -0.176 4.176 6 C 0.052 3.948 7 H 0.059 0.941 8 O -0.391 6.391 9 C -0.052 4.052 10 N -0.248 5.248 11 C 0.008 3.992 12 C -0.199 4.199 13 C -0.104 4.104 14 C -0.275 4.275 15 C -0.112 4.112 16 C -0.263 4.263 17 C 0.091 3.909 18 C -0.538 4.538 19 H 0.094 0.906 20 C -0.209 4.209 21 N -0.450 5.450 22 Si 0.926 3.074 23 H -0.196 1.196 24 H -0.204 1.204 25 H -0.180 1.180 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.245 0.755 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.041 0.959 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.124 0.876 41 H 0.098 0.902 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.212 5.927 -9.441 11.149 hybrid contribution 1.583 1.458 0.605 2.236 sum 1.795 7.385 -8.836 11.654 Atomic orbital electron populations 1.21874 0.93832 1.02028 1.02198 1.21754 0.96064 0.95039 0.90292 0.94312 1.21568 0.94557 1.01195 0.96943 1.22212 0.96592 1.01650 0.97140 1.21619 0.80093 0.97982 0.95068 0.94150 1.86417 1.18895 1.80969 1.52791 1.21635 0.88173 0.97760 0.97682 1.61686 1.05113 1.55972 1.02025 1.20536 0.99177 0.92362 0.87123 1.19807 1.01596 0.99834 0.98668 1.20763 0.96643 0.98234 0.94718 1.20620 1.06944 0.97690 1.02281 1.20856 0.96093 0.96317 0.97982 1.21122 1.04604 1.02308 0.98268 1.17714 0.90506 0.91476 0.91202 1.20455 1.17163 0.94720 1.21485 0.90565 1.28080 1.06330 0.93564 0.92945 1.70525 1.03480 1.39435 1.31548 0.83128 0.70318 0.76532 0.77403 1.19625 1.20374 1.18017 0.93047 0.89872 0.93238 0.92383 0.88579 0.89429 0.91065 0.75487 0.95385 0.93247 0.90591 0.95891 0.87593 0.86971 0.87608 0.90216 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 8.55 71.98 0.62 -3.41 16 2 C 0.08 2.28 2.44 44.94 0.11 2.39 16 3 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 4 C -0.10 -2.66 5.37 30.65 0.16 -2.49 16 5 C -0.14 -3.34 5.63 30.67 0.17 -3.17 16 6 C 0.11 3.58 3.63 30.65 0.11 3.69 16 7 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 8 O -0.58 -17.25 13.32 -148.98 -1.98 -19.24 16 9 C 0.08 2.86 4.95 86.33 0.43 3.28 16 10 N -0.52 -19.77 4.38 -875.65 -3.83 -23.61 16 11 C 0.13 5.43 4.15 85.56 0.36 5.78 16 12 C -0.20 -9.29 4.46 -19.41 -0.09 -9.38 16 13 C -0.08 -3.78 8.95 22.22 0.20 -3.58 16 14 C -0.26 -11.43 10.05 22.46 0.23 -11.21 16 15 C -0.09 -4.48 10.02 22.22 0.22 -4.25 16 16 C -0.24 -12.92 8.03 22.73 0.18 -12.73 16 17 C 0.09 4.94 5.19 -21.29 -0.11 4.83 16 18 C -0.51 -26.42 8.23 23.46 0.19 -26.23 16 19 H 0.08 3.85 6.63 -2.91 -0.02 3.83 16 20 C 0.01 0.32 4.89 85.26 0.42 0.73 16 21 N -0.83 -45.59 12.53 21.82 0.27 -45.31 16 22 Si 1.11 43.90 30.00 68.60 2.06 45.95 16 23 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 24 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 26 H 0.05 1.47 6.52 -2.39 -0.02 1.46 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 1.65 8.01 -2.39 -0.02 1.64 16 29 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.40 7.52 9.08 -74.06 -0.67 6.84 16 34 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.05 2.21 6.56 -2.39 -0.02 2.19 16 36 H 0.08 3.09 4.70 -2.39 -0.01 3.08 16 37 H 0.02 0.86 7.93 -2.39 -0.02 0.84 16 38 H 0.11 4.18 7.99 -2.91 -0.02 4.15 16 39 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 40 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 41 H 0.08 4.46 6.87 -2.91 -0.02 4.44 16 42 H 0.28 16.29 6.88 -92.71 -0.64 15.65 16 Total: -1.00 -61.50 328.52 0.18 -61.32 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: 0.46 Total: 36.64 kcal Atomic # 6 Polarization: -58.95 SS G_CDS: 3.20 Total: -55.75 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: -3.56 Total: -68.92 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -1.98 Total: -19.24 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.06 Total: 45.95 kcal Total: -61.50 0.18 -61.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512429.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.148 kcal (2) G-P(sol) polarization free energy of solvation -61.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds