Wall clock time and date at job start Mon Mar 30 2020 20:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.57002 * 2 1 4 4 C 1.53116 * 109.52267 * 239.83807 * 2 1 3 5 5 C 1.53047 * 109.27321 * 182.44208 * 4 2 1 6 6 N 1.46843 * 109.52363 * 59.18342 * 5 4 2 7 7 C 1.46897 * 110.99748 * 174.15884 * 6 5 4 8 8 C 1.50701 * 109.47340 * 65.61524 * 7 6 5 9 9 C 1.37633 * 120.12620 * 265.32667 * 8 7 6 10 10 C 1.38617 * 120.24560 * 179.97438 * 9 8 7 11 11 C 1.38657 * 120.50274 * 359.97288 * 10 9 8 12 12 C 1.37596 * 120.24778 * 0.02633 * 11 10 9 13 13 C 1.40696 * 120.12554 * 85.30093 * 8 7 6 14 14 C 1.41391 * 120.24803 * 0.02562 * 13 8 7 15 15 H 1.08001 * 120.00167 * 32.80479 * 14 13 8 16 16 C 1.39947 * 120.00391 * 212.81036 * 14 13 8 17 17 N 1.30830 * 119.99904 * 6.52119 * 16 14 13 18 18 Si 1.86795 * 120.00501 * 186.52328 * 16 14 13 19 19 H 1.48499 * 109.47051 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47555 * 120.00022 * 18 16 14 21 21 H 1.48504 * 109.47188 * 239.99882 * 18 16 14 22 22 C 1.46855 * 111.19347 * 298.25231 * 6 5 4 23 23 C 1.53034 * 109.52143 * 61.74685 * 22 6 5 24 24 H 1.09004 * 109.53679 * 60.78235 * 23 22 6 25 25 O 1.42896 * 109.50133 * 180.87660 * 23 22 6 26 26 H 1.08996 * 109.47263 * 180.15919 * 1 2 3 27 27 H 1.08996 * 109.47555 * 300.16384 * 1 2 3 28 28 H 1.09011 * 109.46632 * 60.16330 * 1 2 3 29 29 H 1.09000 * 109.50792 * 62.50730 * 4 2 1 30 30 H 1.08995 * 109.53816 * 302.39821 * 4 2 1 31 31 H 1.08994 * 109.46328 * 299.16029 * 5 4 2 32 32 H 1.09003 * 109.45949 * 179.19629 * 5 4 2 33 33 H 1.08998 * 109.46956 * 305.61042 * 7 6 5 34 34 H 1.09005 * 109.46625 * 185.61046 * 7 6 5 35 35 H 1.08001 * 119.87908 * 359.95053 * 9 8 7 36 36 H 1.08007 * 119.74524 * 179.97438 * 10 9 8 37 37 H 1.07997 * 119.87436 * 179.75199 * 11 10 9 38 38 H 1.07997 * 120.12733 * 179.97438 * 12 11 10 39 39 H 0.96998 * 120.00411 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.45790 * 181.76031 * 22 6 5 41 41 H 1.08995 * 109.46052 * 301.72764 * 22 6 5 42 42 H 0.96700 * 114.00255 * 299.79946 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0417 -0.7251 -1.2477 5 6 3.5709 -0.7752 -1.2114 6 7 4.0102 -1.4789 0.0002 7 6 5.4670 -1.6678 0.0002 8 6 6.1475 -0.3260 0.0873 9 6 6.5554 0.3174 -1.0590 10 6 7.1811 1.5519 -0.9819 11 6 7.4029 2.1529 0.2478 12 6 7.0036 1.5279 1.4068 13 6 6.3679 0.2741 1.3406 14 6 5.9532 -0.3775 2.5250 15 1 5.9682 -1.4559 2.5817 16 6 5.5232 0.3750 3.6238 17 7 5.3830 1.6711 3.5145 18 14 5.1494 -0.4712 5.2466 19 1 5.3848 -1.9310 5.1095 20 1 6.0348 0.0760 6.3058 21 1 3.7309 -0.2314 5.6147 22 6 3.5707 -0.7750 1.2118 23 6 2.0416 -0.7249 1.2479 24 1 1.6441 -1.7397 1.2680 25 8 1.6148 -0.0222 2.4166 26 1 -0.3633 -1.0276 0.0029 27 1 -0.3634 0.5163 0.8884 28 1 -0.3633 0.5114 -0.8916 29 1 1.7163 -0.1891 -2.1393 30 1 1.6448 -1.7400 -1.2680 31 1 3.9675 0.2400 -1.2058 32 1 3.9379 -1.3034 -2.0915 33 1 5.7684 -2.1691 -0.9195 34 1 5.7543 -2.2771 0.8572 35 1 6.3877 -0.1415 -2.0222 36 1 7.4982 2.0494 -1.8866 37 1 7.8949 3.1130 0.2964 38 1 7.1777 1.9976 2.3636 39 1 5.0846 2.1927 4.2760 40 1 3.9377 -1.3032 2.0919 41 1 3.9674 0.2402 1.2060 42 1 1.9039 -0.4263 3.2461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235512978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:08:37 Heat of formation + Delta-G solvation = -55.644914 kcal Electronic energy + Delta-G solvation = -22881.499818 eV Core-core repulsion = 19824.613105 eV Total energy + Delta-G solvation = -3056.886713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.85242 -39.16214 -36.98486 -35.52043 -35.09904 -31.95901 -31.41321 -30.47721 -28.97644 -27.11504 -25.55696 -23.89479 -22.78057 -22.64111 -21.35611 -20.39321 -18.94119 -18.17196 -17.33332 -16.60072 -16.32893 -16.09205 -15.66954 -15.55790 -15.19471 -14.99408 -14.38367 -14.36666 -13.99274 -13.58075 -13.43314 -13.30171 -13.12204 -12.97639 -12.77565 -12.70533 -12.58919 -12.41628 -12.16747 -11.98619 -11.74983 -11.49078 -11.34098 -11.21448 -11.06755 -10.95845 -10.64366 -9.27874 -9.14806 -9.00773 -8.49123 -6.24511 0.98201 1.11123 1.40341 1.49443 1.52042 2.23255 2.84992 3.11110 3.49651 3.77025 3.90031 3.93349 4.17656 4.29237 4.42537 4.46551 4.49833 4.57273 4.61995 4.67972 4.72698 4.82953 4.88520 4.97760 5.02406 5.04157 5.09318 5.16365 5.30209 5.32290 5.34732 5.39800 5.43280 5.52281 5.58185 5.78520 6.00968 6.13801 6.18243 6.26504 6.35754 6.47007 6.74664 6.84248 7.03418 7.09688 8.46995 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.010148 C = 0.006789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.967196 B = 2758.447112 C = 4123.278539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 H 0.038 0.962 4 C -0.098 4.098 5 C 0.050 3.950 6 N -0.517 5.517 7 C 0.121 3.879 8 C -0.226 4.226 9 C -0.090 4.090 10 C -0.239 4.239 11 C -0.121 4.121 12 C -0.184 4.184 13 C 0.097 3.903 14 C -0.471 4.471 15 H 0.076 0.924 16 C 0.043 3.957 17 N -0.833 5.833 18 Si 0.958 3.042 19 H -0.256 1.256 20 H -0.277 1.277 21 H -0.259 1.259 22 C 0.048 3.952 23 C 0.110 3.890 24 H 0.067 0.933 25 O -0.579 6.579 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.011 0.989 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.280 0.720 40 H 0.071 0.929 41 H 0.022 0.978 42 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.733 -5.739 -4.816 10.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.105 4.105 3 H 0.056 0.944 4 C -0.135 4.135 5 C -0.079 4.079 6 N -0.241 5.241 7 C -0.006 4.006 8 C -0.229 4.229 9 C -0.109 4.109 10 C -0.258 4.258 11 C -0.140 4.140 12 C -0.203 4.203 13 C 0.095 3.905 14 C -0.501 4.501 15 H 0.093 0.907 16 C -0.171 4.171 17 N -0.460 5.460 18 Si 0.780 3.220 19 H -0.179 1.179 20 H -0.203 1.203 21 H -0.184 1.184 22 C -0.081 4.081 23 C 0.051 3.949 24 H 0.085 0.915 25 O -0.385 6.385 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.029 0.971 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.040 0.960 42 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -7.333 -5.629 -5.123 10.569 hybrid contribution 1.038 0.926 1.522 2.062 sum -6.295 -4.702 -3.601 8.644 Atomic orbital electron populations 1.21663 0.93150 1.02358 1.01647 1.21149 0.97289 0.98239 0.93831 0.94360 1.21581 0.93807 1.01554 0.96578 1.22147 0.96128 0.96308 0.93270 1.62470 1.11699 1.48005 1.01929 1.20760 0.85769 0.92731 1.01316 1.20729 1.08301 1.01016 0.92853 1.20749 0.98078 0.95122 0.96975 1.20753 1.10112 0.98476 0.96443 1.20964 1.00579 0.98797 0.93629 1.21361 1.03221 0.99013 0.96752 1.17755 0.88211 0.91763 0.92781 1.19508 1.39542 0.94126 0.96967 0.90651 1.26435 0.93271 0.94928 1.02441 1.69862 1.35866 1.07820 1.32484 0.85509 0.79133 0.79696 0.77691 1.17934 1.20291 1.18360 1.22763 0.94435 0.97528 0.93356 1.21968 0.92808 0.94753 0.85393 0.91526 1.86430 1.78307 1.56999 1.16743 0.91520 0.93566 0.91513 0.89513 0.89740 0.97105 0.89619 0.90238 0.91724 0.86819 0.87061 0.88163 0.88684 0.90998 0.91053 0.95982 0.77011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 9.07 71.98 0.65 -2.71 16 2 C -0.09 -2.74 2.51 -10.72 -0.03 -2.77 16 3 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 4 C -0.10 -2.64 5.38 30.65 0.16 -2.48 16 5 C 0.05 1.62 4.90 86.33 0.42 2.04 16 6 N -0.52 -18.78 4.86 -900.91 -4.38 -23.16 16 7 C 0.12 4.67 5.33 85.56 0.46 5.13 16 8 C -0.23 -10.16 4.10 -19.41 -0.08 -10.24 16 9 C -0.09 -3.82 8.45 22.22 0.19 -3.63 16 10 C -0.24 -10.37 10.05 22.46 0.23 -10.14 16 11 C -0.12 -5.75 10.02 22.22 0.22 -5.53 16 12 C -0.18 -9.70 8.63 22.73 0.20 -9.50 16 13 C 0.10 4.97 4.43 -21.29 -0.09 4.88 16 14 C -0.47 -23.35 4.93 23.46 0.12 -23.24 16 15 H 0.08 3.65 6.21 -2.91 -0.02 3.64 16 16 C 0.04 2.05 5.25 85.26 0.45 2.50 16 17 N -0.83 -43.11 10.91 21.83 0.24 -42.88 16 18 Si 0.96 36.92 29.56 68.60 2.03 38.95 16 19 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 20 H -0.28 -10.78 7.11 99.48 0.71 -10.08 16 21 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 22 C 0.05 1.93 3.36 86.32 0.29 2.22 16 23 C 0.11 3.81 3.04 30.64 0.09 3.90 16 24 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 25 O -0.58 -21.15 12.77 -148.98 -1.90 -23.05 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.30 7.77 -2.39 -0.02 1.28 16 28 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.01 0.42 6.76 -2.39 -0.02 0.40 16 32 H 0.09 2.42 8.07 -2.39 -0.02 2.40 16 33 H 0.08 2.66 7.98 -2.39 -0.02 2.65 16 34 H 0.06 2.60 6.54 -2.38 -0.02 2.58 16 35 H 0.11 4.09 8.06 -2.91 -0.02 4.06 16 36 H 0.11 4.18 8.06 -2.91 -0.02 4.15 16 37 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 38 H 0.10 5.33 6.39 -2.91 -0.02 5.31 16 39 H 0.28 13.51 8.30 -92.71 -0.77 12.74 16 40 H 0.07 3.04 6.14 -2.39 -0.01 3.03 16 41 H 0.02 1.11 6.01 -2.39 -0.01 1.10 16 42 H 0.38 11.97 9.08 -74.06 -0.67 11.29 16 Total: -1.00 -57.58 321.15 -0.40 -57.98 By element: Atomic # 1 Polarization: 41.39 SS G_CDS: 0.34 Total: 41.73 kcal Atomic # 6 Polarization: -52.84 SS G_CDS: 3.27 Total: -49.57 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -4.14 Total: -66.04 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -1.90 Total: -23.05 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Total: -57.58 -0.40 -57.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.333 kcal (2) G-P(sol) polarization free energy of solvation -57.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds