Wall clock time and date at job start Mon Mar 30 2020 20:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00306 * 2 1 4 4 C 1.38752 * 120.05204 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94680 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.05036 * 359.72376 * 5 4 3 7 7 C 1.38244 * 120.11199 * 0.55704 * 6 5 4 8 8 C 1.38171 * 120.05436 * 359.44067 * 7 6 5 9 9 C 1.50699 * 120.02521 * 180.30143 * 8 7 6 10 10 C 1.53003 * 109.47230 * 265.00014 * 9 8 7 11 11 H 1.09000 * 109.47187 * 305.00748 * 10 9 8 12 12 C 1.52996 * 109.47301 * 185.00410 * 10 9 8 13 13 N 1.46897 * 109.46798 * 65.00388 * 10 9 8 14 14 C 1.47484 * 111.00042 * 275.97061 * 13 10 9 15 15 C 1.53514 * 87.93341 * 221.29659 * 14 13 10 16 16 C 1.50699 * 114.16871 * 139.66619 * 15 14 13 17 17 H 1.08000 * 120.00439 * 266.15848 * 16 15 14 18 18 C 1.37879 * 119.99633 * 86.16315 * 16 15 14 19 19 N 1.31517 * 120.00341 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00124 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47066 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47140 * 119.99759 * 20 18 16 23 23 H 1.48491 * 109.47499 * 240.00121 * 20 18 16 24 24 C 1.47484 * 110.99792 * 180.02562 * 13 10 9 25 25 H 1.08996 * 109.47358 * 60.00240 * 1 2 3 26 26 H 1.09000 * 109.47471 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47042 * 299.99603 * 1 2 3 28 28 H 1.08007 * 120.02913 * 359.97438 * 4 3 2 29 29 H 1.07994 * 119.97734 * 179.97438 * 5 4 3 30 30 H 1.08001 * 119.94303 * 180.29349 * 6 5 4 31 31 H 1.08002 * 119.97539 * 179.72689 * 7 6 5 32 32 H 1.08997 * 109.47496 * 25.00539 * 9 8 7 33 33 H 1.09000 * 109.46874 * 145.00502 * 9 8 7 34 34 H 1.09001 * 109.47456 * 180.02562 * 12 10 9 35 35 H 1.09000 * 109.46759 * 300.00188 * 12 10 9 36 36 H 1.08996 * 109.47188 * 59.99730 * 12 10 9 37 37 H 1.09000 * 113.47579 * 336.06492 * 14 13 10 38 38 H 1.09005 * 113.47559 * 106.53132 * 14 13 10 39 39 H 1.08997 * 114.34359 * 272.36572 * 15 14 13 40 40 H 0.96993 * 120.00554 * 180.02562 * 19 18 16 41 41 H 1.09001 * 113.47131 * 253.46502 * 24 13 10 42 42 H 1.08996 * 113.47848 * 23.87482 * 24 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6757 0.0047 7 6 4.0560 2.5171 -0.0006 8 6 3.4311 1.2848 0.0000 9 6 4.2537 0.0221 0.0010 10 6 4.4273 -0.4748 -1.4356 11 1 3.4482 -0.5942 -1.8995 12 6 5.1545 -1.8208 -1.4254 13 7 5.2152 0.5017 -2.1995 14 6 4.3568 1.5818 -2.7206 15 6 5.1504 1.5041 -4.0324 16 6 4.3053 1.6335 -5.2734 17 1 3.9360 0.7484 -5.7700 18 6 4.0036 2.8820 -5.7748 19 7 4.4537 3.9598 -5.1705 20 14 2.9566 3.0425 -7.3135 21 1 2.5793 1.6906 -7.7988 22 1 1.7283 3.8152 -6.9981 23 1 3.7292 3.7491 -8.3665 24 6 5.4028 0.0555 -3.5927 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2128 2.3203 -0.0014 29 1 1.3340 4.5113 -0.0019 30 1 3.7922 4.6380 0.0091 31 1 5.1344 2.5751 -0.0005 32 1 5.2323 0.2263 0.4356 33 1 3.7465 -0.7415 0.5907 34 1 5.2786 -2.1746 -2.4489 35 1 6.1336 -1.7013 -0.9615 36 1 4.5699 -2.5453 -0.8585 37 1 3.3114 1.2923 -2.8277 38 1 4.4810 2.5278 -2.1934 39 1 6.0449 2.1266 -4.0539 40 1 4.2412 4.8381 -5.5230 41 1 6.4137 -0.2925 -3.8047 42 1 4.6370 -0.6420 -3.9321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258886444.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:18 Heat of formation + Delta-G solvation = 18.087975 kcal Electronic energy + Delta-G solvation = -22221.462337 eV Core-core repulsion = 19167.772922 eV Total energy + Delta-G solvation = -3053.689415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.21307 -38.88933 -37.06255 -34.28078 -32.30856 -30.92560 -29.78884 -27.35139 -27.20564 -26.11804 -24.38590 -23.74026 -21.82354 -21.38544 -19.73088 -18.53038 -17.72602 -16.47924 -15.98465 -15.56959 -15.46492 -15.02595 -14.49715 -14.20713 -13.98384 -13.61162 -13.43955 -13.34017 -12.50479 -12.35537 -12.10610 -11.91079 -11.72594 -11.53200 -11.31618 -11.13869 -11.08294 -10.93354 -10.92918 -10.74092 -10.47375 -10.37339 -10.03560 -9.64190 -9.03581 -8.87100 -8.45480 -8.23611 -7.81016 -7.75283 -5.99299 -4.02250 1.68992 1.80046 3.29800 3.37888 3.41731 3.47233 4.10873 4.44444 4.97683 4.98604 5.10095 5.16380 5.21661 5.30003 5.36712 5.46041 5.49661 5.57440 5.69949 5.81129 5.86576 5.98272 6.01258 6.14136 6.20170 6.26029 6.32980 6.38630 6.53528 6.60011 6.65978 6.74403 6.78928 6.82091 6.90627 6.99151 7.13384 7.31836 7.35887 7.65132 7.80595 7.99890 8.24864 8.46538 9.00058 9.61501 11.10280 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014554 B = 0.006736 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.349525 B = 4155.943066 C = 4833.029369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.123 3.877 4 C -0.212 4.212 5 C -0.086 4.086 6 C -0.152 4.152 7 C -0.056 4.056 8 C -0.103 4.103 9 C -0.056 4.056 10 C 0.052 3.948 11 H 0.044 0.956 12 C -0.142 4.142 13 N -0.478 5.478 14 C 0.016 3.984 15 C 0.036 3.964 16 C -0.513 4.513 17 H 0.055 0.945 18 C 0.067 3.933 19 N -0.885 5.885 20 Si 0.886 3.114 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.283 1.283 24 C -0.003 4.003 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.050 0.950 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.259 0.741 41 H 0.058 0.942 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.308 -5.340 12.373 14.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.078 3.922 4 C -0.231 4.231 5 C -0.104 4.104 6 C -0.171 4.171 7 C -0.074 4.074 8 C -0.104 4.104 9 C -0.093 4.093 10 C -0.057 4.057 11 H 0.062 0.938 12 C -0.200 4.200 13 N -0.202 5.202 14 C -0.113 4.113 15 C 0.017 3.983 16 C -0.551 4.551 17 H 0.074 0.926 18 C -0.135 4.135 19 N -0.522 5.522 20 Si 0.714 3.286 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.209 1.209 24 C -0.132 4.132 25 H 0.072 0.928 26 H 0.113 0.887 27 H 0.069 0.931 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.666 -5.225 12.830 14.618 hybrid contribution -1.820 0.152 -1.383 2.291 sum -6.486 -5.073 11.447 14.101 Atomic orbital electron populations 1.22979 0.79159 1.03402 1.01097 1.86052 1.20674 1.27185 1.88957 1.18803 0.91847 0.83900 0.97629 1.21081 0.99435 0.92566 1.09990 1.20823 0.94773 0.96624 0.98162 1.21018 0.93831 0.98478 1.03741 1.20881 1.00081 0.90871 0.95575 1.19171 0.90114 0.96167 1.04965 1.20386 0.98600 0.93743 0.96603 1.22118 0.96106 0.92983 0.94497 0.93790 1.21810 1.00505 0.95980 1.01673 1.68908 1.33552 1.07272 1.10425 1.24049 0.95192 0.94128 0.97908 1.20138 0.96125 0.89773 0.92240 1.21077 1.31697 0.92133 1.10187 0.92641 1.24985 0.95785 0.96007 0.96739 1.69975 1.44918 0.97600 1.39740 0.86632 0.80315 0.78118 0.83517 1.19794 1.21094 1.20921 1.23911 0.99256 1.00724 0.89283 0.92771 0.88680 0.93103 0.86168 0.86401 0.86142 0.85251 0.90859 0.91315 0.92671 0.92345 0.93064 0.93638 0.91325 0.92028 0.93087 0.92387 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.81 9.63 -19.42 -0.19 -5.00 16 3 C 0.12 2.03 6.66 -39.22 -0.26 1.77 16 4 C -0.21 -3.24 9.04 -39.43 -0.36 -3.60 16 5 C -0.09 -1.31 10.04 -39.60 -0.40 -1.70 16 6 C -0.15 -2.44 10.00 -39.56 -0.40 -2.84 16 7 C -0.06 -0.94 6.68 -39.60 -0.26 -1.21 16 8 C -0.10 -1.76 3.88 -104.47 -0.41 -2.16 16 9 C -0.06 -0.89 4.75 -27.88 -0.13 -1.03 16 10 C 0.05 0.93 1.98 -67.72 -0.13 0.80 16 11 H 0.04 0.88 7.52 -51.93 -0.39 0.49 16 12 C -0.14 -2.15 9.09 37.16 0.34 -1.82 16 13 N -0.48 -9.83 6.10 -236.74 -1.44 -11.27 16 14 C 0.02 0.37 5.12 -7.60 -0.04 0.34 16 15 C 0.04 0.93 3.77 -91.26 -0.34 0.59 16 16 C -0.51 -14.34 8.82 -34.44 -0.30 -14.64 16 17 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 18 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 19 N -0.88 -25.83 13.26 55.43 0.74 -25.09 16 20 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.00 -0.06 6.01 -7.61 -0.05 -0.11 16 25 H 0.05 0.59 7.66 -51.93 -0.40 0.20 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 28 H 0.12 1.54 6.30 -52.48 -0.33 1.21 16 29 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.07 1.12 8.05 -51.93 -0.42 0.71 16 33 H 0.07 1.02 7.69 -51.93 -0.40 0.63 16 34 H 0.05 0.85 7.03 -51.93 -0.37 0.49 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.05 1.15 7.49 -51.93 -0.39 0.76 16 38 H 0.07 1.67 5.82 -51.93 -0.30 1.36 16 39 H 0.06 1.73 8.11 -51.93 -0.42 1.31 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 1.10 7.61 -51.93 -0.40 0.70 16 LS Contribution 334.75 15.07 5.04 5.04 Total: -1.00 -30.05 334.75 -9.43 -39.48 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.71 Total: 2.86 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -1.85 Total: -22.50 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.71 Total: -36.36 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.19 Total: -5.00 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.05 -9.43 -39.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258886444.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.570 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds