Wall clock time and date at job start Mon Mar 30 2020 20:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.47122 * 2 1 4 4 C 1.52996 * 109.46941 * 240.00228 * 2 1 3 5 5 C 1.53006 * 109.47201 * 174.99936 * 4 2 1 6 6 C 1.52998 * 109.47285 * 179.97438 * 5 4 2 7 7 C 1.52994 * 117.50286 * 243.62558 * 6 5 4 8 8 C 1.53000 * 117.50202 * 174.99740 * 6 5 4 9 9 N 1.46499 * 109.47157 * 120.00165 * 2 1 3 10 10 C 1.39785 * 120.00077 * 274.99556 * 9 2 1 11 11 C 1.38947 * 120.00842 * 180.02562 * 10 9 2 12 12 C 1.38004 * 119.99361 * 179.97438 * 11 10 9 13 13 C 1.38899 * 120.00693 * 359.97438 * 12 11 10 14 14 O 1.35804 * 119.99027 * 179.97438 * 13 12 11 15 15 C 1.34807 * 117.00318 * 354.46051 * 14 13 12 16 16 H 1.08001 * 120.00088 * 5.06168 * 15 14 13 17 17 C 1.38620 * 120.00146 * 185.05406 * 15 14 13 18 18 N 1.31576 * 119.99834 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00011 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47090 * 90.00209 * 19 17 15 21 21 H 1.48500 * 109.46773 * 210.00367 * 19 17 15 22 22 H 1.48495 * 109.46944 * 329.99917 * 19 17 15 23 23 C 1.38897 * 120.01195 * 0.25905 * 13 12 11 24 24 C 1.38008 * 120.00438 * 359.49161 * 23 13 12 25 25 H 1.08996 * 109.47196 * 59.99611 * 1 2 3 26 26 H 1.08990 * 109.47049 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46538 * 300.00042 * 1 2 3 28 28 H 1.09001 * 109.47121 * 294.99786 * 4 2 1 29 29 H 1.08994 * 109.47566 * 55.00249 * 4 2 1 30 30 H 1.09001 * 109.46960 * 299.99949 * 5 4 2 31 31 H 1.09003 * 109.46587 * 60.00016 * 5 4 2 32 32 H 1.09006 * 115.54735 * 29.33326 * 6 5 4 33 33 H 1.09004 * 117.49780 * 359.97438 * 7 6 5 34 34 H 1.09000 * 117.50421 * 145.01873 * 7 6 5 35 35 H 1.08993 * 117.50099 * 214.98371 * 8 6 5 36 36 H 1.09002 * 117.49221 * 0.02562 * 8 6 5 37 37 H 0.96995 * 119.99947 * 95.00077 * 9 2 1 38 38 H 1.07998 * 119.99899 * 359.95223 * 11 10 9 39 39 H 1.08003 * 119.99876 * 179.97438 * 12 11 10 40 40 H 0.97001 * 120.00486 * 179.97438 * 18 17 15 41 41 H 1.07999 * 119.99214 * 179.71953 * 23 13 12 42 42 H 1.08001 * 119.99973 * 180.25460 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3138 6 6 4.0749 -1.3350 -2.5627 7 6 4.9765 -2.5536 -2.3558 8 6 5.5704 -1.2413 -2.8716 9 7 2.0184 -0.6906 1.1961 10 6 2.1520 0.0067 2.4002 11 6 2.6156 -0.6481 3.5347 12 6 2.7479 0.0408 4.7232 13 6 2.4181 1.3886 4.7853 14 8 2.5479 2.0660 5.9551 15 6 2.8912 1.3481 7.0433 16 1 3.1294 0.2993 6.9452 17 6 2.9386 1.9561 8.2881 18 7 2.6480 3.2338 8.4077 19 14 3.4149 0.9615 9.7959 20 1 4.8865 1.0236 9.9852 21 1 2.7377 1.5219 10.9927 22 1 2.9991 -0.4517 9.6082 23 6 1.9500 2.0422 3.6526 24 6 1.8224 1.3551 2.4626 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8901 28 1 1.7516 -1.7715 -1.2056 29 1 1.6054 -0.2617 -2.1370 30 1 3.8532 0.4370 -1.3574 31 1 3.9994 -1.0728 -0.4260 32 1 3.3867 -1.3554 -3.4078 33 1 5.2067 -2.8409 -1.3298 34 1 4.8817 -3.3761 -3.0647 35 1 5.8662 -1.2004 -3.9199 36 1 6.1910 -0.6657 -2.1848 37 1 2.2491 -1.6317 1.1525 38 1 2.8721 -1.6961 3.4864 39 1 3.1079 -0.4682 5.6051 40 1 2.6807 3.6593 9.2788 41 1 1.6894 3.0891 3.7024 42 1 1.4623 1.8644 1.5809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338114057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:36 Heat of formation + Delta-G solvation = -6.376575 kcal Electronic energy + Delta-G solvation = -20405.861615 eV Core-core repulsion = 17351.111337 eV Total energy + Delta-G solvation = -3054.750278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.75911 -39.33979 -38.37770 -36.76938 -34.23733 -32.97808 -31.80994 -30.51646 -28.53978 -27.03316 -25.08885 -23.90852 -23.21111 -22.58192 -21.36917 -21.20748 -19.58264 -18.88903 -17.85768 -16.86886 -16.49249 -16.21645 -15.70896 -15.52700 -15.36790 -15.22915 -14.60600 -14.42758 -14.37483 -14.04373 -13.95290 -13.47673 -13.27438 -13.10160 -12.72921 -12.63071 -12.50630 -12.38763 -12.28615 -12.13321 -12.09255 -11.85520 -11.59728 -11.08694 -11.02433 -10.85864 -10.70742 -10.14362 -9.75478 -8.38721 -7.88532 -6.02105 0.60544 0.96359 1.36546 1.46597 1.54095 2.23104 2.71865 2.92745 2.93794 3.27145 3.64750 3.69256 4.02885 4.04219 4.11659 4.17146 4.18517 4.29904 4.39722 4.50737 4.58808 4.67762 4.70241 4.80255 4.85379 4.90546 4.94943 5.02613 5.07554 5.08913 5.16371 5.21349 5.27097 5.29562 5.34571 5.44503 5.53167 5.54483 5.58772 5.80718 6.02534 6.12647 6.68750 7.06573 7.11485 7.94943 8.86064 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026595 B = 0.003170 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.596412 B = 8829.807647 C = 9350.888203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.149 3.851 3 H 0.068 0.932 4 C -0.110 4.110 5 C -0.087 4.087 6 C -0.151 4.151 7 C -0.184 4.184 8 C -0.191 4.191 9 N -0.738 5.738 10 C 0.159 3.841 11 C -0.149 4.149 12 C -0.193 4.193 13 C 0.060 3.940 14 O -0.244 6.244 15 C -0.405 4.405 16 H 0.097 0.903 17 C -0.029 4.029 18 N -0.928 5.928 19 Si 1.017 2.983 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.254 1.254 23 C -0.156 4.156 24 C -0.146 4.146 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.400 0.600 38 H 0.137 0.863 39 H 0.117 0.883 40 H 0.269 0.731 41 H 0.111 0.889 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.168 -11.912 -22.515 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.044 3.956 3 H 0.086 0.914 4 C -0.147 4.147 5 C -0.124 4.124 6 C -0.169 4.169 7 C -0.221 4.221 8 C -0.228 4.228 9 N -0.372 5.372 10 C 0.058 3.942 11 C -0.171 4.171 12 C -0.213 4.213 13 C 0.011 3.989 14 O -0.152 6.152 15 C -0.482 4.482 16 H 0.115 0.885 17 C -0.225 4.225 18 N -0.568 5.568 19 Si 0.836 3.164 20 H -0.189 1.189 21 H -0.197 1.197 22 H -0.178 1.178 23 C -0.176 4.176 24 C -0.168 4.168 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.132 0.868 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.236 0.764 38 H 0.155 0.845 39 H 0.135 0.865 40 H 0.078 0.922 41 H 0.129 0.871 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.057 -11.403 -22.468 25.196 hybrid contribution 0.359 -0.290 1.132 1.222 sum 0.416 -11.693 -21.336 24.334 Atomic orbital electron populations 1.22270 0.95930 1.02329 1.01943 1.20948 0.93442 0.96718 0.84524 0.91387 1.21757 0.94826 1.01428 0.96726 1.21133 0.95827 0.99757 0.95722 1.22399 0.93102 1.01259 1.00130 1.23082 1.04579 0.92010 1.02400 1.23022 0.96314 1.01185 1.02262 1.44454 1.74902 1.11911 1.05919 1.17507 0.98342 0.91308 0.87073 1.20485 1.05470 1.00036 0.91118 1.21043 1.06898 0.94068 0.99272 1.19722 0.99051 0.92316 0.87857 1.83932 1.80246 1.36489 1.14531 1.21747 1.46745 0.95091 0.84619 0.88521 1.26527 0.97155 0.97474 1.01357 1.70204 1.48847 1.12113 1.25623 0.84614 0.78682 0.77862 0.75211 1.18926 1.19738 1.17753 1.20241 1.05624 1.00056 0.91661 1.20449 1.06304 0.93307 0.96776 0.90379 0.92231 0.94140 0.90724 0.89117 0.92451 0.92635 0.86822 0.89360 0.88059 0.88044 0.89619 0.76415 0.84502 0.86516 0.92166 0.87105 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.43 71.98 0.68 -2.21 16 2 C 0.15 2.68 2.27 44.99 0.10 2.78 16 3 H 0.07 1.36 6.48 -2.38 -0.02 1.35 16 4 C -0.11 -1.43 4.71 30.60 0.14 -1.28 16 5 C -0.09 -1.34 5.38 30.60 0.16 -1.17 16 6 C -0.15 -2.03 5.74 -10.80 -0.06 -2.09 16 7 C -0.18 -2.50 10.18 30.59 0.31 -2.19 16 8 C -0.19 -2.69 10.25 30.60 0.31 -2.38 16 9 N -0.74 -16.61 4.70 -318.79 -1.50 -18.11 16 10 C 0.16 5.06 6.64 38.21 0.25 5.32 16 11 C -0.15 -5.28 9.89 22.38 0.22 -5.05 16 12 C -0.19 -8.71 9.16 22.37 0.20 -8.51 16 13 C 0.06 3.11 6.65 22.59 0.15 3.26 16 14 O -0.24 -15.28 9.76 -23.11 -0.23 -15.50 16 15 C -0.41 -24.50 9.48 67.91 0.64 -23.86 16 16 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 17 C -0.03 -1.72 5.49 84.82 0.47 -1.25 16 18 N -0.93 -59.01 13.67 21.61 0.30 -58.71 16 19 Si 1.02 44.44 29.55 68.60 2.03 46.47 16 20 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 23 C -0.16 -6.93 9.98 22.37 0.22 -6.70 16 24 C -0.15 -5.11 8.84 22.39 0.20 -4.91 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.04 0.89 7.71 -2.38 -0.02 0.87 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 1.01 7.48 -2.39 -0.02 0.99 16 32 H 0.11 1.27 8.08 -2.38 -0.02 1.25 16 33 H 0.09 1.30 8.03 -2.39 -0.02 1.28 16 34 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.40 7.69 8.61 -92.71 -0.80 6.89 16 38 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 39 H 0.12 5.37 5.63 -2.91 -0.02 5.35 16 40 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 41 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 42 H 0.14 4.05 6.11 -2.91 -0.02 4.04 16 Total: -1.00 -72.11 345.99 4.82 -67.29 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.21 Total: 28.84 kcal Atomic # 6 Polarization: -54.27 SS G_CDS: 4.01 Total: -50.26 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -1.20 Total: -76.83 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.23 Total: -15.50 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -72.11 4.82 -67.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338114057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.909 kcal (2) G-P(sol) polarization free energy of solvation -72.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds