Wall clock time and date at job start Mon Mar 30 2020 20:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47153 * 2 1 4 4 C 1.52997 * 109.47009 * 120.00077 * 2 1 3 5 5 C 1.52996 * 109.47299 * 184.99945 * 4 2 1 6 6 C 1.53004 * 109.47514 * 179.97438 * 5 4 2 7 7 C 1.53002 * 117.51639 * 116.28163 * 6 5 4 8 8 C 1.52998 * 117.49907 * 184.91118 * 6 5 4 9 9 N 1.46500 * 109.47024 * 239.99487 * 2 1 3 10 10 C 1.39788 * 119.99599 * 85.00473 * 9 2 1 11 11 C 1.38948 * 120.00781 * 359.72420 * 10 9 2 12 12 C 1.38012 * 119.99480 * 179.71941 * 11 10 9 13 13 C 1.38897 * 120.00316 * 0.55799 * 12 11 10 14 14 O 1.35798 * 119.99395 * 179.69863 * 13 12 11 15 15 C 1.34805 * 117.00380 * 174.48057 * 14 13 12 16 16 H 1.08002 * 120.00023 * 5.05317 * 15 14 13 17 17 C 1.38617 * 120.00328 * 185.05981 * 15 14 13 18 18 N 1.31582 * 120.00130 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00249 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47327 * 59.99656 * 19 17 15 21 21 H 1.48498 * 109.47432 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46939 * 299.99763 * 19 17 15 23 23 C 1.38898 * 120.01453 * 359.71920 * 13 12 11 24 24 C 1.38003 * 120.00304 * 0.02562 * 23 13 12 25 25 H 1.08995 * 109.47012 * 300.00406 * 1 2 3 26 26 H 1.09003 * 109.46934 * 59.99707 * 1 2 3 27 27 H 1.08997 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47217 * 64.99767 * 4 2 1 29 29 H 1.09002 * 109.47124 * 304.99912 * 4 2 1 30 30 H 1.09000 * 109.47131 * 59.99770 * 5 4 2 31 31 H 1.09002 * 109.47005 * 300.00039 * 5 4 2 32 32 H 1.09000 * 115.54761 * 330.58724 * 6 5 4 33 33 H 1.09002 * 117.49563 * 214.97471 * 7 6 5 34 34 H 1.08994 * 117.50119 * 359.97438 * 7 6 5 35 35 H 1.08996 * 117.50380 * 359.97438 * 8 6 5 36 36 H 1.08999 * 117.49538 * 145.00341 * 8 6 5 37 37 H 0.96995 * 120.00597 * 265.00315 * 9 2 1 38 38 H 1.08000 * 120.00050 * 0.02562 * 11 10 9 39 39 H 1.08005 * 119.99578 * 180.25124 * 12 11 10 40 40 H 0.96998 * 120.00692 * 180.02562 * 18 17 15 41 41 H 1.08000 * 119.99528 * 179.97438 * 23 13 12 42 42 H 1.08003 * 120.00370 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0748 -1.3341 2.5633 7 6 4.9747 -2.5543 2.3578 8 6 5.5706 -1.2419 2.8710 9 7 2.0183 -0.6907 -1.1961 10 6 2.1519 0.0066 -2.4002 11 6 1.8161 1.3534 -2.4642 12 6 1.9536 2.0431 -3.6518 13 6 2.4165 1.3881 -4.7858 14 8 2.5459 2.0654 -5.9556 15 6 3.1070 1.4035 -6.9873 16 1 3.3554 0.3573 -6.8865 17 6 3.3654 2.0657 -8.1773 18 7 3.0624 3.3403 -8.3003 19 14 4.1436 1.1487 -9.6066 20 1 3.2658 0.0199 -10.0074 21 1 4.3138 2.0746 -10.7550 22 1 5.4694 0.6223 -9.1939 23 6 2.7468 0.0404 -4.7235 24 6 2.6145 -0.6484 -3.5350 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.7516 -1.7715 1.2056 29 1 1.6054 -0.2617 2.1369 30 1 3.8532 0.4369 1.3574 31 1 3.9994 -1.0729 0.4260 32 1 3.3872 -1.3525 3.4089 33 1 4.8791 -3.3755 3.0682 34 1 5.2032 -2.8441 1.3322 35 1 6.1916 -0.6682 2.1830 36 1 5.8672 -1.1997 3.9190 37 1 2.2490 -1.6318 -1.1526 38 1 1.4523 1.8617 -1.5835 39 1 1.6964 3.0909 -3.7005 40 1 3.2428 3.8036 -9.1331 41 1 3.1063 -0.4687 -5.6056 42 1 2.8709 -1.6964 -3.4867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338114058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:39 Heat of formation + Delta-G solvation = 10.863121 kcal Electronic energy + Delta-G solvation = -20410.307692 eV Core-core repulsion = 17356.304983 eV Total energy + Delta-G solvation = -3054.002708 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.17057 -38.21087 -37.20504 -35.46535 -32.35821 -31.61192 -30.30333 -29.50198 -26.97251 -25.10171 -24.25184 -22.61649 -22.35348 -21.07371 -20.57075 -20.11834 -17.74245 -17.20233 -16.34342 -15.84285 -15.57430 -14.63970 -14.46897 -14.12586 -13.99596 -13.69741 -13.47665 -13.27236 -13.01883 -12.57687 -12.40383 -12.24364 -11.89295 -11.77537 -11.70987 -11.52024 -11.40116 -11.25572 -11.04213 -10.92850 -10.79568 -10.52678 -10.33419 -10.27814 -10.04945 -9.19618 -9.13676 -8.40584 -8.12723 -6.34427 -6.29071 -3.86523 2.24438 2.62453 3.20465 3.21682 3.24125 3.56671 3.88229 4.08640 4.34661 4.68148 4.71038 4.72386 4.86130 5.02154 5.10758 5.22551 5.30027 5.40402 5.41361 5.49689 5.57496 5.63126 5.68857 5.75077 5.76312 5.80129 5.86370 5.88670 5.93265 6.08050 6.21246 6.26190 6.26921 6.35527 6.60108 6.90848 6.96632 7.18715 7.35534 7.49752 7.69252 8.05000 8.15171 8.31512 9.16559 9.91811 10.89484 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024813 B = 0.003228 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.180021 B = 8670.799247 C = 9288.115733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.154 3.846 3 H 0.074 0.926 4 C -0.120 4.120 5 C -0.088 4.088 6 C -0.151 4.151 7 C -0.183 4.183 8 C -0.184 4.184 9 N -0.753 5.753 10 C 0.128 3.872 11 C -0.147 4.147 12 C -0.151 4.151 13 C 0.112 3.888 14 O -0.189 6.189 15 C -0.386 4.386 16 H 0.087 0.913 17 C 0.036 3.964 18 N -0.870 5.870 19 Si 0.937 3.063 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.272 1.272 23 C -0.190 4.190 24 C -0.144 4.144 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.389 0.611 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.267 0.733 41 H 0.126 0.874 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.122 -9.462 19.740 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.048 3.952 3 H 0.092 0.908 4 C -0.158 4.158 5 C -0.126 4.126 6 C -0.170 4.170 7 C -0.220 4.220 8 C -0.221 4.221 9 N -0.388 5.388 10 C 0.030 3.970 11 C -0.169 4.169 12 C -0.170 4.170 13 C 0.060 3.940 14 O -0.094 6.094 15 C -0.463 4.463 16 H 0.104 0.896 17 C -0.167 4.167 18 N -0.507 5.507 19 Si 0.762 3.238 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.197 1.197 23 C -0.210 4.210 24 C -0.167 4.167 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.222 0.778 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.077 0.923 41 H 0.144 0.856 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.228 -8.897 19.591 21.518 hybrid contribution 0.502 -0.953 -0.683 1.275 sum 0.274 -9.850 18.908 21.322 Atomic orbital electron populations 1.22314 0.96740 1.01900 1.01855 1.20718 0.92940 0.96845 0.84677 0.90821 1.21828 0.95486 1.01029 0.97498 1.21176 0.95345 1.00308 0.95740 1.22392 0.92949 1.01379 1.00240 1.23030 1.04800 0.91714 1.02408 1.22961 0.96273 1.01089 1.01787 1.44314 1.76401 1.11355 1.06731 1.17393 1.01857 0.91725 0.86035 1.20206 1.06697 0.92775 0.97246 1.20034 1.06560 0.99604 0.90844 1.19233 0.96359 0.90779 0.87654 1.83983 1.70826 1.39008 1.15623 1.21178 1.39931 0.94945 0.90283 0.89558 1.25202 0.97531 0.95847 0.98102 1.70037 1.45398 1.08664 1.26590 0.85847 0.79415 0.78699 0.79809 1.19706 1.20440 1.19696 1.20980 1.07205 0.94710 0.98066 1.20225 1.05757 0.98588 0.92083 0.92613 0.91980 0.92816 0.91694 0.91057 0.91590 0.91219 0.88078 0.89178 0.88761 0.88759 0.89089 0.77803 0.87087 0.86628 0.92284 0.85620 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 9.42 37.16 0.35 -1.43 16 2 C 0.15 1.68 2.27 -67.93 -0.15 1.53 16 3 H 0.07 0.87 6.49 -51.93 -0.34 0.54 16 4 C -0.12 -1.04 4.71 -26.73 -0.13 -1.16 16 5 C -0.09 -0.81 5.38 -26.73 -0.14 -0.96 16 6 C -0.15 -1.25 5.73 -90.62 -0.52 -1.77 16 7 C -0.18 -1.48 10.18 -26.73 -0.27 -1.75 16 8 C -0.18 -1.50 10.25 -26.73 -0.27 -1.78 16 9 N -0.75 -9.82 4.71 -52.12 -0.25 -10.06 16 10 C 0.13 2.19 6.64 -83.70 -0.56 1.64 16 11 C -0.15 -2.67 8.83 -39.40 -0.35 -3.02 16 12 C -0.15 -3.26 9.98 -39.42 -0.39 -3.65 16 13 C 0.11 2.78 6.65 -39.09 -0.26 2.52 16 14 O -0.19 -5.56 9.76 -0.03 0.00 -5.56 16 15 C -0.39 -11.12 9.48 30.87 0.29 -10.83 16 16 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 17 C 0.04 1.02 5.49 -17.52 -0.10 0.92 16 18 N -0.87 -26.29 13.67 55.48 0.76 -25.53 16 19 Si 0.94 21.13 29.55 -169.99 -5.02 16.11 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 C -0.19 -4.21 9.16 -39.42 -0.36 -4.57 16 24 C -0.14 -2.69 9.89 -39.40 -0.39 -3.07 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.77 7.67 -51.93 -0.40 0.37 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.73 7.49 -51.93 -0.39 0.34 16 32 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.79 8.03 -51.93 -0.42 0.37 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.39 4.55 8.61 -40.82 -0.35 4.20 16 38 H 0.11 1.74 6.08 -52.49 -0.32 1.42 16 39 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.13 2.80 5.63 -52.49 -0.30 2.51 16 42 H 0.10 1.67 8.06 -52.48 -0.42 1.24 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -31.00 345.92 -9.11 -40.11 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.56 Total: 7.13 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -3.25 Total: -27.40 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.51 Total: -35.60 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: 0.00 Total: -5.56 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.00 -9.11 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338114058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.974 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds