Wall clock time and date at job start Mon Mar 30 2020 20:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46802 * 2 1 4 4 N 1.46505 * 109.46977 * 180.02562 * 3 2 1 5 5 C 1.46495 * 119.99951 * 270.00223 * 4 3 2 6 6 C 1.53005 * 109.46694 * 271.59114 * 5 4 3 7 7 C 1.34771 * 119.99827 * 90.00147 * 4 3 2 8 8 O 1.21282 * 120.00137 * 5.06071 * 7 4 3 9 9 C 1.50699 * 119.99733 * 185.06930 * 7 4 3 10 10 H 1.08993 * 109.47123 * 331.87458 * 9 7 4 11 11 C 1.50698 * 109.47336 * 91.88192 * 9 7 4 12 12 H 1.08001 * 120.00400 * 35.35970 * 11 9 7 13 13 C 1.37880 * 120.00136 * 215.35935 * 11 9 7 14 14 N 1.31515 * 120.00133 * 175.87058 * 13 11 9 15 15 Si 1.86800 * 119.99626 * 355.87018 * 13 11 9 16 16 H 1.48500 * 109.47057 * 94.23705 * 15 13 11 17 17 H 1.48506 * 109.47052 * 214.23776 * 15 13 11 18 18 H 1.48503 * 109.47342 * 334.23773 * 15 13 11 19 19 C 1.50706 * 109.46999 * 211.88026 * 9 7 4 20 20 C 1.38230 * 119.99892 * 111.28163 * 19 9 7 21 21 C 1.38241 * 120.00035 * 180.02562 * 20 19 9 22 22 C 1.38236 * 119.99720 * 359.95703 * 21 20 19 23 23 C 1.38236 * 120.00157 * 359.97438 * 22 21 20 24 24 C 1.38232 * 120.00042 * 0.07210 * 23 22 21 25 25 H 1.08991 * 109.47522 * 60.00305 * 1 2 3 26 26 H 1.08998 * 109.46743 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46753 * 299.99213 * 1 2 3 28 28 H 1.08997 * 109.47104 * 239.99982 * 2 1 3 29 29 H 1.08996 * 109.47119 * 119.99916 * 2 1 3 30 30 H 1.08998 * 109.46791 * 60.00089 * 3 2 1 31 31 H 1.09003 * 109.47228 * 300.00278 * 3 2 1 32 32 H 1.09002 * 109.47389 * 31.58809 * 5 4 3 33 33 H 1.08993 * 109.47478 * 151.59498 * 5 4 3 34 34 H 1.09005 * 109.46957 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.47406 * 299.99743 * 6 5 4 36 36 H 1.08995 * 109.47200 * 60.00391 * 6 5 4 37 37 H 0.97003 * 119.99226 * 179.97438 * 14 13 11 38 38 H 1.07997 * 120.00451 * 359.97438 * 20 19 9 39 39 H 1.07993 * 119.99957 * 179.97438 * 21 20 19 40 40 H 1.07997 * 120.00317 * 179.72123 * 22 21 20 41 41 H 1.07997 * 120.00363 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.00127 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2380 1.4424 1.2678 6 6 4.4585 2.8843 1.7296 7 6 4.1784 1.4428 -1.1681 8 8 3.5751 1.5356 -2.2161 9 6 5.6809 1.3276 -1.1713 10 1 6.0791 1.7421 -0.2452 11 6 6.0733 -0.1233 -1.2819 12 1 5.4795 -0.7993 -1.8792 13 6 7.1903 -0.5877 -0.6204 14 7 7.4871 -1.8686 -0.6503 15 14 8.2821 0.6024 0.3181 16 1 7.8677 0.6353 1.7438 17 1 9.6957 0.1571 0.2237 18 1 8.1511 1.9610 -0.2669 19 6 6.2408 2.0901 -2.3444 20 6 6.9716 3.2443 -2.1333 21 6 7.4847 3.9441 -3.2094 22 6 7.2676 3.4892 -4.4966 23 6 6.5379 2.3342 -4.7076 24 6 6.0240 1.6350 -3.6316 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.6619 0.9039 2.0203 33 1 5.2025 0.9536 1.1300 34 1 5.0035 2.8842 2.6736 35 1 5.0346 3.4228 0.9771 36 1 3.4940 3.3731 1.8674 37 1 8.2733 -2.1952 -0.1852 38 1 7.1412 3.5998 -1.1277 39 1 8.0554 4.8460 -3.0445 40 1 7.6645 4.0383 -5.3376 41 1 6.3679 1.9790 -5.7132 42 1 5.4535 0.7329 -3.7965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351802694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:40 Heat of formation + Delta-G solvation = -41.327567 kcal Electronic energy + Delta-G solvation = -22186.259958 eV Core-core repulsion = 19129.994091 eV Total energy + Delta-G solvation = -3056.265866 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.23054 -39.60227 -37.17788 -35.68269 -34.52938 -33.25364 -31.63118 -31.13640 -29.64433 -27.28441 -25.31388 -24.13782 -23.37155 -22.96423 -21.88068 -19.77353 -19.11136 -18.11480 -17.61716 -17.12660 -16.41699 -15.92412 -15.80971 -15.63828 -15.26168 -14.83808 -14.74485 -14.44758 -14.21635 -14.14381 -13.63859 -13.50136 -13.35144 -13.11616 -12.92938 -12.86357 -12.73106 -12.44018 -12.21537 -12.10428 -11.99989 -11.84149 -11.66229 -11.61488 -11.42434 -10.80743 -10.50482 -9.63300 -9.54057 -9.36625 -8.35987 -6.44493 0.62747 0.69921 1.31075 1.38903 1.49464 1.85165 2.24728 2.30985 2.97713 3.13480 3.85511 4.06557 4.07791 4.12419 4.18511 4.23800 4.35949 4.39415 4.39987 4.43043 4.51457 4.59529 4.63531 4.72820 4.82829 4.90492 4.90786 4.94048 5.03090 5.14725 5.20866 5.23184 5.31651 5.34083 5.37004 5.42928 5.69189 5.74543 5.81302 5.96001 6.18934 6.29684 6.51312 6.61687 7.19390 7.40760 8.79640 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.007949 C = 0.006507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.959921 B = 3521.475579 C = 4301.773411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.138 4.138 3 C 0.115 3.885 4 N -0.614 5.614 5 C 0.093 3.907 6 C -0.165 4.165 7 C 0.530 3.470 8 O -0.589 6.589 9 C 0.039 3.961 10 H 0.076 0.924 11 C -0.500 4.500 12 H 0.020 0.980 13 C 0.030 3.970 14 N -0.936 5.936 15 Si 0.917 3.083 16 H -0.245 1.245 17 H -0.290 1.290 18 H -0.223 1.223 19 C -0.070 4.070 20 C -0.143 4.143 21 C -0.126 4.126 22 C -0.133 4.133 23 C -0.138 4.138 24 C -0.100 4.100 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.270 0.730 38 H 0.127 0.873 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.131 0.869 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 12.275 5.484 14.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C -0.007 4.007 4 N -0.346 5.346 5 C -0.029 4.029 6 C -0.223 4.223 7 C 0.321 3.679 8 O -0.470 6.470 9 C 0.018 3.982 10 H 0.094 0.906 11 C -0.538 4.538 12 H 0.038 0.962 13 C -0.169 4.169 14 N -0.574 5.574 15 Si 0.739 3.261 16 H -0.169 1.169 17 H -0.216 1.216 18 H -0.146 1.146 19 C -0.071 4.071 20 C -0.161 4.161 21 C -0.144 4.144 22 C -0.151 4.151 23 C -0.156 4.156 24 C -0.119 4.119 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.127 0.873 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.145 0.855 39 H 0.169 0.831 40 H 0.169 0.831 41 H 0.149 0.851 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.480 12.181 5.023 14.270 hybrid contribution 0.566 -0.865 -0.013 1.033 sum -4.914 11.316 5.011 13.316 Atomic orbital electron populations 1.21631 0.92890 1.02379 1.02666 1.21853 0.97860 0.97087 1.00844 1.21569 0.78846 0.96917 1.03335 1.48033 1.06951 1.73459 1.06151 1.21798 0.97530 0.98866 0.84740 1.22199 1.03008 0.95104 1.01963 1.21151 0.90973 0.72778 0.83036 1.90522 1.71374 1.52104 1.32966 1.18296 0.89183 0.95747 0.94983 0.90616 1.20381 1.11530 0.91167 1.30709 0.96180 1.25841 0.98058 0.96598 0.96441 1.70029 1.27738 1.15510 1.44134 0.86177 0.77835 0.81719 0.80400 1.16932 1.21643 1.14599 1.20240 0.97394 0.94226 0.95282 1.21298 0.99691 0.95000 1.00083 1.21383 1.00242 1.00518 0.92248 1.21359 0.99386 0.96377 0.97931 1.21351 0.99114 0.96647 0.98520 1.20875 0.98770 0.98810 0.93436 0.92918 0.92183 0.90290 0.95836 0.91601 0.87322 0.91958 0.88396 0.91740 0.89319 0.93642 0.90814 0.92074 0.85483 0.83075 0.83131 0.85138 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.91 71.98 0.71 -2.37 16 2 C -0.14 -4.18 6.26 30.60 0.19 -3.99 16 3 C 0.12 3.51 5.45 86.38 0.47 3.98 16 4 N -0.61 -22.66 2.47 -821.81 -2.03 -24.69 16 5 C 0.09 2.84 5.75 86.38 0.50 3.34 16 6 C -0.16 -3.86 10.14 71.98 0.73 -3.13 16 7 C 0.53 24.63 6.67 87.66 0.59 25.21 16 8 O -0.59 -30.76 14.87 -3.04 -0.05 -30.81 16 9 C 0.04 1.87 1.07 -13.03 -0.01 1.86 16 10 H 0.08 3.26 3.12 -2.39 -0.01 3.25 16 11 C -0.50 -28.45 7.94 25.60 0.20 -28.24 16 12 H 0.02 1.33 8.06 -2.91 -0.02 1.31 16 13 C 0.03 1.68 5.47 84.66 0.46 2.14 16 14 N -0.94 -56.84 13.96 21.45 0.30 -56.54 16 15 Si 0.92 40.11 26.54 68.60 1.82 41.93 16 16 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 17 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.22 -8.83 4.76 99.48 0.47 -8.36 16 19 C -0.07 -3.23 4.39 -19.86 -0.09 -3.32 16 20 C -0.14 -5.44 8.55 22.27 0.19 -5.25 16 21 C -0.13 -4.01 10.05 22.27 0.22 -3.79 16 22 C -0.13 -4.20 10.05 22.27 0.22 -3.98 16 23 C -0.14 -5.26 10.05 22.27 0.22 -5.03 16 24 C -0.10 -4.74 8.09 22.27 0.18 -4.56 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 30 H 0.11 2.39 8.07 -2.39 -0.02 2.37 16 31 H 0.06 2.11 7.36 -2.39 -0.02 2.09 16 32 H 0.10 2.45 8.08 -2.39 -0.02 2.43 16 33 H 0.06 2.36 5.63 -2.39 -0.01 2.35 16 34 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.04 1.19 7.91 -2.39 -0.02 1.17 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 38 H 0.13 4.28 7.30 -2.91 -0.02 4.26 16 39 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 40 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 41 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 42 H 0.08 4.44 7.59 -2.91 -0.02 4.42 16 Total: -1.00 -73.41 339.26 5.59 -67.82 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 0.75 Total: 29.41 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 4.80 Total: -27.12 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -1.73 Total: -81.23 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.05 Total: -30.81 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 1.82 Total: 41.93 kcal Total: -73.41 5.59 -67.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351802694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.496 kcal (2) G-P(sol) polarization free energy of solvation -73.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds