Wall clock time and date at job start Mon Mar 30 2020 20:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47107 * 2 1 4 4 N 1.46504 * 109.47172 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.99783 * 270.00200 * 4 3 2 6 6 C 1.53003 * 109.47064 * 268.04020 * 5 4 3 7 7 C 1.34772 * 120.00285 * 89.99879 * 4 3 2 8 8 O 1.21287 * 119.99895 * 4.70762 * 7 4 3 9 9 C 1.50702 * 120.00239 * 184.70799 * 7 4 3 10 10 H 1.09003 * 109.46756 * 31.31186 * 9 7 4 11 11 C 1.50700 * 109.47034 * 271.31301 * 9 7 4 12 12 H 1.07996 * 120.00023 * 116.83577 * 11 9 7 13 13 C 1.37876 * 120.00004 * 296.55999 * 11 9 7 14 14 N 1.31514 * 119.99811 * 5.00041 * 13 11 9 15 15 Si 1.86797 * 120.00201 * 185.00039 * 13 11 9 16 16 H 1.48502 * 109.47002 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47325 * 119.99558 * 15 13 11 18 18 H 1.48499 * 109.47190 * 240.00137 * 15 13 11 19 19 C 1.50699 * 109.47257 * 151.31032 * 9 7 4 20 20 C 1.38234 * 120.00112 * 321.54977 * 19 9 7 21 21 C 1.38234 * 119.99810 * 179.81374 * 20 19 9 22 22 C 1.38240 * 120.00062 * 0.38520 * 21 20 19 23 23 C 1.38233 * 119.99918 * 359.86723 * 22 21 20 24 24 C 1.38233 * 119.99639 * 141.81728 * 19 9 7 25 25 H 1.09004 * 109.47337 * 299.99843 * 1 2 3 26 26 H 1.09005 * 109.47103 * 59.99922 * 1 2 3 27 27 H 1.08998 * 109.47439 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46607 * 240.00172 * 2 1 3 29 29 H 1.08993 * 109.47266 * 120.00443 * 2 1 3 30 30 H 1.08999 * 109.47004 * 60.00342 * 3 2 1 31 31 H 1.09005 * 109.47202 * 300.00017 * 3 2 1 32 32 H 1.09001 * 109.47266 * 28.04182 * 5 4 3 33 33 H 1.09002 * 109.47327 * 148.04067 * 5 4 3 34 34 H 1.08998 * 109.47040 * 184.34437 * 6 5 4 35 35 H 1.08995 * 109.46989 * 304.33843 * 6 5 4 36 36 H 1.08992 * 109.46964 * 64.34091 * 6 5 4 37 37 H 0.97006 * 120.00013 * 179.97438 * 14 13 11 38 38 H 1.08002 * 120.00035 * 359.97438 * 20 19 9 39 39 H 1.08007 * 119.99982 * 180.23268 * 21 20 19 40 40 H 1.08004 * 119.99634 * 179.83535 * 22 21 20 41 41 H 1.07999 * 119.99808 * 179.97438 * 23 22 21 42 42 H 1.07995 * 120.00492 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4423 1.2678 6 6 4.5358 2.8839 1.6850 7 6 4.1784 1.4427 -1.1680 8 8 3.5746 1.5290 -2.2164 9 6 5.6816 1.3356 -1.1709 10 1 6.0051 0.7413 -0.3162 11 6 6.2836 2.7142 -1.0808 12 1 6.8841 2.9864 -0.2255 13 6 6.0724 3.6261 -2.0932 14 7 5.2664 3.3283 -3.0888 15 14 6.9309 5.2845 -2.0505 16 1 7.7772 5.3726 -0.8334 17 1 7.7827 5.4322 -3.2579 18 1 5.9150 6.3674 -2.0259 19 6 6.1355 0.6714 -2.4452 20 6 5.4049 -0.3742 -2.9779 21 6 5.8192 -0.9808 -4.1489 22 6 6.9685 -0.5471 -4.7829 23 6 7.7020 0.4950 -4.2473 24 6 7.2856 1.1042 -3.0784 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.6344 0.9590 2.0362 33 1 5.1747 0.8984 1.1461 34 1 5.1472 2.8821 2.5874 35 1 5.0731 3.3905 0.8833 36 1 3.5995 3.4061 1.8815 37 1 5.1175 3.9700 -3.8009 38 1 4.5089 -0.7154 -2.4806 39 1 5.2463 -1.7953 -4.5671 40 1 7.2936 -1.0229 -5.6963 41 1 8.6001 0.8336 -4.7424 42 1 7.8586 1.9185 -2.6601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351802707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:43 Heat of formation + Delta-G solvation = -13.357505 kcal Electronic energy + Delta-G solvation = -22507.288454 eV Core-core repulsion = 19452.235460 eV Total energy + Delta-G solvation = -3055.052993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.18427 -37.68357 -35.18282 -33.77126 -32.97237 -30.75888 -29.69164 -29.45699 -27.51914 -25.63042 -23.60388 -22.60285 -21.51311 -21.19007 -20.16364 -17.99846 -16.73792 -16.00641 -15.57675 -15.13462 -14.78661 -14.28532 -14.11182 -13.78335 -13.55391 -13.07184 -12.76639 -12.65099 -12.30644 -12.21069 -12.00584 -11.93340 -11.57443 -11.44508 -11.26395 -11.00435 -10.94284 -10.87104 -10.70251 -10.48004 -10.33132 -10.26276 -10.01329 -9.54794 -9.30854 -8.62611 -8.11832 -7.73413 -7.60891 -7.33844 -5.97578 -4.17167 2.55436 2.60719 3.23997 3.34349 3.34811 4.02710 4.22973 4.42067 4.99447 5.22377 5.28132 5.34694 5.51448 5.62913 5.72399 5.85620 5.88733 5.94987 6.01149 6.03674 6.05419 6.15018 6.16739 6.24792 6.37170 6.44182 6.47897 6.61753 6.65032 6.68557 6.81595 6.89064 7.08818 7.16772 7.20590 7.53797 7.60657 7.65172 7.76536 7.84727 8.16938 8.28692 8.55599 8.85329 9.46285 9.79189 10.97319 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.008704 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.099852 B = 3216.262578 C = 4530.365078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.120 3.880 4 N -0.632 5.632 5 C 0.121 3.879 6 C -0.179 4.179 7 C 0.529 3.471 8 O -0.510 6.510 9 C 0.062 3.938 10 H 0.051 0.949 11 C -0.538 4.538 12 H 0.067 0.933 13 C 0.074 3.926 14 N -0.816 5.816 15 Si 0.877 3.123 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.285 1.285 19 C -0.001 4.001 20 C -0.111 4.111 21 C -0.137 4.137 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.072 4.072 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.040 0.960 37 H 0.261 0.739 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.210 -5.517 6.292 8.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C -0.004 4.004 4 N -0.369 5.369 5 C -0.003 4.003 6 C -0.237 4.237 7 C 0.319 3.681 8 O -0.383 6.383 9 C 0.041 3.959 10 H 0.069 0.931 11 C -0.575 4.575 12 H 0.085 0.915 13 C -0.136 4.136 14 N -0.447 5.447 15 Si 0.705 3.295 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.211 1.211 19 C -0.002 4.002 20 C -0.130 4.130 21 C -0.155 4.155 22 C -0.166 4.166 23 C -0.160 4.160 24 C -0.090 4.090 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.632 -5.396 5.476 8.126 hybrid contribution 0.204 1.224 -0.089 1.244 sum -2.428 -4.172 5.387 7.233 Atomic orbital electron populations 1.21685 0.96012 1.01173 1.01583 1.21890 0.95275 0.98493 1.01942 1.21189 0.81882 0.95438 1.01851 1.48156 1.04770 1.77327 1.06599 1.21277 0.96611 0.97021 0.85363 1.22357 1.01128 0.97925 1.02326 1.21450 0.90814 0.73935 0.81869 1.90601 1.69928 1.46889 1.30859 1.17943 0.88881 0.97071 0.92017 0.93081 1.20567 1.34231 0.95863 1.06841 0.91497 1.25095 0.94710 0.98048 0.95738 1.70245 1.30896 1.34228 1.09376 0.86759 0.79790 0.84709 0.78278 1.19498 1.20756 1.21135 1.19823 0.92708 0.91282 0.96362 1.20865 0.98598 0.97071 0.96437 1.20789 0.97243 1.00712 0.96792 1.20741 0.96910 0.99167 0.99815 1.20977 0.99888 0.97636 0.97496 1.21045 0.96660 0.97497 0.93798 0.93074 0.92666 0.93081 0.91807 0.92545 0.92381 0.90596 0.92690 0.90569 0.93171 0.88990 0.94077 0.92900 0.88168 0.88152 0.88200 0.88033 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.15 0.37 -1.42 16 2 C -0.14 -2.03 6.26 -26.73 -0.17 -2.20 16 3 C 0.12 2.07 5.44 -4.04 -0.02 2.04 16 4 N -0.63 -12.30 2.47 -173.68 -0.43 -12.73 16 5 C 0.12 1.97 5.97 -4.04 -0.02 1.94 16 6 C -0.18 -2.93 10.22 37.16 0.38 -2.55 16 7 C 0.53 12.46 5.42 -10.99 -0.06 12.40 16 8 O -0.51 -13.88 13.01 5.55 0.07 -13.80 16 9 C 0.06 1.45 2.15 -94.07 -0.20 1.25 16 10 H 0.05 1.10 6.02 -51.93 -0.31 0.78 16 11 C -0.54 -13.17 5.46 -34.44 -0.19 -13.36 16 12 H 0.07 1.60 7.52 -52.49 -0.39 1.20 16 13 C 0.07 1.91 4.02 -17.82 -0.07 1.84 16 14 N -0.82 -22.85 9.94 55.43 0.55 -22.30 16 15 Si 0.88 20.19 29.54 -169.99 -5.02 15.17 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 19 C 0.00 -0.02 4.20 -104.63 -0.44 -0.46 16 20 C -0.11 -2.53 8.43 -39.58 -0.33 -2.86 16 21 C -0.14 -2.82 10.05 -39.58 -0.40 -3.22 16 22 C -0.15 -2.93 10.05 -39.58 -0.40 -3.33 16 23 C -0.14 -2.95 10.05 -39.58 -0.40 -3.35 16 24 C -0.07 -1.67 8.16 -39.58 -0.32 -1.99 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.08 1.51 7.36 -51.93 -0.38 1.12 16 32 H 0.05 0.74 8.06 -51.93 -0.42 0.32 16 33 H 0.08 1.24 5.82 -51.93 -0.30 0.94 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.83 5.71 -51.93 -0.30 1.54 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.10 2.26 7.09 -52.49 -0.37 1.88 16 39 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 40 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 41 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.12 2.95 6.37 -52.49 -0.33 2.61 16 LS Contribution 333.54 15.07 5.03 5.03 Total: -1.00 -29.51 333.54 -8.67 -38.18 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.60 Total: 5.73 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -2.28 Total: -15.27 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.12 Total: -35.03 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.07 Total: -13.80 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.51 -8.67 -38.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351802707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.825 kcal (2) G-P(sol) polarization free energy of solvation -29.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds